Desmopsisterriflora, an extraordinary new species of Annonaceae with flagelliflory.

Flagelliflory refers to the production of inflorescences exclusively on long, whip-like branches which emerge from the main trunk and extend along the ground or below it. It is the rarest type of cauliflory and only a few cases have been reported in the world. Here, a new species of Annonaceae with flagelliflory is described and illustrated. The phylogenetic relationships of the new species were inferred using a hybrid-capture phylogenomic approach and we present some notes on its reproductive ecology and pollen characteristics. The new species, namely Desmopsisterriflorasp. nov., is part of a clade composed of Mexican species of Stenanona with long, awned petals. Desmopsisterriflora is distinguished by its flageliflorous inflorescences, basely fused sepals, thick red petals, reduced number of ovules per carpel, pollen grains with a weakly rugulate to fossulate exine ornamentation, and its globose, apiculate fruits with a woody testa. The morphological characteristics of the flagella suggest that these are specialized branches rather than inflorescences, and the absence of ramiflory implies an exclusively reproductive function. The flowers are infrequently visited by insects, their potential pollinators being flies and ants.

Interspecific Hybridization and Island Colonization History, not Rarity, Most Strongly Affect the Genetic Diversity in Diospyros a Clade of Mascarene-Endemic Trees.

Many factors shape the genetic diversity of island-endemic trees, with important implications for conservation. Oceanic island-endemic lineages undergo an initial founding bottleneck during the colonization process and subsequently accumulate diversity following colonization. Moreover, many island endemics occur in small populations and are further threatened by anthropogenic factors that cause population declines, making them susceptible to losses in genetic diversity through genetic drift, inbreeding, and bottlenecks. However, life-history traits commonly found in trees, such as outcrossing mechanisms, long lifespans, and a propensity for interspecific hybridization, may help buffer against losses of genetic variation. To assess the relative importance of colonization history, rarity, and distribution in shaping genetic diversity of island-endemic trees, we conducted a comparative population genomic analysis of 13 species of Diospyros (Ebenaceae) endemic to the Mascarene Islands that differ in island colonization history, distribution, population size, and IUCN threat status. We genotyped 328 individuals across the islands using 2b-RADseq, compared genetic diversity both among and within species, and assessed patterns of genetic structure. Genetic diversity did not vary significantly by IUCN status, but we found that species that co-occur with others on the same intermediate-aged island (Mauritius) had much greater genetic diversity than those that occur solitarily on an island (Réunion and Rodrigues), likely because of greater interspecific hybridization among species with overlapping distributions and processes related to time since island colonization. Results presented here were used to determine priority localities for in situ and ex situ conservation efforts to maximize the genetic diversity of each Mascarene Diospyros species.

RAD-sequencing reveals patterns of diversification and hybridization, and the accumulation of reproductive isolation in a clade of partially sympatric, tropical island trees.

A common pattern observed in temperate tree clades is that species are often morphologically distinct and partially interfertile but maintain species cohesion despite ongoing hybridization where ranges overlap. Although closely related species commonly occur in sympatry in tropical ecosystems, little is known about patterns of hybridization within a clade over time, and the implications of this hybridization for the maintenance of species boundaries. In this study, we focused on a clade of sympatric trees in the genus Diospyros in the Mascarene islands and investigated whether species are genetically distinct, whether they hybridize, and how patterns of hybridization are related to the time since divergence among species. We sampled multiple populations from each of 12 Mascarene Diospyros species, generated genome-wide single nucleotide polymorphism data using 2bRADseq, and conducted population genomic and phylogenomic analyses. We found that Mascarene Diospyros species diverged millions of years ago and are today largely genetically distinct from one another. Although hybridization was observed between closely related species belonging to the same subclade, more distantly related species showed little evidence of interspecific hybridization. Phylogenomic analyses also suggested that introgression has occurred during the evolutionary history of the clade. This suggests that, as diversification progressed, interspecific hybridization occurred among species, but became infrequent as lineages diverged from one another and evolved reproductive barriers. Species now coexist in partial sympatry, and experience limited hybridization between close relatives. Additional research is needed to better understand the role that introgression may have played in adaptation and diversification of Mascarene Diospyros, and its relevance for conservation.

Infant nest and stash sites of variegated lemurs (Varecia rubra): The extended phenotype.

Very few primate species give birth to litters and build nests in which to care for them. Those that do are small-bodied, nocturnal, and solitary. Variegated lemurs are exceptional in that they bear litters in arboreal nests, yet are relatively large-bodied, day-active, and gregarious. Furthermore, they raise their young cooperatively and practice absentee parenting; non-clinging young are transported orally and periodically stashed in arboreal spots that are supportive, sheltered, and usually concealed. Following birth, infant nest and stash trees were mapped, measured, and taxonomically identified in a population of red variegated lemurs in Masoala National Park. About 40 trees were used per litter for nesting and stashing young in adjacent, non-overlapping core areas within the community. These were the largest trees in the forest, even larger than those used for feeding. Furthermore, most occur in valleys and are laced with lianas, creating sites that buffer young from predation, accidental falls, and to some degree, thermal stress. In combination, the number of nest and stash trees used per litter, their characteristics, and their geo-spatial arrangement indicate that such sites are both select and limited in the landscape, exposing the dependence of red variegated lemurs on intact forest canopies for raising non-clinging young within the context of an absentee parenting system. Nest and stash sites are in effect Varecia's extended phenotype. Logging of large trees in Madagascar's eastern rain forests is considered a major factor resulting in local extinctions of variegated lemurs because they rely heavily upon large, mature trees for fruit. However, this study suggests that removal of large trees may more directly precipitate local extinctions by impeding their ability to reproduce. Long-term survival of red variegated lemurs will depend upon efforts to end harmful timber extraction in its remaining stronghold, the Masoala Peninsula.

ConR: An R package to assist large-scale multispecies preliminary conservation assessments using distribution data.

The Red List Categories and the accompanying five criteria developed by the International Union for Conservation of Nature (IUCN) provide an authoritative and comprehensive methodology to assess the conservation status of organisms. Red List criterion B, which principally uses distribution data, is the most widely used to assess conservation status, particularly of plant species. No software package has previously been available to perform large-scale multispecies calculations of the three main criterion B parameters [extent of occurrence (EOO), area of occupancy (AOO) and an estimate of the number of locations] and provide preliminary conservation assessments using an automated batch process. We developed ConR, a dedicated R package, as a rapid and efficient tool to conduct large numbers of preliminary assessments, thereby facilitating complete Red List assessment. ConR (1) calculates key geographic range parameters (AOO and EOO) and estimates the number of locations sensu IUCN needed for an assessment under criterion B; (2) uses this information in a batch process to generate preliminary assessments of multiple species; (3) summarize the parameters and preliminary assessments in a spreadsheet; and (4) provides a visualization of the results by generating maps suitable for the submission of full assessments to the IUCN Red List. ConR can be used for any living organism for which reliable georeferenced distribution data are available. As distributional data for taxa become increasingly available via large open access datasets, ConR provides a novel, timely tool to guide and accelerate the work of the conservation and taxonomic communities by enabling practitioners to conduct preliminary assessments simultaneously for hundreds or even thousands of species in an efficient and time-saving way.

Plants on the IUCN Red List: setting priorities to inform conservation.

The continuing decline of plant diversity will have a greater impact on human society than any other type of biodiversity loss. It is imperative, therefore, that efforts are increased to assess the conservation status of plants for the IUCN Red List of Threatened Species, the de facto baseline reference for many conservation decisions. As discussed here, a review of plants on the current Red List suggests that priorities for future Red Listing should serve multiple purposes: to inform national conservation policy, to contribute to global conservation analyses, to encompass the phylogenetic diversity of plants and to address the dependence of human societies on plants. Future progress in plant Red Listing requires greater participation by the world's herbaria and increased support for expert networks.

Deforestation and plant diversity of Madagascar's littoral forests.

Few studies have attempted to quantify the reduction or document the floristic composition of forests in Madagascar. Thus, we focused specifically on deforestation and plant diversity in Madagascar's eastern littoral community. We used a data set of approximately 13,500 specimen records compiled from both historical and contemporary collections resulting from recent intensive inventory efforts to enumerate total plant species richness and to analyze the degree of endemism within littoral forests. Change in littoral forest cover from original to current extent was estimated using geographical information systems tools, remote sensing data (satellite imagery and low-elevation digital photography), and environmental data layers. Of the original littoral forest only 10.3% remains in the form of small forest parcels, and only 1.5% of these remaining fragments are included within the existing protected-areas network. Additionally, approximately 13% of Madagascar's total native flora has been recorded from these forests that originally occupied <1% of its total land surface, and over 25% of the 1535 plant species known from littoral forests are endemic to this community. Given the ongoing pressure from human settlement along Madagascar's eastern coast, protection of the remaining forest fragments is critical for their survival. Fifteen of the largest intact littoral forest fragments we identified, collectively representing 41.5% of remaining littoral forest, are among priority sites recommended to the government of Madagascar for plant conservation and incorporation into the protected-areas network.

Pinpointing and preventing imminent extinctions.

Slowing rates of global biodiversity loss requires preventing species extinctions. Here we pinpoint centers of imminent extinction, where highly threatened species are confined to single sites. Within five globally assessed taxa (i.e., mammals, birds, selected reptiles, amphibians, and conifers), we find 794 such species, three times the number recorded as having gone extinct since 1500. These species occur in 595 sites, concentrated in tropical forests, on islands, and in mountainous areas. Their taxonomic and geographical distribution differs significantly from that of historical extinctions, indicating an expansion of the current extinction episode beyond sensitive species and places toward the planet's most biodiverse mainland regions. Only one-third of the sites are legally protected, and most are surrounded by intense human development. These sites represent clear opportunities for urgent conservation action to prevent species loss.