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1.
Methods Mol Biol ; 2478: 677-700, 2022.
Article in English | MEDLINE | ID: mdl-36063338

ABSTRACT

The eukaryotic cytoskeleton consists of three different types of biopolymers - microtubules, actin filaments, and intermediate filaments - and provides cells with versatile mechanical properties, combining stability and flexibility. The unique molecular structure of intermediate filaments leads to high extensibility and stability under load. With high laser power dual optical tweezers, the mechanical properties of intermediate filaments may be investigated, while monitoring the extension with fluorescence microscopy. Here, we provide detailed protocols for the preparation of single vimentin intermediate filaments and general measurement protocols for (i) stretching experiments, (ii) repeated loading and relaxation cycles, and (iii) force-clamp experiments. We describe methods for the analysis of the experimental data in combination with computational modeling approaches.


Subject(s)
Cytoskeleton , Intermediate Filaments , Actin Cytoskeleton , Intermediate Filaments/chemistry , Microtubules , Vimentin/chemistry
2.
Methods Mol Biol ; 2478: 701-723, 2022.
Article in English | MEDLINE | ID: mdl-36063339

ABSTRACT

The cytoskeleton consists of three types of biopolymers-actin filaments, microtubules, and intermediate filaments-and the interplay between these components is essential for many cellular functions such as cell migration, mitosis, and the mechanical response to external cues. In the cell, the interactions between the filaments are mediated by a myriad of cross-linkers and motor proteins; however, direct forces, mediated by electrostatics or hydrophobicity, may also play an important role. Here, we provide experimental protocols and approaches for analysis and modeling for studying the interactions between either two individual vimentin intermediate filaments or between a vimentin intermediate filament and a microtubule.


Subject(s)
Actins , Cytoskeleton , Actins/metabolism , Cytoskeleton/metabolism , Intermediate Filaments/chemistry , Intermediate Filaments/metabolism , Microtubules/metabolism , Vimentin/metabolism
3.
Nat Commun ; 12(1): 3799, 2021 06 18.
Article in English | MEDLINE | ID: mdl-34145230

ABSTRACT

The cytoskeleton determines cell mechanics and lies at the heart of important cellular functions. Growing evidence suggests that the manifold tasks of the cytoskeleton rely on the interactions between its filamentous components-actin filaments, intermediate filaments, and microtubules. However, the nature of these interactions and their impact on cytoskeletal dynamics are largely unknown. Here, we show in a reconstituted in vitro system that vimentin intermediate filaments stabilize microtubules against depolymerization and support microtubule rescue. To understand these stabilizing effects, we directly measure the interaction forces between individual microtubules and vimentin filaments. Combined with numerical simulations, our observations provide detailed insight into the physical nature of the interactions and how they affect microtubule dynamics. Thus, we describe an additional, direct mechanism by which cells establish the fundamental cross talk of cytoskeletal components alongside linker proteins. Moreover, we suggest a strategy to estimate the binding energy of tubulin dimers within the microtubule lattice.


Subject(s)
Actin Cytoskeleton/metabolism , Intermediate Filaments/metabolism , Microtubules/metabolism , Vimentin/metabolism , Animals , Biophysical Phenomena/physiology , Cytoskeleton/metabolism , Static Electricity
4.
Proc Natl Acad Sci U S A ; 118(27)2021 07 06.
Article in English | MEDLINE | ID: mdl-34187892

ABSTRACT

The cytoskeleton, an intricate network of protein filaments, motor proteins, and cross-linkers, largely determines the mechanical properties of cells. Among the three filamentous components, F-actin, microtubules, and intermediate filaments (IFs), the IF network is by far the most extensible and resilient to stress. We present a multiscale approach to disentangle the three main contributions to vimentin IF network mechanics-single-filament mechanics, filament length, and interactions between filaments-including their temporal evolution. Combining particle tracking, quadruple optical trapping, and computational modeling, we derive quantitative information on the strength and kinetics of filament interactions. Specifically, we find that hydrophobic contributions to network mechanics enter mostly via filament-elongation kinetics, whereas electrostatics have a direct influence on filament-filament interactions.


Subject(s)
Intermediate Filaments/metabolism , Vimentin/metabolism , Detergents/pharmacology , Humans , Hydrophobic and Hydrophilic Interactions , Ions , Models, Biological , Static Electricity , Time Factors
5.
Nanoscale ; 12(28): 15236-15245, 2020 Jul 23.
Article in English | MEDLINE | ID: mdl-32642745

ABSTRACT

The cytoskeleton is formed by three types of filamentous proteins - microtubules, actin filaments, and intermediate filaments (IFs) - and enables cells to withstand external and internal forces. Vimentin is the most abundant IF protein in humans and assembles into 10 nm diameter filaments with remarkable mechanical properties, such as high extensibility and stability. It is, however, unclear to which extent these properties are influenced by the electrostatic environment. Here, we study the mechanical properties of single vimentin filaments by employing optical trapping combined with microfluidics. Force-strain curves, recorded at varying ion concentrations and pH values, reveal that the mechanical properties of single vimentin IFs are influenced by pH and ion concentration. By combination with Monte Carlo simulations, we relate these altered mechanics to electrostatic interactions of subunits within the filaments. We thus suggest possible mechanisms that allow cells to locally tune their stiffness without remodeling the entire cytoskeleton.


Subject(s)
Cytoskeleton , Intermediate Filaments , Humans , Hydrogen-Ion Concentration , Optical Tweezers , Vimentin
6.
Phys Rev Lett ; 123(18): 188102, 2019 Nov 01.
Article in English | MEDLINE | ID: mdl-31763918

ABSTRACT

The cytoskeleton is a composite network of three types of protein filaments, among which intermediate filaments (IFs) are the most extensible ones. Two very important IFs are keratin and vimentin, which have similar molecular architectures but different mechanical behaviors. Here we compare the mechanical response of single keratin and vimentin filaments using optical tweezers. We show that the mechanics of vimentin strongly depends on the ionic strength of the buffer and that its force-strain curve suggests a high degree of cooperativity between subunits. Indeed, a computational model indicates that in contrast to keratin, vimentin is characterized by strong lateral subunit coupling of its charged monomers during unfolding of α helices. We conclude that cells can tune their mechanics by differential use of keratin versus vimentin.


Subject(s)
Cytoskeleton/chemistry , Keratins/chemistry , Models, Biological , Vimentin/chemistry , Biomechanical Phenomena , Buffers , Cytoskeleton/metabolism , Keratins/metabolism , Microscopy, Atomic Force , Optical Tweezers , Osmolar Concentration , Protein Conformation, alpha-Helical , Vimentin/metabolism
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