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1.
Air Qual Atmos Health ; 15(11): 1993-2007, 2022.
Article in English | MEDLINE | ID: mdl-35891896

ABSTRACT

During spring 2020, unprecedented changes in local and regional emissions have occurred around the globe due to governmental restrictions associated with COVID-19. Many European countries including Austria issued partial curfews or stay-at-home order policies, which have impacted ambient air quality through reductions in non-essential transportation and energy consumption of industrial sites and work places. Here, we analyse the effect of these measures on ambient concentrations of nitrogen oxides (NOx), ozone (O3) and particulate matter (PM10) during the first nationwide lockdown in Austria (16.03.2020 to 14.04.2020). To ensure a robust analysis, the Austrian domain is divided into four individual subsectors contingent on regional climate. For air quality analysis a novel method is applied for filtering days with comparable weather conditions during the 2020 lockdown and spring 2017 to 2019. In general, our analysis shows decreasing pollutant concentrations, although in magnitude dependent on pollutant and regional subdomain. Largest reductions are found for NOx reaching up to -68% at traffic sites reflecting the substantial decrease in non-essential transport. Changes in the O3 concentrations at background sites show a rather weak response to NOx declines varying between roughly -18 to +8% for both the median and the upper tail of the distribution. Occasional site level increases in O3 concentrations can be attributed to comparably weak titration during night-time. PM10 concentrations show the smallest response among air pollutants, attributable to manifold precursor sources not affected by the lockdown measures. However, our analysis indicates also a shift of PM10 distributions at traffic sites closer to distributions observed at background sites. Supplementary Information: The online version contains supplementary material available at 10.1007/s11869-022-01232-w.

2.
Braz J Med Biol Res ; 52(9): e8935, 2019.
Article in English | MEDLINE | ID: mdl-31482979

ABSTRACT

The scientific publication landscape is changing quickly, with an enormous increase in options and models. Articles can be published in a complex variety of journals that differ in their presentation format (online-only or in-print), editorial organizations that maintain them (commercial and/or society-based), editorial handling (academic or professional editors), editorial board composition (academic or professional), payment options to cover editorial costs (open access or pay-to-read), indexation, visibility, branding, and other aspects. Additionally, online submissions of non-revised versions of manuscripts prior to seeking publication in a peer-reviewed journal (a practice known as pre-printing) are a growing trend in biological sciences. In this changing landscape, researchers in biochemistry and molecular biology must re-think their priorities in terms of scientific output dissemination. The evaluation processes and institutional funding for scientific publications should also be revised accordingly. This article presents the results of discussions within the Department of Biochemistry, University of São Paulo, on this subject.


Subject(s)
Biochemistry , Molecular Biology , Periodicals as Topic/statistics & numerical data , Publishing/trends , Research , Brazil , Humans , Periodicals as Topic/standards , Periodicals as Topic/trends
3.
Braz. j. med. biol. res ; 52(9): e8935, 2019. graf
Article in English | LILACS | ID: biblio-1019568

ABSTRACT

The scientific publication landscape is changing quickly, with an enormous increase in options and models. Articles can be published in a complex variety of journals that differ in their presentation format (online-only or in-print), editorial organizations that maintain them (commercial and/or society-based), editorial handling (academic or professional editors), editorial board composition (academic or professional), payment options to cover editorial costs (open access or pay-to-read), indexation, visibility, branding, and other aspects. Additionally, online submissions of non-revised versions of manuscripts prior to seeking publication in a peer-reviewed journal (a practice known as pre-printing) are a growing trend in biological sciences. In this changing landscape, researchers in biochemistry and molecular biology must re-think their priorities in terms of scientific output dissemination. The evaluation processes and institutional funding for scientific publications should also be revised accordingly. This article presents the results of discussions within the Department of Biochemistry, University of São Paulo, on this subject.


Subject(s)
Humans , Periodicals as Topic/statistics & numerical data , Publishing/trends , Research , Biochemistry , Molecular Biology , Periodicals as Topic/standards , Periodicals as Topic/trends , Brazil
5.
Toxicon ; 58(1): 8-17, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21510967

ABSTRACT

Experimental evidence shows that the mechanism of pore formation by actinoporins is a multistep process, involving binding of the water-soluble monomer to the membrane and subsequent oligomerization on the membrane surface, leading to the formation of a functional pore. However, as for other eukaryotic pore-forming toxins, the molecular details of the mechanism of membrane insertion and oligomerization are not clear. In order to obtain further insight with regard to the structure-function relationship in sticholysins, we designed and produced three cysteine mutants of recombinant sticholysin I (rStI) in relevant functional regions for membrane interaction: StI E2C and StI F15C (in the N-terminal region) and StI R52C (in the membrane binding site). The conformational characterization derived from fluorescence and CD spectroscopic studies of StI E2C, StI F15C and StI R52C suggests that replacement of these residues by Cys in rStI did not noticeably change the conformation of the protein. The substitution by Cys of Arg5² in the phosphocholine-binding site, provoked noticeable changes in rStI permeabilizing activity; however, the substitutions in the N-terminal region (Glu², Phe¹5) did not modify the toxin's permeabilizing ability. The presence of a dimerized population stabilized by a disulfide bond in the StI E2C mutant showed higher pore-forming activity than when the protein is in the monomeric state, suggesting that sticholysins pre-ensembled at the N-terminal region could facilitate pore formation.


Subject(s)
Pore Forming Cytotoxic Proteins/chemistry , Animals , Arginine/chemistry , Arginine/genetics , Binding Sites , Cell Membrane/chemistry , Cell Membrane/metabolism , Cloning, Molecular , Cysteine/chemistry , Cysteine/genetics , Mutagenesis, Site-Directed , Mutation , Organic Chemicals/chemistry , Organic Chemicals/toxicity , Pore Forming Cytotoxic Proteins/genetics , Pore Forming Cytotoxic Proteins/toxicity , Protein Structure, Tertiary , Sea Anemones/metabolism , Structure-Activity Relationship
6.
Toxicon ; 48(8): 1083-94, 2006 Dec 15.
Article in English | MEDLINE | ID: mdl-17067649

ABSTRACT

Sticholysins I and II (Sts I and II) are two potent cytolysins from the sea anemone Stichodactyla helianthus. These isoforms present 13 substitutions, with three non-conservative located at the N-terminus. St II is considerably more hemolytic than St I in human red blood cells, a result explained by the smaller number of negatively charged groups present at St II's N-terminus. In the present work, we have obtained a recombinant St I (rSt I), differing from the wild type in a single amino acid residue (E16Q). This pseudo-wild type is structurally similar to St I and shows a similar capacity to interact with and form pores in model membranes. This was assessed by the intrinsic fluorescence increase in the presence of liposomes, their adsorption to bilayers (measured by SPR), their concentration at the air-water interface, their interaction with lipid monolayers and their capacity to promote the release of carboxyfluorescein entrapped in liposomes. In spite of these similarities, rSt I presents a larger hemolytic activity in human red blood cells than St I, being intermediate in activity between Sts I and II. The results obtained in the present work emphasize that even the change of one single E by Q at the N-terminal segment may modify the toxin HA and show that this functional property is the most sensitive to subtle changes in the protein primary structure.


Subject(s)
Pore Forming Cytotoxic Proteins/chemistry , Sea Anemones/chemistry , Amino Acid Sequence , Animals , Base Sequence , Circular Dichroism , Erythrocytes/drug effects , Lipid Bilayers/metabolism , Liposomes/metabolism , Models, Molecular , Molecular Sequence Data , Organic Chemicals/chemistry , Organic Chemicals/isolation & purification , Organic Chemicals/metabolism , Permeability/drug effects , Pore Forming Cytotoxic Proteins/genetics , Pore Forming Cytotoxic Proteins/metabolism , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Analysis, Protein , Surface Plasmon Resonance , Surface Tension/drug effects
7.
Faraday Discuss ; 125: 357-77; discussion 391-407, 2004.
Article in English | MEDLINE | ID: mdl-14750681

ABSTRACT

In the present paper we study the reactivity of model Pt nanoparticles supported on glassy carbon. The particle size effect is rationalized for CO monolayer oxidation exploring electrochemical methods (stripping voltammetry and chronoamperometry) and modelling. Significant size effects are observed in the particle size interval from ca. 1 to 4 nm, including the positive shift of the CO stripping peak with decreasing particle size and a pronounced asymmetry of the current transients at constant potential. The latter go through a maximum at low COads conversion and exhibit tailing, which is the longer the smaller the particle size. Neither mean field nor nucleation & growth models give a coherent explanation of these experimental findings. We, therefore, suggest a basic model employing the active site concept. With a number of reasonable simplifications a full analytical solution is obtained, which allows a straightforward comparison of the theory with the experimental data. A good correspondence between experiment and theory is demonstrated. The model suggests restricted COads mobility at Pt nanoparticles below ca. 2 nm size, with the diffusion coefficient strongly dependent on the particle size, and indicates a transition towards fast diffusion when the particle size exceeds ca. 3 nm. Estimates of relevant kinetic parameters, including diffusion coefficient, reaction constant etc. are obtained and compared to the literature data for extended Pt surfaces.

8.
Toxicon ; 41(1): 65-70, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12467663

ABSTRACT

The effect of sodium dodecyl sulfate (SDS) upon the conformation and hemolytic activity of St I and St II strongly depends on its concentration. At relatively low surfactant concentrations (ca. 0.5-5mM range) the surfactant leads to the formation of aggregates, as suggested by the turbidity observed even at relatively low (micromolar range) protein concentrations. In this surfactant range, the proteins show an increase in intrinsic fluorescence intensity and reduced quenching by acrylamide, with an almost total loss of its hemolytic activity. At higher surfactant concentrations the protein adducts disaggregates. This produces a decrease in fluorescence intensity, increase in quenching efficiency by acrylamide, loss of the native tertiary conformation (as reported by the near UV-CD spectra), and increase in alpha-helix content (as evidenced by the far UV-CD spectra). However, and in spite of these substantial changes, the toxins partially recover their hemolytic activity. The reasons for this recovering of the activity at high surfactant concentrations is discussed.


Subject(s)
Cnidarian Venoms/pharmacology , Hemolysin Proteins/pharmacology , Hemolysis/drug effects , Sodium Dodecyl Sulfate/pharmacology , Surface-Active Agents/pharmacology , Animals , Circular Dichroism , Cnidarian Venoms/chemistry , Dose-Response Relationship, Drug , Erythrocytes/drug effects , Hemolysin Proteins/chemistry , Humans , Organic Chemicals , Protein Conformation/drug effects , Sea Anemones , Sodium Dodecyl Sulfate/administration & dosage , Spectrometry, Fluorescence , Surface-Active Agents/administration & dosage
9.
J Protein Chem ; 21(6): 401-5, 2002 Aug.
Article in English | MEDLINE | ID: mdl-12492150

ABSTRACT

N-hexadecyl-N-N'-dimethyl-3-ammonio-1-propane-sulfonate (BPS) is a zwitterionic surfactant that readily binds to sticholysins I and II, two sea toxins isolated from Stichodactyla helianthus. The binding constants, evaluated from changes in fluorescence intensities elicited by the surfactant, are approximately 0.5-0.7 microM(-1). The binding of the surfactant changes the conformation of the tertiary protein, without significant changes in its secondary structure, as reported from far-ultraviolet circular dichroism spectra. The changes elicited by HPS lead to loss of the native conformation (as reported from near-ultraviolet circular dichroism spectra) and to a shift of the intrinsic protein fluorescence toward longer wavelengths, an increase in fluorescence intensities and lifetimes, and a faster quenching by acrylamide. All these changes are indicative of a more expanded tertiary conformation. Despite this, the toxins fully retain their hemolytic activities, indicating that spectroscopic changes can be poor predictors of toxin activity.


Subject(s)
Cnidaria/chemistry , Hemolysis/drug effects , Surface-Active Agents/pharmacology , Toxins, Biological/pharmacology , Animals , Circular Dichroism , Protein Structure, Secondary , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet , Surface-Active Agents/metabolism , Toxins, Biological/chemistry , Toxins, Biological/isolation & purification
10.
Peptides ; 23(1): 65-70, 2002 Jan.
Article in English | MEDLINE | ID: mdl-11814619

ABSTRACT

Angiotensin II (AngII) and bradykinin (BK) derivatives containing the TOAC (2,2,6,6-tetramethylpiperidine-N-oxyl-4-amino-4-carboxylic acid) spin label were synthesized by solid phase methodology. Ammonium hydroxide (pH 10, 50 degrees C, l h) was the best means for reverting nitroxide protonation occurring during peptide cleavage. EPR spectra yielded rotational correlation times for internally labeled analogs that were nearly twice as large as those of N-terminally labeled analogs. Except for TOAC(1)-AngII and TOAC(0)-BK, which showed high intrinsic activities, other derivatives were inactive in smooth muscle preparations. These active paramagnetic analogs may be useful for conformational studies in solution and in the presence of model and biological membranes.


Subject(s)
Angiotensins/chemistry , Bradykinin/chemistry , Cyclic N-Oxides/pharmacology , Muscle, Smooth/cytology , Nitric Oxide/chemistry , Spin Labels , Ammonium Hydroxide , Animals , Aorta/metabolism , Biological Assay , Bradykinin/analogs & derivatives , Dose-Response Relationship, Drug , Electron Spin Resonance Spectroscopy , Female , Guinea Pigs , Hydroxides/pharmacology , Ileum/metabolism , Male , Muscle, Smooth/drug effects , Muscle, Smooth/metabolism , Peptide Biosynthesis , Peptides/chemistry , Protein Conformation , Rabbits , Rats , Time Factors , Uterus/metabolism
11.
Chem Pharm Bull (Tokyo) ; 49(8): 1027-9, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11515572

ABSTRACT

The stable free radical 2,2,6,6-tetramethylpiperidine-N-oxyl-4-amino-4-carboxylic acid (TOAC) is the only spin labeled amino acid that has been used to date to successfully label peptide sequences for structural studies. However, severe difficulty in coupling the subsequent amino acid has been the most serious shortcoming of this paramagnetic marker. This problem stems from the low nucleophilicity of TOAC's amine group towards the acylation reaction during peptide chain elongation. The present report introduces the alternative beta-amino acid 2,2,5,5-tetramethylpyrrolidine-N-oxyl-3-amino-4-carboxylic acid (POAC), potentially useful in peptide and protein chemistry. Investigations aimed at addressing the stereochemistry of this cyclic molecule through X-ray diffraction measurements of crystalline and bulk samples revealed that it consists only of the trans conformer. The 9-fluorenylmethyloxycarbonyl group (Fmoc) was chosen for temporary protection of the POAC amine function, allowing insertion of the probe at any position in a peptide sequence. The vasoactive octapeptide angiotensin II (All, DRVYIHPF) was synthesized by replacing Pro7 with POAC. The reaction of Fmoc-POAC with the peptidyl-resin occurred smoothly, and the coupling of the subsequent amino acid showed a much faster reaction when compared with TOAC. POAC7-AII was obtained in good yield, demonstrating that, in addition to TOAC, POAC is a convenient amino acid for the synthesis of spin labeled peptide analogues. The present findings open the possibility of a wide range of chemical and biological applications for this novel beta-amino acid derivative, including structural investigations involving its differentiated bend-inducing characteristics.


Subject(s)
Amino Acids/chemistry , Cyclic N-Oxides/chemistry , Peptides/chemistry , Proteins/chemistry , Spin Labels/chemical synthesis
12.
Toxicon ; 39(10): 1547-60, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11478962

ABSTRACT

Sticholysins I and II are two highly hemolytic polypeptides purified from the Caribbean Sea anemone Stichodactyla helianthus. Their high sequence homology (93%) indicates that they correspond to isoforms of the same hemolysin. The spectroscopic measurements show a close similarity in the secondary structure content, conformation and stability of both toxins. Exposure of the toxins to high pHs (>11), a free radical source (AAPH), urea or temperature produce permanent changes in the toxin that lead to a significant loss of HA. It is significant to note that this loss of hemolytic activity occurs when other indicators, probably with the only exception of near-UV CD spectra, barely detect changes in the protein structure. This emphasizes the sensitivity of the protein function to changes in the macromolecule conformation. The most noticeable difference between both toxins is the considerably higher activity of St II, both measured in terms of erythrocyte internal K(+) exit or hemolysis; which is related to enthalpic factors. This difference is not due to an incomplete association of St I to the membrane. We consider then that the different pore forming capacity of both toxins in erythrocytes can be explained in terms of the difference in charge of the N-terminal fragment, than can considerably reduce the St I insertion rate in the membrane probably due to the negatively charged outer leaflet of the red blood cell, without a significant reduction of its capacity to bind to the cell membrane. This electrostatic effect, together with a slightly more relaxed structure in St II, could explain the higher pore forming capacity of St II in the red blood cell membrane.


Subject(s)
Amidines/metabolism , Cnidarian Venoms/chemistry , Erythrocytes/physiology , Hemolysin Proteins/metabolism , Liposomes/chemistry , Liposomes/metabolism , Neurotoxins/chemistry , Neurotoxins/metabolism , Potassium/physiology , Protein Isoforms/chemistry , Protein Isoforms/metabolism , Sea Anemones/pathogenicity , Animals , Circular Dichroism , Cnidarian Venoms/toxicity , Erythrocytes/drug effects , Hemolysin Proteins/drug effects , Humans , Hydrogen-Ion Concentration , Oxidants/metabolism , Potassium/analysis , Protein Conformation , Protein Structure, Secondary , Sequence Homology, Amino Acid , Spectrometry, Fluorescence , Temperature , Time Factors
13.
Biochim Biophys Acta ; 1510(1-2): 93-105, 2001 Feb 09.
Article in English | MEDLINE | ID: mdl-11342150

ABSTRACT

The interaction of the local anesthetic tetracaine (TTC) with anionic sodium lauryl sulfate (SLS) and zwitterionic 3-(N-hexadecyl-N,N-dimethylammonio)propanesulfonate (HPS) micelles was investigated by fluorescence, spin labeling EPR and small angle X-ray scattering (SAXS). Fluorescence pH titrations allowed the choice of adequate pHs for the EPR and SAXS experiments, where either charged or uncharged TTC would be present. The data also indicated that the anesthetic is located in a less polar environment than its charged counterpart in both micellar systems. EPR spectra evidenced that both anesthetic forms increased molecular organization within the SLS micelle, the cationic form exerting a more pronounced effect. The SAXS data showed that protonated TTC causes an increase in the SLS polar shell thickness, hydration number, and aggregation number, whereas the micellar features are not altered upon incorporation of the uncharged drug. The combined results suggest that the electrostatic interaction between charged TTC and SLS, and the intercalation of the drug in the micellar polar region induce a change in molecular packing with a decrease in the mean cross-sectional area, not observed when the neutral drug sinks more deeply into the micellar hydrophobic domain. In the case of HPS micelles, the EPR spectral changes were small for the charged anesthetic and the SAXS data did not evidence any change in micellar structure, suggesting that this species protrudes more into the aqueous phase due to the lack of electrostatic attractive forces in this system.


Subject(s)
Anesthetics, Local/chemistry , Micelles , Binding Sites , Electron Spin Resonance Spectroscopy , Hydrogen-Ion Concentration , Scattering, Radiation , Spectrometry, Fluorescence , Spin Labels , Tetracaine/chemistry
14.
Environ Microbiol ; 3(11): 710-9, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11846761

ABSTRACT

The catalysts for many microbially mediated environmental processes such as the dechlorination of polychlorinated biphenyls (PCBs) have been difficult to identify by traditional isolation techniques. Numerous, as yet unsuccessful, attempts have been made to isolate and culture the dechlorinating species. To overcome this limitation, amplified rDNA restriction analysis (ARDRA) of a clone library, denaturing gradient gel electrophoresis (DGGE) and terminal restriction fragment length polymorphism (TRFLP) were used concurrently to compare their effectiveness for characterizing an enriched microbial community. These methods were applied to enrichment cultures that selectively dechlorinated double-flanked chlorines in the PCB congener 2,3,4,5 chlorinated biphenyl. The methods have different biases, which were apparent from discrepancies in the relative clone frequencies (ARDRA), band intensities (DGGE) or peak heights (TRFLP) from the same enrichment culture. However, each method was effectively qualitative and identified the same organisms: a low G + C Gram-positive eubacterium, an organism most similar to the green non-sulphur bacteria, an Aminobacterium sp. and a Desulfovibrio sp. Overall, in community fingerprinting and preliminary identification, DGGE proved to be the most rapid and effective tool for the monitoring of microorganisms within a highly enriched culture. TRFLP results corroborated DGGE fingerprint analysis; however, identification required the additional step of creating a clone library. ARDRA provided an in-depth analysis of the community and this technique detected slight intraspecies sequence variation in 16S rDNA. These molecular methods are common in environmental microbiology, but rarely are they compared with the same sample site or culture. In general, all three methods detected similar community profiles, but inherent biases resulted in different detection limits for individual OTUs (operational taxonomic units).


Subject(s)
Bacteria/genetics , Polychlorinated Biphenyls/metabolism , Ampicillin/pharmacology , Anti-Bacterial Agents/pharmacology , Anticarcinogenic Agents/pharmacology , Bacteria/classification , Bacteria/growth & development , Bacteria/metabolism , Chlorine/metabolism , DNA, Bacterial/analysis , DNA, Bacterial/genetics , DNA, Ribosomal/analysis , DNA, Ribosomal/genetics , Electrophoresis/methods , Formates/pharmacology , Fumarates/pharmacology , Molecular Sequence Data , Penicillins/pharmacology , Phylogeny , Polymorphism, Restriction Fragment Length , Vancomycin/pharmacology
15.
Toxicon ; 39(4): 539-53, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11024494

ABSTRACT

Sticholysin II (St II) is a pore forming cytolysin obtained from the sea anemone Stichodactyla helianthus. Incubation of diluted St II solutions at different pHs (ranging from 2.0 to 12) slightly changes the secondary structure of the protein. These changes are particularly manifested at high pH. Similarly, the intrinsic fluorescence of the protein indicates a progressive opening of the protein structure when the pH increases from acidic (2.0) to basic (12). These modifications are only partially reversible and do not produce any significant increase in the small capacity of the protein to bind hydrophobic dyes (ANS or Prodan). Experiments carried out with model membranes show a reduced capacity of binding to egg phosphatidyl choline:sphingomyelin (1:1) liposomes both at low (2.3) and high (11.5) pH. Preincubation of the protein in the 2. 5-9.0 pH range does not modify its hemolytic activity, measured in human red blood cells at pH 7.4. On the other hand, preincubation at pH 11.5 drastically reduces the hemolytic activity of the toxin. This strong reduction takes place without measurable modification of the toxin ability to be adsorbed to the red blood cell surface. This indicates that preincubation at high pH irreversibly reduces the capacity of the toxin to form pores without a significant decrease in its binding capacity. The present results suggest that at pH > or = 10 St II experiences irreversible conformational changes that notably reduce its biological activity. This reduced biological activity is associated with a partial defolding of the protein, which seems to contradict what is expected in terms of a molten globule formalism.


Subject(s)
Cnidarian Venoms/chemistry , Hemolysin Proteins/chemistry , Hemolysis/drug effects , Sea Anemones/pathogenicity , Animals , Circular Dichroism , Cnidarian Venoms/toxicity , Fluorescence , Hemolysin Proteins/toxicity , Humans , Hydrogen-Ion Concentration , Protein Conformation
16.
Biochim Biophys Acta ; 1508(1-2): 210-34, 2000 Nov 23.
Article in English | MEDLINE | ID: mdl-11090827

ABSTRACT

Many pharmacologically active compounds are of amphiphilic (or hydrophobic) nature. As a result, they tend to self-associate and to interact with biological membranes. This review focuses on the self-aggregation properties of drugs, as well as on their interaction with membranes. It is seen that drug-membrane interactions are analogous to the interactions between membranes and classical detergents. Phenomena such as shape changes, vesiculation, membrane disruption, and solubilization have been observed. At the molecular level, these events seem to be modulated by lipid flip-flop and formation of non-bilayer phases. The modulation of physicochemical properties of drugs by self-association and membrane binding is discussed. Pathological consequences of drug-membrane interaction are described. The mechanisms of drug solubilization by surfactants are reviewed from the physicochemical point of view and in relation to drug carrying and absorption by the organism.


Subject(s)
Cell Membrane/chemistry , Surface-Active Agents/chemistry , Erythrocyte Membrane/chemistry , Kinetics , Lipid Bilayers/chemistry , Micelles , Molecular Structure , Prodrugs/chemistry , Solubility
17.
Biochemistry ; 38(40): 13279-87, 1999 Oct 05.
Article in English | MEDLINE | ID: mdl-10529202

ABSTRACT

Ca2+ and P(i) accumulation by mitochondria triggers a number of alterations leading to nonspecific increase in inner membrane permeability [Kowaltowski, A. J., et al. (1996) J. Biol. Chem. 271, 2929-2934]. The molecular nature of the membrane perturbation that precedes oxidative damage is still unknown. EPR spectra of spin probes incorporated in submitochondrial particles (SMP) and in model membranes suggest that Ca(2+)-cardiolipin (CL) complexation plays an important role. Ca(2+)-induced lipid domain formation was detected in SMP but not in mitoplasts, in SMP extracted lipids, or in CL-containing liposomes. The results were interpreted in terms of Ca2+ sequestration of CL tightly bound to membrane proteins, in particular the ADP-ATP carrier, and formation of CL-enriched strongly immobilized clusters in lipid shells next to boundary lipid. The in-plane lipid and protein rearrangement is suggested to cause increased reactive oxygen species production in succinate-supplemented, antimycin A-poisoned SMP, favoring the formation of carbon-centered radicals, detected by EPR spin trapping. Removal of tightly bound CL is also proposed to cause protein aggregation, facilitating intermolecular thiol oxidation. Lipid peroxidation was also monitored by the disappearance of the nitroxide EPR spectrum. The decay was faster for nitroxides in a more hydrophobic environment, and was inhibited by butylated hydroxytoluene, by EGTA, or by substituting Mg2+ for Ca2+. In addition, Ca2+ caused an increase in permeability, evidenced by the release of carboxyfluorescein from respiring SMP. The results strongly support Ca2+ binding to CL as one of the early steps in the molecular mechanism of Ca(2+)-induced nonspecific inner mitochondrial membrane permeabilization.


Subject(s)
Calcium/physiology , Electron Transport/physiology , Lipid Metabolism , Reactive Oxygen Species/metabolism , Submitochondrial Particles/metabolism , Animals , Cattle , Cell Compartmentation , Cell Membrane Permeability , Electron Spin Resonance Spectroscopy , Fluoresceins/metabolism , Intracellular Membranes/metabolism , Intracellular Membranes/physiology , Kinetics , Lipid Peroxidation , Lipids/chemistry , Mitochondria, Heart/chemistry , Mitochondria, Heart/metabolism , Protein Structure, Tertiary , Spectrometry, Fluorescence , Spin Trapping , Submitochondrial Particles/chemistry
18.
J Biol Chem ; 274(1): 227-35, 1999 Jan 01.
Article in English | MEDLINE | ID: mdl-9867834

ABSTRACT

The structural bases that render the third intracellular loop (i3) of the rat angiotensin II AT1A receptor one of the cytoplasmic domains responsible for G-protein coupling are still unknown. The three-dimensional structures of two overlapping peptides mapping the entire i3 loop and shown to differently interact with purified G-proteins have been obtained by simulated annealing calculations, using NMR-derived constraints collected in 70% water/30% trifluoroethanol solution. While the NH2-terminal half, Ni3, residues 213-231, adopts a stable amphipathic alpha-helix, extending over almost the entire peptide, a more flexible conformation is found for the COOH-terminal half, Ci3, residues 227-242. For this peptide, a cis-trans isomerization around the Lys6-Pro7 peptide bond generates two exchanging isomers adopting similar conformations, with an alpha-helix spanning from Asn9 to Ile15 and a poorly defined NH2 terminus. A quite distinct structural organization is found for the sequence EIQKN, common to Ni3 and Ci3. The data do suggest that the extension and orientation of the amphipathic alpha-helix, present in the proximal part of i3, may be modulated by the distal part of the loop itself through the Pro233 residue. A molecular model where this possibility is considered as a mechanism for G-protein selection and coupling is presented.


Subject(s)
Angiotensin II/metabolism , GTP-Binding Proteins/metabolism , Receptors, Angiotensin/chemistry , Amino Acid Sequence , Animals , Circular Dichroism , Magnetic Resonance Spectroscopy , Protein Binding , Protein Structure, Secondary , Rats , Receptors, Angiotensin/metabolism
19.
Free Radic Res ; 28(3): 301-18, 1998 Mar.
Article in English | MEDLINE | ID: mdl-9688216

ABSTRACT

In the present study we show that K+/H+ hydroxyl-containing ionophores lasalocid-A (LAS) and nigericin (NIG) in the nanomolar concentration range, inhibit Fe2+-citrate and 2,2'-azobis(2-amidinopropane) dihydrochloride (ABAP)-induced lipid peroxidation in intact rat liver mitochondria and in egg phosphatidylcholine (PC) liposomes containing negatively charged lipids--dicetyl phosphate (DCP) or cardiolipin (CL)--and KCl as the osmotic support. In addition, monensin (MON), a hydroxyl-containing ionophore with higher affinity for Na+ than for K+, promotes a similar effect when NaCl is the osmotic support. The protective effect of the ionophores is not observed when the osmolyte is sucrose. Lipid peroxidation was evidenced by mitochondrial swelling, antimycin A-insensitive O2 consumption, formation of thiobarbituric acid-reactive substances (TBARS), conjugated dienes, and electron paramagnetic resonance (EPR) spectra of an incorporated lipid spin probe. A time-dependent decay of spin label EPR signal is observed as a consequence of lipid peroxidation induced by both inductor systems in liposomes. Nitroxide destruction is inhibited by butylated hydroxytoluene, a known antioxidant, and by the hydroxyl-containing ionophores. In contrast, valinomycin (VAL), which does not possess alcoholic groups, does not display this protective effect. Effective order parameters (Seff), determined from the spectra of an incorporated spin label are larger in the presence of salt and display a small increase upon addition of the ionophores, as a result of the increase of counter ion concentration at the negatively charged bilayer surface. This condition leads to increased formation of the ion-ionophore complex, the membrane binding (uncharged) species. The membrane-incorporated complex is the active species in the lipid peroxidation inhibiting process. Studies in aqueous solution (in the absence of membranes) showed that NIG and LAS, but not VAL, decrease the Fe2+-citrate-induced production of radicals derived from piperazine-based buffers, demonstrating their property as radical scavengers. Both Fe2+-citrate and ABAP promote a much more pronounced decrease of LAS fluorescence in PC/CL liposomes than in dimyristoyl phosphatidylcholine (DMPC, saturated phospholipid)-DCP liposomes, indicating that the ionophore also scavenges lipid peroxyl radicals. A slow decrease of fluorescence is observed in the latter system, for all lipid compositions in sucrose medium, and in the absence of membranes, indicating that the primary radicals stemming from both inductors also attack the ionophore. Altogether, the data lead to the conclusion that the membrane-incorporated cation complexes of NIG, LAS and MON inhibit lipid peroxidation by blocking initiation and propagation reactions in the lipid phase via a free radical scavenging mechanism, very likely due to the presence of alcoholic hydroxyl groups in all three molecules and to the attack of the aromatic moiety of LAS.


Subject(s)
Free Radical Scavengers/metabolism , Ionophores/pharmacology , Lasalocid/pharmacology , Lipid Metabolism , Lipid Peroxidation/drug effects , Mitochondria, Liver/metabolism , Nigericin/pharmacology , Amidines/pharmacology , Animals , Citric Acid , Electron Spin Resonance Spectroscopy , Ferrous Compounds/pharmacology , Liposomes/metabolism , Mitochondrial Swelling/drug effects , Oxidants/pharmacology , Oxygen Consumption , Rats , Rats, Wistar , Spin Labels , Thiobarbituric Acid Reactive Substances/metabolism
20.
Toxicon ; 36(1): 165-78, 1998 Jan.
Article in English | MEDLINE | ID: mdl-9604290

ABSTRACT

Sticholysin I (St I) is a potent cytolytic polypeptide purified from the Caribbean sea anemone Stichodactyla helianthus. The hemolytic activity of sticholysin is potentiated by its preincubation at high ionic strengths. In the present work the mechanism of the potentiating action of the medium ionic strength on the toxin hemolytic capacity is investigated. It is suggested that preincubation with high saline concentration induces a transition of St I to a more relaxed conformation that facilitates the lytic process.


Subject(s)
Cnidarian Venoms/pharmacology , Hemolysin Proteins/pharmacology , Sea Anemones/chemistry , Animals , Circular Dichroism , Cnidarian Venoms/chemistry , Osmolar Concentration , Protein Conformation , Spectrometry, Fluorescence
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