Results from six generations of selection for intramuscular fat in Duroc swine using real-time ultrasound. II. Genetic parameters and trends.

Design of breeding programs requires knowledge of variance components that exist for traits included in specific breeding goals and the genetic relationships that exist among traits of economic importance. A study was conducted to evaluate direct and correlated genetic responses to selection for intramuscular fat (IMF) and to estimate genetic parameters for economically important traits in Duroc swine. Forty gilts were purchased from US breeders and randomly mated for 2 generations to boars available in regional boar studs to develop a base population of 56 litters. Littermate pairs of gilts from this population were randomly assigned to a select line (SL) or control line (CL) and mated to the same boar to establish genetic ties between lines. In the SL, the top 10 boars and 75 gilts were selected based on IMF EBV obtained from a bivariate animal model that included IMF evaluated on the carcass and IMF predicted via ultrasound. One boar from each sire family and 50 to 60 gilts representing all sire families were randomly selected to maintain the CL. Carcass and ultrasound IMF were both moderately heritable (0.31 and 0.38, respectively). Moderate to high genetic relationships were estimated among carcass backfat and meat quality measures of IMF, Instron tenderness, and objective loin muscle color. Based on estimates obtained in this study, more desirable genetic merit for pH is associated with greater genetic value for loin color, tenderness, and sensory characteristics. Intramuscular fat measures obtained on the carcass and predicted using ultrasound technology were highly correlated (r(g) = 0.86 from a 12-trait analysis; r(g) = 0.90 from a 5-trait analysis). Estimated genetic relationships among IMF measures and other traits evaluated were generally consistent. Intramuscular fat measures were also genetically associated with Instron tenderness and flavor score in a desirable direction. Direct genetic response in IMF measures observed in the SL corresponded to a significant decrease in EBV for carcass loin muscle area (-0.90 cm(2) per generation) and an increase in carcass backfat EBV (0.98 mm per generation). Selection for IMF has led to more desirable EBV for objective tenderness and has had an adverse effect on additive genetic merit for objective loin color.

An evaluation of four candidate genes for use in selection programmes aimed at increased intramuscular fat in Duroc swine.

A sufficient level of intramuscular fat (IMF) is needed to enhance consumer acceptance of pork products, and is currently receiving greater attention within swine genetic improvement programmes. An examination of previously described and novel genetic variants within candidate genes for IMF deposition was performed to evaluate potential use of genetic markers in marker-assisted selection (MAS). Biological candidate genes implicated to play a role in adipogenesis were investigated within two different lines of purebred Duroc pigs. These included MC4R, FABP3, DLK1, and TCF7L2. Significant variation in IMF within the control line was described by the MC4R genotype and a novel BsrfI single nucleotide polymorphism within the FABP3 gene. Genetic markers for DLK1 and TCF7L2 evaluated in this population are not currently recommended for selection in Duroc swine. Existence of MC4R and FABP3 mutations may be useful markers in MAS aimed at IMF improvement, provided that gene effects are segregating and the presence of an association is detected within the population. However, additional work to confirm the use of the investigated genetic markers in selection programmes is needed.

Results from six generations of selection for intramuscular fat in Duroc swine using real-time ultrasound. I. Direct and correlated phenotypic responses to selection.

A study was conducted to evaluate the efficacy of selection for intramuscular fat (IMF) in a population of purebred Duroc swine using real-time ultrasound. Forty gilts were purchased from US breeders and randomly mated for 2 generations to boars available in regional boar studs, resulting in a base population of 56 litters. Littermate pairs of gilts from this population were randomly assigned to a select line (SL) or control line (CL) and mated to the same sire to establish genetic ties between lines. At an average BW of 114 kg, a minimum of 4 longitudinal ultrasound images were collected 7 cm off-midline across the 10th to 13th ribs of all pigs for the prediction of IMF (UIMF). At least 1 barrow or gilt was slaughtered from each litter, and carcass data were collected. A sample of the LM from the 10th to 11th rib interface was analyzed for carcass IMF (CIMF). Breeding values for IMF were estimated by fitting a 2-trait (UIMF and CIMF) animal model in MATVEC. In the SL, selection in each subsequent generation was based on EBV for IMF with the top 10 boars and top 75 gilts used to produce the next generation. One boar from each sire family and 50 to 60 gilts representing all sire families were randomly selected to maintain the CL. Through 6 generations of selection, an 88% improvement in IMF has been realized (4.53% in SL vs. 2.41% in CL). Results of this study revealed no significant correlated responses in measures of growth performance. However, 6 generations of selection for IMF have yielded correlated effects of decreased loin muscle area and increased backfat. Additionally, the SL obtained more desirable objective measures of tenderness and sensory evaluations of flavor and off-flavor. Meat quality characteristics of pH, water holding capacity, and percent cooking loss were not significantly affected by selection for IMF. Selection for IMF using real-time ultrasound is effective but may be associated with genetic ramifications for carcass composition traits. Intramuscular fat may be used in purebred Duroc swine breeding programs as an indicator trait for sensory traits that influence consumer acceptance; however, rapid improvement should not be expected when simultaneous improvement in other trait categories is also pursued.

Deposition rates and accretion patterns of intramuscular fat, loin muscle area, and backfat of Duroc pigs sired by boars from two time periods.

A study was conducted to evaluate differences in performance and in carcass composition and tissue deposition rates between purebred Duroc pigs sired by boars currently available and those sired by boars from the mid-1980s. Two lines were developed by randomly allocating littermate and half-sib pairs of females to matings by current time period (CTP) or old time period (OTP) boars. Pigs from 2 replications were placed on test at a group mean BW of 63.5 kg. Serial ultrasonic measurements of the 10th-rib LM area (LMA), off-midline backfat (BF10), and intramuscular fat percentage (IMF) were collected every 2 wk in the first replication and used to assess deposition rate differences. Off-test ultrasonic LMA, BF10, and IMF measurements from a total of 557 pigs from 23 CTP sires and 232 pigs from 15 OTP sires across 2 replications and at a mean BW of 109 kg were evaluated. All available barrows and randomly selected gilts (n = 277) were sent to a commercial abattoir, and carcass measurements of 10th-rib backfat, last-rib backfat, last lumbar backfat, and LMA were collected. Analysis of serial backfat measurements revealed a linear relationship between back-fat and BW between 73 and 118 kg for pigs from both time periods. Pigs sired by OTP boars deposited more backfat (P < 0.05) at a faster rate than pigs sired by CTP boars over the entire test period. A curvilinear cumulative tissue deposition pattern was revealed for ultrasonically estimated LMA and IMF within both time periods. Significant linear and quadratic regression coefficient differences between lines indicated that pigs sired by CTP boars deposited more LMA and less IMF per kilogram of BW gain than pigs sired by OTP boars. Pigs sired by CTP boars had more LMA and less BF10 (P < 0.05), whereas pigs sired by OTP boars had more IMF (P = 0.04). Carcass evaluation revealed more (P < 0.01) carcass measurements of LMA and less (P < 0.05) carcass measurements of 10th-rib backfat, carcass measurements of last-rib backfat, and carcass measurements of last lumbar backfat for pigs sired by CTP boars. No difference (P > 0.05) between the time periods was found for ADG over the entire test period. Results from this study illustrate that significant progress in carcass composition has been realized within the Duroc breed since the mid-1980s. The long-term selection response in carcass leanness has also resulted in changes in deposition rates of correlated traits such as LMA and IMF.

Effect of long-term selection for increased leanness on meat and eating quality traits in Duroc swine.

A study was conducted to evaluate differences in meat and eating quality traits between purebred Duroc pigs sired by boars currently available and pigs sired by boars from the mid 1980s. Two lines were developed by randomly allocating littermate and half-sib pairs of females to matings by current time period (CTP) or old time period (OTP) boars. Matings by CTP boars were made using fresh semen, and matings by OTP boars were via frozen semen. All available barrows and randomly selected gilts were sent to a commercial abattoir and used for meat and eating quality evaluation. A total of 178 pigs from 23 CTP sires and 99 pigs from 15 OTP sires, across 2 replications and at a mean live weight of 109 kg, were slaughtered and analyzed. Chemical intramuscular fat percentage was determined by lab analysis of a slice from the LM at the 10th rib. Additional meat and eating quality traits measured on the LM were Minolta reflectance and Hunter L color (24 h); pH (24 h and 7 d); water-holding capacity; subjective visual scores for color, marbling, and firmness (48 h); Instron tenderness; cooking loss; and trained sensory panel evaluations (7 d). Time period differences were assessed by use of a mixed model that included fixed effects of sire time period, replication, sex, contemporary group, and the interaction of sex x time period. The random effect of dam and the random effect of sire nested within time period were also included. Loins from pigs sired by OTP boars had greater intramuscular fat (3.48 vs. 3.09%) and visual marbling scores (3.54 vs. 3.07), required less Instron force (5.31 vs. 5.98 kg) to compress, and had darker visual color scores (4.09 vs. 3.87) compared with loins from pigs sired by CTP boars (P < 0.05). No differences were observed between time periods for Minolta reflectance, Hunter L (24 h), water-holding capacity, pH (24 h and 7 d), or subjective firmness scores. Trained sensory evaluations revealed more pork flavor and less off-flavor (P < 0.05) for OTP-sired pigs; however, no differences in tenderness score, juiciness score, chewiness score, or cooking loss were found between lines. Long-term selection response in carcass composition has been at the expense of meat and eating quality traits.

Comparison of three models to estimate breeding values for percentage of loin intramuscular fat in Duroc swine.

Three selection models were evaluated to compare selection candidate rankings based on EBV and to evaluate subsequent effects of model-derived EBV on the selection differential and expected genetic response in the population. Data were collected from carcass- and ultrasound-derived estimates of loin i.m. fat percent (IMF) in a population of Duroc swine under selection to increase IMF. The models compared were Model 1, a two-trait animal model used in the selection experiment that included ultrasound IMF from all pigs scanned and carcass IMF from pigs slaughtered to estimate breeding values for both carcass (C1) and ultrasound IMF (U1); Model 2, a single-trait animal model that included ultrasound IMF values on all pigs scanned to estimate breeding values for ultrasound IMF (U2); and Model 3, a multiple-trait animal model including carcass IMF from slaughtered pigs and the first three principal components from a total of 10 image parameters averaged across four longitudinal ultrasound images to estimate breeding values for carcass IMF (C3). Rank correlations between breeding value estimates for U1 and C1, U1 and U2, and C1 and C3 were 0.95, 0.97, and 0.92, respectively. Other rank correlations were 0.86 or less. In the selection experiment, approximately the top 10% of boars and 50% of gilts were selected. Selection differentials for pigs in Generation 3 were greatest when ranking pigs based on C1, followed by U1, U2, and C3. In addition, selection differential and estimated response were evaluated when simulating selection of the top 1, 5, and 10% of sires and 50% of dams. Results of this analysis indicated the greatest selection differential was for selection based on C1. The greatest loss in selection differential was found for selection based on C3 when selecting the top 10 and 1% of boars and 50% of gilts. The loss in estimated response when selecting varying percentages of boars and the top 50% of gilts was greatest when selection was based on C3 (16.0 to 25.8%) and least for selection based on U1 (1.3 to 10.9%). Estimated genetic change from selection based on carcass IMF was greater than selection based on ultrasound IMF. Results show that selection based on a combination of ultrasonically predicted IMF and sib carcass IMF produced the greatest selection differentials and should lead to the greatest genetic change.

Genetic and phenotypic relationships between individual subcutaneous backfat layers and percentage of longissimus intramuscular fat in Duroc swine.

Progeny (n = 589) of randomly mated Duroc pigs were used to determine the genetic and phenotypic relationships between individual s.c. backfat layers and i.m. fat percent (IMF) of the longissimus. Five days before slaughter, cross-sectional ultrasound images were collected at the 10th rib by a National Swine Improvement Federation-certified ultrasound technician using an ultrasound machine (Aloka 500 SSD) fitted with a 12-cm linear array transducer. Off-midline backfat (SBF) and loin muscle area (SLMA) were measured. Individual s.c. backfat layers were measured at the same location: outer (OBF), middle (MBF), and inner (IBF). Off-midline backfat (CBF) and loin muscle area (CLMA) were measured on the carcass 24 h postmortem. A slice from the 10th rib of the loin muscle was obtained for determination of IMF. Heritability estimates and genetic correlations were calculated fitting all possible two-trait animal models in MATVEC (Wang et al., 2003). The heritabilities for OBF, MBF, IBF, CBF, SBF, and IMF were 0.63, 0.45, 0.53, 0.48, 0.44, and 0.69, respectively. The genetic correlations of OBF, MBF, and IBF with IMF were 0.36, 0.16, and 0.28, respectively, and the genetic correlations of CBF and SBF with IMF were 0.25 and 0.27, respectively. Genetic correlations between OBF and MBF, OBF and IBF, and MBF and IBF were 0.43, 0.45, and 0.67, respectively. Results demonstrate that individual backfat layers are highly heritable, of similar magnitude to total backfat, and have similar genetic correlations with IMF. Individual backfat layers could become candidate traits for implementation into a multiple-trait genetic evaluation to improve IMF, while minimizing the detrimental effect on total backfat depth.