ABSTRACT
One of the main problems that arise in the assessment of air quality in an area is to estimate the number of representative sampling points of each microenvironment within it. We present a new model that reduces the variability and increases the quality of the comparison of the sampling points. The study is based on the comparison between a city in eastern Spain, Vila-real, a macro city in México, Monterrey and the Piemonte region regarding the assessment of PM10 in microenvironments. Vila-real is located in the province of Castellón. This province is a strategic area in the framework of European Union (EU) pollution control. On the other hand, Monterrey in México, located in the northern state of Nuevo León, has several problems with particulate material in the atmosphere produced by the extraction of building materials in the hill that surround the city. Finally, the Piemonte region, which is located in the north of Italy, has to be in consideration due to higher concentrations of PM10 in the Po river basin. In the case of Vila-real the PM10 samples were collected by a medium volume sampler according to European regulations. Particle concentration levels were determined gravimetrically (EN 12341:1999). In the case of Monterrey the PM10 concentrations were determined by Beta Ray Attenuation according to US-EPA regulations. In the Piemonte region, the average concentration of PM10 was also obtained by means of the Beta Ray Attenuation as well as using gravimetric instruments. The methodology carried out in this paper is a useful tool for developing future Air Quality Plans in other industrialised areas.
Subject(s)
Air Pollutants/analysis , Air Pollution/statistics & numerical data , Environmental Monitoring , Particulate Matter/analysis , Air Pollution/analysis , Cities , Dust , Industrial Development , Italy , Mexico , Particle Size , SpainABSTRACT
Biological invasions are excellent opportunities to study the evolutionary forces leading to the adaptation of a species to a new habitat. Knowledge of the introduction history of colonizing species helps tracking colonizing routes and assists in defining management strategies for invasive species. The Palearctic species Drosophila subobscura is a good model organism for tracking colonizations since it was detected in Chile and western North America three decades ago and later on in the Atlantic coast of Argentina. To unravel the origin of the Argentinean colonizers two populations have been analysed with several genetic markers. Chromosomal arrangements and microsatellite alleles found in Argentina are almost similar to those observed in Chile and USA. The lethal allelism test demonstrates that the lethal gene associated with the O(5) inversions in Argentina is identical to that found in Chile and USA, strongly supporting the hypothesis that all the American colonizing populations originated from the same colonization event. A secondary bottleneck is detected in the Argentinean populations and the genetic markers suggest that these populations originated from the invasion of 80-150 founding individuals from Chile.
Subject(s)
Animal Migration , Drosophila/physiology , Animals , Argentina , Chromosomes/genetics , Drosophila/classification , Genes, Lethal/genetics , Genetics, Population , Microsatellite Repeats/genetics , PhylogenyABSTRACT
Latitudinal clinal variation in wing size and shape has evolved in North American populations of Drosophila subobscura within about 20 years since colonization. While the size cline is consistent to that found in original European populations (and globally in other Drosophila species), different parts of the wing have evolved on the two continents. This clearly suggests that 'chance and necessity' are simultaneously playing their roles in the process of adaptation. We report here rapid and consistent thermal evolution of wing shape (but not size) that apparently is at odds with that suggestion. Three replicated populations of D. subobscura derived from an outbred stock at Puerto Montt (Chile) were kept at each of three temperatures (13, 18 and 22 degrees C) for 1 year and have diverged for 27 generations at most. We used the methods of geometric morphometrics to study wing shape variation in both females and males from the thermal stocks, and rates of genetic divergence for wing shape were found to be as fast or even faster than those previously estimated for wing size on a continental scale. These shape changes did not follow a neat linear trend with temperature, and are associated with localized shifts of particular landmarks with some differences between sexes. Wing shape variables were found to differ in response to male genetic constitution for polymorphic chromosomal inversions, which strongly suggests that changes in gene arrangement frequencies as a response to temperature underlie the correlated changes in wing shape because of gene-inversion linkage disequilibria. In fact, we also suggest that the shape cline in North America likely predated the size cline and is consistent with the quite different evolutionary rates between inversion and size clines. These findings cast strong doubts on the supposed 'unpredictability' of the geographical cline for wing traits in D. subobscura North American colonizing populations.
Subject(s)
Biological Evolution , Chromosome Inversion , Drosophila/genetics , Temperature , Wings, Animal/anatomy & histology , Analysis of Variance , Animals , Biometry , Body Weights and Measures , Chile , Drosophila/anatomy & histology , Female , Geography , MaleABSTRACT
About 20 years ago Drosophila subobscura, a native Palearctic species, colonized both North and South America. In Palearctic populations lethal genes are not associated in general with particular chromosomal arrangements. In colonizing populations they are not randomly distributed and usually are associated to a different degree with chromosomal arrangements caused by the founder event. The persistence of two lethal genes in the colonizing populations, one completely associated with the O(5) inversion and the other partially associated with the O(3+4+7) arrangement, has been analyzed. In all populations studied (five North American and six South American) the observed frequency of the lethal gene completely associated with the O(5) inversion is higher than expected, the difference being statistically significant in all South American and one North American populations. The observed frequency of the lethal gene partially associated with the O(3+4+7) arrangement is also significantly higher than expected. Taking into account that the O(5) inversion exhibits significant latitudinal clines both in North and South America, an overdominant model favoring the heterokaryotypes seems to be in operation. From this model, a polynomial expression has been developed that allows us to estimate the relative fitness and the coefficient of selection against all karyotypes not carrying the O(5) inversion. The relative fitness of the O(5) heterokaryotypes is higher in South American than in North American populations. Furthermore, the observed frequencies of the lethal genes studied are in general very close to those of the equilibrium. This case is an outstanding demonstration in nature of an heterotic effect of chromosomal segments associated with lethal genes on a large geographic scale.
Subject(s)
Chromosomes , Drosophila/genetics , Genes, Lethal , Animals , North America , Population Growth , South AmericaABSTRACT
A method for the characterization of proteins separated by isoelectric focusing in carrier ampholytes (CA-IEF) or immobilized pH gradient (IPG) gels by in-gel digestion and mass spectrometry is described. Proteins are detected by an improved imidazole-Sodium dodecyl sulfate (SDS)-zinc staining adapted for IEF and IPG gels. Sensitivity is close to that of mass spectrometry-compatible silver staining, but simpler and faster. Proteins were digested in imidazole-SDS-zinc stained CA-IEF and IPG gels in the presence of a zinc-chelating agent. Mass spectra were clearly interpretable as carrier ampholytes which were efficiently removed before digestion; high-sequence coverage that allowed isoform characterization was obtained by analyzing both the aqueous and the organic phase extracts.
Subject(s)
Proteins/analysis , Ampholyte Mixtures , Animals , Humans , Hydrogen-Ion Concentration , Imidazoles , Isoelectric Focusing/methods , Protein Isoforms/analysis , ZincABSTRACT
The proven ability of gel electrophoresis to simultaneously resolve, in a single experiment, many components from complex biological samples, has determined its preference over a variety of well-established chromatographic methods. Therefore, procedures placed at the interface between gel separation and microanalysis have earned increasing significance with respect to the overall success of the microanalytical strategy. The first of these procedures is the detection technique. The most important requirement for compatibility with further analysis or bioapplications is that the staining method does not compromise the chemical integrity and the biological properties of micropurified biomolecules. Procedures for negative detection of proteins with metal salts that have been proven to comply with this condition have been known for about 15 years. Only recently have these procedures been extended to the field of nucleic acids and lipopolysaccharides. The focus of this review is to chronicle the development and current status of the negative or reverse stain procedure based on the in-gel reaction of imidazole with zinc salts and its applications forthe micropurification and analysis of unmodified proteins, nucleic acids and bacterial lipopolysaccharides. We highlight the common aspects in the detection of the three types of biomolecules, and their applications to structural and biological analyses. Emphasis is given on the mechanism underlying imidazole-zinc staining, as it contributes to a deeper understanding of a general detection mechanism with metal salts. Finally, we discuss the latest applications of the techniques in proteomics and their possible impact on the characterization of gel-separated single components from complex lipopolysaccharides.
Subject(s)
Electrophoresis, Polyacrylamide Gel/methods , Imidazoles , Zinc , Coloring Agents , Endopeptidases/metabolism , Lipopolysaccharides/analysis , Nucleic Acids/analysis , Protein Renaturation , Proteins/analysisABSTRACT
We report a 12 years old male with a history of excessive alcohol intake, that developed a severe liver failure after the use of acetaminophen in therapeutic doses. He presented with encephalopathy, jaundice, fever and an upper gastrointestinal bleeding. Serum aspartate aminotransferase values were 5,250 IU/L. The patient received supportive care and oral corticosteroids, remained severely compromised for 72 hours and had a good evolution thereafter. The association of acetaminophen use and excessive alcohol intake in a patient who developed an acute hepatic failure and the absence of serological evidence of hepatitis A or B viral infection, support the diagnosis of drug induced liver failure.
Subject(s)
Acetaminophen/poisoning , Alcohol Drinking/adverse effects , Chemical and Drug Induced Liver Injury/etiology , Chemical and Drug Induced Liver Injury/diagnosis , Chemical and Drug Induced Liver Injury/drug therapy , Child , Humans , MaleABSTRACT
Identification and characterization of proteins isolated from natural sources by polyacrylamide gel electrophoresis has become a routine technique. However, efficient sample proteolysis and subsequent peptide extraction is still problematic. Here, we present an improved protocol for the rapid detection of polyacrylamide gel-separated proteins, in situ protein modification, proteolytic digestion and peptide extraction for subsequent protein identification and characterization by capillary high-performance liquid chromatography/tandem mass spectrometry. This simple technique employs the rapid imidazole-zinc reverse stain, in-gel S-pyridylethylation and proteolytic digestion of microcrushed polyacrylamide gel pieces with proteases. This technique obviates the need for buffer exchange or gel lyophilisation due to all of the sample manipulation steps being carried out at near neutral pH and thus lends itself readily to automation.
Subject(s)
Electrophoresis, Polyacrylamide Gel/methods , Imidazoles , Negative Staining/methods , Proteins/isolation & purification , Zinc , Acrylic Resins , Amino Acid Sequence , Animals , Cattle , Chromatography, High Pressure Liquid/methods , Humans , Mass Spectrometry , Molecular Sequence Data , SaltsABSTRACT
Some evidence on the possible use of sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) to elicit antibodies against smooth- or rough-type bacterial lipopolysaccharides (LPS) is shown. Gel-separated LPS were negatively stained with zinc-imidazole to precisely localize the bands of interest under fully reversible conditions. Then the bands of interest were excised and the resulting gel slices washed in a solution of a zinc-complexing agent (e.g., 100 mM EDTA), after which they were extruded through a metal sieve of 32 microm average size contained in a 1 mL syringe, to generate homogeneous gel microparticles. The LPS-containing gel slurries were used directly to immunize female BALB/c mice. Using this procedure, positive mouse polyclonal antibody responses against gel-purified smooth- or rough-LPS forms from Escherichia coli K-235 or Bordetella pertussis were elicited, as tested by a dot-immunoblotting assay. Our results may encourage the use of SDS-PAGE-micropurified LPS to develop optimized immunization procedures for the generation of specific antibodies against LPS bands of defined sizes, and therefore they constitute an intermediate step toward that aim.
Subject(s)
Electrophoresis, Polyacrylamide Gel , Lipopolysaccharides/immunology , Vaccination , Animals , Bordetella pertussis/immunology , Electrophoresis, Polyacrylamide Gel/methods , Escherichia coli/immunology , Female , Lipopolysaccharides/isolation & purification , Mice , Mice, Inbred BALB CABSTRACT
BACKGROUND: Despite the epidemiological importance and the surveillance programs to detect cervix uterine cancer in Chile, its mortality continues to be high. AIM: To perform an audit of all deaths due to cervix uterine cancer, that occurred in a health service of Santiago during 1995. MATERIAL AND METHODS: The clinical records and pathological studies of 46 women, whose death certificates indicated cervix uterine cancer as the cause of death, were audited. RESULTS: In six women, the audit revealed that the cause of death was not a cervix uterine cancer, and they were discarded from further analyses. The higher mortality rate (36/100,000) occurred in women over 64 years old, those living in the poorest community and with less Papanicolaou vaginal smears coverage (La Pintana). The evolution prior to diagnosis was registered in only four women and was of less than one year. Most women consulted in advanced stages of the disease and only 48% were subjected to some sort of treatment (surgery, radiotherapy or chemotherapy). Mean survival was 3 years and mean age at death was 55.5 years old. There was a great lack of clinical and epidemiological information. In only 13 women information about previous Pap smears was registered. CONCLUSIONS: Audit of deaths should be an important component of preventive programs for cervix uterine cancer, and the coverage of Pap smears should be improved.
Subject(s)
Uterine Cervical Neoplasms/mortality , Adult , Age Distribution , Age Factors , Aged , Cause of Death , Chile , Female , Humans , Medical Audit , Middle Aged , Papanicolaou Test , Survival Rate , Urban Health Services/statistics & numerical data , Vaginal Smears/statistics & numerical dataABSTRACT
A simple procedure for elution in water of bacterial lipopolysaccharides (LPS) from sodium dodecyl sulfate-polyacrylamide gels is described. It consists of the combination of three principal steps: first, highly sensitive on-gel LPS detection (1-10 ng/band) with zinc-imidazole (negative or reverse staining); second, washing of the individual LPS band in a solution of a zinc-complexing agent (e.g., 100 mM EDTA); and finally, elution of the LPS (100-200 microliters water for a 0.5-microgram LPS band) from gel microparticles for 3 h at room temperature. Using this procedure, we have successfully eluted a variety of LPS forms from Bordetella pertussis, Escherichia coli 0111:B4, E. coli K-235, Salmonella enteritidis, and Pseudomonas aeruginosa. Elution recovery of rough or semismooth LPS was about 70-80%, while that of smooth LPS was only about 10%. Eluted LPS was biologically active as tested by limulus amebocyte lysate and TNF-alpha assays.
Subject(s)
Lipopolysaccharides/isolation & purification , Acrylic Resins , Bordetella pertussis/chemistry , Bordetella pertussis/immunology , Electrophoresis, Polyacrylamide Gel/methods , Escherichia coli/chemistry , Escherichia coli/immunology , Humans , Limulus Test , Lipopolysaccharides/pharmacology , Microchemistry , Pseudomonas aeruginosa/chemistry , Pseudomonas aeruginosa/immunology , Salmonella enteritidis/chemistry , Salmonella enteritidis/immunology , Tumor Necrosis Factor-alpha/metabolismABSTRACT
A simple, reliable procedure for practically quantitative (90-98%) and fast (< 30 min) elution of proteins from SDS-PA gels is described with reproducible recoveries in the range from 100 to 1 pmol per band, which does not require the inclusion of detergents in the elution buffer. It consists in the combination of (1) highly sensitive on-gel protein detection (50 mol per band) with imidazole-SDS-zinc (reverse staining), (2) crushing of the protein band to produce 32-micron gel particles, and (3) vortexing of the slurry in a solution of a zinc-complexing agent, e.g. glycine 0.5 M or EDTA 100 mM (100 microliters for a 100-pmol BSA band), at room temperature. Eluted proteins can be directly analyzed by RP-HPLC, quantitatively loaded onto a PVDF membrane, or, provided that they are previously renatured on-gel, analyzed by biological activity tests. The application of the procedure to in-solution enrichment of scarce proteins for N-terminal analysis is shown.
Subject(s)
Acrylic Resins , Proteins/isolation & purification , Proteins/physiology , Sodium Dodecyl Sulfate , Amino Acid Sequence , Buffers , Chromatography, High Pressure Liquid/methods , Detergents , Hydrogen-Ion Concentration , Membranes, Artificial , Microchemistry/methods , Polyvinyls , Protein Denaturation , Proteins/analysis , Sensitivity and Specificity , Sequence Analysis/methods , Solutions , Staining and Labeling/methodsABSTRACT
We present a new method for visualizing bacterial lipopolysaccharides (LPS)/lipooligosaccharides (LOS) electrophoresed in sodium dodecyl sulfate-polyacrylamide gels. After electrophoresis, gels are washed in boiling water to appreciably remove remaining electrophoresis reagents, then incubated in 10 mM zinc sulfate for 15 min, and subsequently immersed in 0.2 M imidazole for 3 min. As a result, zinc salts precipitate all over the gel surface except in the zones occupied by LPS/LOS, which appear as transparent, colorless bands. Gels can be stored in distilled water for weeks without loss of the negative image. The sensitivity of this stain is similar to that of silver. We believe that zinc-imidazole may be a suitable nontoxic alternative to silver in the rapid analysis of LPS/LOS by polyacrylamide gel electrophoresis.
Subject(s)
Coloring Agents , Imidazoles/chemistry , Lipopolysaccharides/analysis , Zinc/chemistry , Electrophoresis, Polyacrylamide Gel/methods , Sensitivity and SpecificityABSTRACT
Se presenta un caso de paciente femenino con deformación y edema de tejidos blandos extracraneales de frente y nariz, que fue estudiada mediante TC y RM de cráneo, Angiorresonancia y Angiografía digital. Los hallazgos más relevantes revelan un sinus pericranii medial con drenaje predominante a las venas faciales. Se analizan los aspectos más salientes de esta rara entidad
Subject(s)
Humans , Female , Adult , Cranial Sinuses/abnormalities , Headache/etiology , Veins/abnormalities , Cerebral Veins , Cerebral Veins/abnormalities , Cranial Sinuses , Forehead/pathology , Scalp/pathology , Varicose Veins , Varicose Veins/complicationsABSTRACT
Se presenta un caso de paciente femenino con deformación y edema de tejidos blandos extracraneales de frente y nariz, que fue estudiada mediante TC y RM de cráneo, Angiorresonancia y Angiografía digital. Los hallazgos más relevantes revelan un sinus pericranii medial con drenaje predominante a las venas faciales. Se analizan los aspectos más salientes de esta rara entidad (AU)
Subject(s)
Humans , Female , Adult , Headache/etiology , Veins/abnormalities , Cranial Sinuses/abnormalities , Cranial Sinuses/diagnostic imaging , Varicose Veins/complications , Varicose Veins/diagnostic imaging , Scalp/pathology , Forehead/pathology , Cerebral Veins/abnormalities , Cerebral Veins/diagnostic imagingABSTRACT
Zinc and imidazole salts were applied for the detection of nucleic acids on either polyacrylamide of agarose gels. After electrophoresis, polyacrylamide gels are washed in distilled water to remove most of the residual electrophoresis reagents, then incubated in 10 mM zinc sulfate for 10 min, and subsequently immersed in 0.2 M imidazole for 3 min. As a result, zinc salts precipitate on the gel surface, except in the positions occupied by nucleic acids, which appear as transparent, colorless bands. Staining of nucleic acids on agarose gels can be performed by incubation in 40 mM zinc sulfate for 10 min, followed by immersion in 0.2 M imidazole for 5 min to form a deep white-stained background. On soaking in 2 M imidazole for 45 min, the imidazole-induced zinc precipitate is removed from the positions were nucleic acids are located resulting in a negative image of colorless and transparent nucleic acid bands against a white background. The sensitivity of this stain ranges from 5 to 7 ng/band for small (from 1 to 0.2 kbp) DNA, from 7.8 to 13 ng/band for different 22-base oligonucleotides, from 62 to 125 ng/band for large (from 20 to 2 kbp) DNA, and is 1 microgram/band for human peripheral-blood monocyte RNA. After chelation of zinc with EDTA, the nucleic acids can be quantitatively recovered from the gel. The principal advantage of this technique over ethidium bromide staining is evident for preparative purposes. Using zinc-imidazole in the detection of purified pBACIB.1 (2.8 kbp) plasmid DNA and anti-HBsAg single chain Fv antibody fragment (0.7 kbp) DNA, followed by elution from gel slices, ligation and transformation of competent E. coli XL-1 Blue cells, the number of transformants notably increased from 280 (obtained with conventional ethidium bromide staining plus UV-irradiation at 312 nm) to 10,000.
Subject(s)
Electrophoresis, Agar Gel , Electrophoresis, Polyacrylamide Gel , Imidazoles , Nucleic Acids/isolation & purification , Staining and Labeling , Zinc Sulfate , Antibodies, Viral/genetics , Chemical Precipitation , DNA/isolation & purification , DNA/metabolism , DNA Restriction Enzymes/metabolism , Edetic Acid , Ethidium , Hepatitis B Surface Antigens/immunology , Humans , Molecular Weight , Plasmids , Static Electricity , Zinc/metabolismABSTRACT
We developed a technique that allows rapid protein elution from polyacrylamide gel bands at room temperature into a detergent-free buffer (elution time 2 x 10 min, total working time about 30 min) with high yields (90-98%) even at a low picomole level (1 picomole per band). Its efficacy relies on the combination of protein detection by reverse staining with the enhancement of protein diffusion after gel crushing. Detection is accomplished by gel incubation in an imidazole solution, followed by incubation in a zinc salt solution to develop a negative stain pattern. Proteins are eluted by zinc complexation in Laemmli electrophoresis buffer (Tris + glycine), from which sodium dodecyl sulfate is omitted to allow direct subsequent microanalysis, e.g. high performance liquid chromatography (HPLC) and automatic sequencing. A variety of proteins were eluted efficiently (with no apparent restriction due to their intrinsic properties) as quantified with radioiodinated total E. coli proteins. Yields were independent of acrylamide concentration, protein molecular mass (from 10 to 100 kDa) and the amount (from 1 to 100 picomole) of protein in the band. This protocol was derived from a quantitative evaluation of the effect of protein staining and of sample reduction prior to electrophoresis on elution yields. For N-terminal sequencing, the protein eluate was automatically loaded on a polyvinylidene difluoride (PVDF) membrane with conventional HPLC equipment; both loading and membrane clean-up were monitored at 206 nm. By simultaneously processing several analytical bands, the procedure allowed trace enrichment of a natural scarce protein that was N-terminal sequenced.