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1.
Mol Phylogenet Evol ; 157: 107066, 2021 04.
Article in English | MEDLINE | ID: mdl-33387645

ABSTRACT

The disjunct distribution between East Asia and North America is one of the best established biogeographic patterns. A robust phylogeny is fundamental for understanding the biogeographic histories of taxa with this distribution pattern. Tsuga (hemlock) is a genus of Pinaceae with a typical intercontinental disjunct distribution in East Asia and eastern and western North America, and its phylogeny has not been completely reconstructed in previous studies. In this study, we reconstructed a highly resolved phylogeny of Tsuga using 881 nuclear genes, 60 chloroplast genes and 23 mitochondrial genes and explored its biogeographic and reticulate evolutionary history. The results of phylogenetic analysis, molecular dating and ancestral area reconstruction indicate that Tsuga very likely originated from North America in the late Oligocene and dispersed from America to East Asia via the Bering Land Bridge during the middle Miocene. In particular, we found complex reticulate evolutionary pattern among the East Asian hemlock species. T. sieboldii possibly originated from hybridization with the ancestor of T. chinensis from mainland China and T. forrestii as the paternal donor and the ancestor of T. diversifolia and T. ulleungensis as the maternal donor. T. chinensis (Taiwan) could have originated by hybridization together with T. sieboldii and then evolved independently after dispersal to the Taiwan Island, subsequently experiencing mitochondrial DNA introgression with T. chinensis from mainland China. Moreover, our study found that T. chinensis from western China is more closely related to T. forrestii than to T. chinensis from eastern China. The nonmonophyletic T. chinensis needs taxonomic reconsideration.


Subject(s)
Phylogeny , Phylogeography , Transcriptome/genetics , Tsuga/genetics , DNA, Chloroplast/genetics , DNA, Mitochondrial/genetics , Asia, Eastern , Genes, Mitochondrial , Hybridization, Genetic , North America , Time Factors , Tsuga/anatomy & histology , United States
2.
Mol Phylogenet Evol ; 141: 106610, 2019 12.
Article in English | MEDLINE | ID: mdl-31499190

ABSTRACT

A robust phylogeny is prerequisite to understand the evolution and biogeography of organisms. However, ancient and recent evolutionary radiations occurred in many plant lineages, which pose great challenges for phylogenetic analysis, especially for conifers characterized by large effective population sizes and long generation times. Picea is an important component of the dark coniferous forests in the Northern Hemisphere. Previous studies improved our understanding of its evolutionary history, but its interspecific relationships and biogeographic history remain largely unresolved. In the present study, we reconstructed a well-resolved phylogeny of Picea by comparative transcriptomic analysis based on a complete species sampling. The phylogenetic analysis, together with molecular dating and ancestral area reconstruction, further supports the North American origin hypothesis for Picea, and indicates that this genus experienced multiple out-of-North America dispersals by the Bering Land Bridge. We also found that spruces in the Japanese Archipelago have multiple origins, and P. morrisonicola from the Taiwan Island has a close relationship with species from the Qinghai-Tibetan Plateau and adjacent regions. Our study provides the first complete phylogeny of Picea at the genomic level, which is important for future studies of this genus.


Subject(s)
Phylogeny , Picea/classification , Picea/genetics , Seed Dispersal/genetics , Transcriptome/genetics , Evolution, Molecular , Likelihood Functions , North America , Pinaceae , Species Specificity , Time Factors
3.
Ecotoxicol Environ Saf ; 106: 109-14, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24836885

ABSTRACT

Cadmium (Cd), a potent hepatotoxin, has been reported to induce endoplasmic reticulum (ER) stress in various cell types. However, whether such effect exists in bird is still unclear. To delineate the effects of Cd exposure on ER stress response, we examined the expression of 78-kDa glucose-regulated protein (GRP78) and alteration in calcium homeostasis in primary chicken hepatocytes treated with 2-22 µM Cd for 24 h. A significant decrease of cell viability was observed in chicken hepatocytes following Cd administration. In cells treated with Cd, GRP78 protein levels increased in a dose-dependent manner. In addition, GRP78 and GRP94mRNA levels were elevated in response to Cd exposure. The increase of the intracellular Ca(2+) concentration in chicken hepatocytes was found during Cd exposure. Cd significantly decreased the CaM mRNA levels in hepatocytes. These results show that Cd regulates the expression of GRP78 and calcium homeostasis in chicken hepatocytes, suggesting that ER stress induced by Cd plays an important role in the mechanisms of Cd cytotoxicity to the bird hepatocytes.


Subject(s)
Cadmium/toxicity , Endoplasmic Reticulum Stress/drug effects , Environmental Pollutants/toxicity , Hepatocytes/drug effects , Animals , Cadmium/analysis , Cadmium/metabolism , Calcium/metabolism , Cell Survival/drug effects , Chickens/genetics , Chickens/metabolism , Endoplasmic Reticulum Chaperone BiP , Environmental Pollutants/analysis , Environmental Pollutants/metabolism , Gene Expression Regulation/drug effects , HSP70 Heat-Shock Proteins/metabolism , Heat-Shock Proteins/metabolism , Hepatocytes/chemistry , Hepatocytes/metabolism , Homeostasis/drug effects , Homeostasis/physiology , Membrane Proteins/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism
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