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1.
Physiol Plant ; 148(3): 397-407, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23088645

ABSTRACT

Previously, we have characterized two tonoplast intrinsic proteins (TIPs) and four plasma membrane intrinsic proteins (PIPs) from the 2-day-old petals of tulip (Tulipa gesneriana). In this study, we analyzed the development of tulip petals and stems, temperature-dependent petal movement, the amount of ³H2O transported into petals and stems during petal movement, and the transcript levels of two TIP (TgTIP1;1 and TgTIP1;2) and four TgPIP genes in petals and stems, from the first day of petal opening to day 12. The development of the petals and stems was completed by days 6 and 9, respectively, after the first day of petal opening. Temperature-dependent petal movement and the amount of ³H2O that was transported into petals could be detected at significant levels up to day 6 with petal movement reaching a peak at day 3. Real-time reverse transcription-polymerase chain reaction analysis revealed that TgTIP1;1 and TgTIP1;2 were expressed ubiquitously in petals, stems, leaves, bulbs and roots. However, the expression level of TgTIP1;2 was very low in bulbs. The expression of both TgTIP1 genes was upregulated in close association with the development of petals but not with that of the stem. The four TgPIP genes were expressed at almost the same level during the development of the petals and the stem. However, the levels of the TgTIP1 and TgPIP transcripts in petals decreased during the course of petal wilting from day 9 onwards. These results suggest that TgTIP1;1 and TgTIP1;2 may contribute to petal development.


Subject(s)
Aquaporins/genetics , Flowers/growth & development , Flowers/genetics , Gene Expression Regulation, Plant , Sequence Homology, Amino Acid , Tulipa/growth & development , Tulipa/genetics , Aquaporins/metabolism , Biological Transport , Gene Expression Profiling , Gene Expression Regulation, Developmental , Organ Specificity/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Real-Time Polymerase Chain Reaction , Temperature , Water/metabolism
2.
Biochim Biophys Acta ; 1818(1): 1-11, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21963407

ABSTRACT

Aquaporins are integral membrane proteins that facilitate the transport of water and some small solutes across cellular membranes. X-ray crystallography of aquaporins indicates that four amino acids constitute an aromatic/arginine (ar/R) pore constriction known as the selectivity filter. On the basis of these four amino acids, tonoplast aquaporins called tonoplast intrinsic proteins (TIPs) are divided into three groups in Arabidopsis. Herein, we describe the characterization of two group I TIP1s (TgTIP1;1 and TgTIP1;2) from tulip (Tulipa gesneriana). TgTIP1;1 and TgTIP1;2 have a novel isoleucine in loop E (LE2 position) of the ar/R filter; the residue at LE2 is a valine in all group I TIPs from model plants. The homologs showed mercury-sensitive water channel activity in a fast kinetics swelling assay upon heterologous expression in Pichia pastoris. Heterologous expression of both homologs promoted the growth of P. pastoris on ammonium or urea as sole sources of nitrogen and decreased growth and survival in the presence of H(2)O(2). TgTIP1;1- and TgTIP1;2-mediated H(2)O(2) conductance was demonstrated further by a fluorescence assay. Substitutions in the ar/R selectivity filter of TgTIP1;1 showed that mutants that mimicked the ar/R constriction of group I TIPs could conduct the same substrates that were transported by wild-type TgTIP1;1. In contrast, mutants that mimicked group II TIPs showed no evidence of urea or H(2)O(2) conductance. These results suggest that the amino acid residue at LE2 position is critical for the transport selectivity of the TIP homologs and group I TIPs might have a broader spectrum of substrate selectivity than group II TIPs.


Subject(s)
Amino Acids/metabolism , Aquaporins/metabolism , Plant Proteins/metabolism , Tulipa/metabolism , Amino Acid Sequence , Amino Acid Substitution , Amino Acids/genetics , Aquaporins/chemistry , Aquaporins/genetics , Arabidopsis/genetics , Arabidopsis/metabolism , Biological Transport , Cloning, Molecular , Crystallography, X-Ray , Kinetics , Models, Molecular , Molecular Sequence Data , Phylogeny , Pichia , Plant Proteins/chemistry , Plant Proteins/genetics , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Transduction, Genetic , Tulipa/genetics , Water/metabolism , Zea mays/genetics , Zea mays/metabolism
3.
BMB Rep ; 44(11): 719-24, 2011 Nov.
Article in English | MEDLINE | ID: mdl-22118537

ABSTRACT

The Sec61α subunit is the core subunit of the protein conducting channel which is required for protein translocation in eukaryotes and prokaryotes. In this study, we cloned a Sec61α subunit from Penicillium ochrochloron (PoSec61α). Sequence and 3D structural model analysis showed that PoSec61α conserved the typical characteristics of eukaryotic and prokaryotic Sec61α subunit homologues. The pore ring known as the constriction point of the channel is formed by seven hydrophobic amino acids. Two methionine residues from transmembrane α-helice 7 (TM7) contribute to the pore ring formation and projected notably to the pore area and narrowed the pore compared with the superposed residues at the corresponding positions in the crystal structures or the 3D models of the Sec61α subunit homologues in archaea or other eukaryotes, respectively. Results reported herein indicate that the pore ring residues differ among Sec61α subunit homologues and two hydrophobic residues in the TM7 contribute to the pore ring formation.


Subject(s)
Membrane Proteins/chemistry , Membrane Proteins/genetics , Models, Molecular , Penicillium/genetics , Protein Subunits/chemistry , Protein Subunits/genetics , Sequence Analysis, Protein , Amino Acid Sequence , Cloning, Molecular , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Genes, Fungal/genetics , Membrane Proteins/metabolism , Molecular Sequence Data , Phylogeny , Protein Subunits/metabolism , Protein Transport , SEC Translocation Channels , Sequence Alignment , Sequence Homology, Amino Acid , Structural Homology, Protein
4.
Biosci Biotechnol Biochem ; 75(9): 1783-8, 2011.
Article in English | MEDLINE | ID: mdl-21897033

ABSTRACT

Arabidopsis thaliana contains two GDP-L-galactose phosphorylase genes, VTC2 and VTC5, which are critical for ascorbate (AsA) biosynthesis. We investigated the expression levels of both VTC2 and VTC5 genes in wild-type A. thaliana and the AsA deficient mutants during early seedling growth. Ascorbate accumulated to an equal extent in all genotypes up to 5 d post-germination (DPG). The transcript level of VTC2 was dominant, and increased in parallel with AsA accumulation in the wild type. On the other hand, the expression of VTC5 compensated for the reduced VTC2 transcription levels in the AsA deficient mutant vtc2-1 in young seedlings. A luciferase activity assay indicated that the VTC5 promoter was more active in young (2 DPG) cotyledons and that the VTC2 and VTC5 promoters drove a day-to-night variation in expression. The present work provides clues to the precise roles of VTC2 and VTC5 in AsA biosynthesis in A. thaliana at the young seedling stage.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Ascorbic Acid/biosynthesis , Gene Expression Regulation, Plant , Isoenzymes/metabolism , Phosphorylases/metabolism , Plants, Genetically Modified/enzymology , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Ascorbic Acid/genetics , Cotyledon/enzymology , Cotyledon/genetics , Galactose/metabolism , Genes, Reporter , Germination , Guanosine Diphosphate/metabolism , Isoenzymes/genetics , Light , Luciferases/analysis , Mutation , Phosphorylases/genetics , Plants, Genetically Modified/genetics , Promoter Regions, Genetic , RNA, Messenger/analysis , RNA, Messenger/biosynthesis , Seedlings/enzymology , Seedlings/genetics , Time Factors , Transformation, Genetic
5.
Biosci Biotechnol Biochem ; 75(8): 1524-32, 2011.
Article in English | MEDLINE | ID: mdl-21821928

ABSTRACT

We report the molecular characterization and physiological function of a novel L-aspartate dehydrogenase (AspDH). The purified enzyme was a 28-kDa dimeric protein, exhibiting high catalytic activity for L-aspartate (L-Asp) oxidation using NAD and/or NADP as cofactors. Quantitative real-time PCR analysis indicated that the genes involved in the AspDH gene cluster, poly-3-hydroxyalkanoate (PHA) biosynthesis, and the TCA cycle were substantially induced by L-Asp in wild-type cells. In contrast, expression of the aspartase and aspartate aminotransferase genes was substantially induced in the AspDH gene knockout mutant (ΔB3576) but not in the wild type. GC-MS analyses revealed that the wild-type strain synthesized poly-3-hydroxybutyrate from fructose or L-Asp, whereas the ΔB3576 mutant did not synthesize PHA from L-Asp. AspDH gene cluster products might be involved in the biosynthesis of the PHA precursor, revealing that AspDH was a non-NadB type enzyme, and thus entirely different from the previously reported NadB type enzymes working in NAD biosynthesis.


Subject(s)
Amino Acid Oxidoreductases/metabolism , Aspartic Acid/metabolism , Bacterial Proteins/metabolism , Cupriavidus necator/enzymology , NADP/metabolism , NAD/metabolism , Recombinant Proteins/metabolism , Amino Acid Oxidoreductases/genetics , Amino Acid Oxidoreductases/isolation & purification , Aspartate Aminotransferases/genetics , Aspartate Aminotransferases/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Cloning, Molecular , Cupriavidus necator/genetics , Dimerization , Escherichia coli , Gene Deletion , Gene Expression , Hydroxybutyrates/metabolism , Kinetics , Mass Spectrometry , Polyesters/metabolism , Real-Time Polymerase Chain Reaction , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Transformation, Bacterial
6.
Appl Microbiol Biotechnol ; 90(6): 1953-62, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21468714

ABSTRACT

L-aspartate dehydrogenase (EC 1.4.1.21; L: -AspDH) is a rare member of amino acid dehydrogenase superfamily and so far, two thermophilic enzymes have been reported. In our study, an ORF PA3505 encoding for a putative L-AspDH in the mesophilic bacterium Pseudomonas aeruginosa PAO1 was identified, cloned, and overexpressed in Escherichia coli. The homogeneously purified enzyme (PaeAspDH) was a dimeric protein with a molecular mass of about 28 kDa exhibiting a very high specific activity for L-aspartate (L-Asp) and oxaloacetate (OAA) of 127 and 147 U mg(-1), respectively. The enzyme was capable of utilizing both nicotinamide adenine dinucleotide (NAD) and nicotinamide adenine dinucleotide phosphate (NADP) as coenzyme. PaeAspDH showed a T (m) value of 48°C for 20 min that was improved to approximately 60°C by the addition of 0.4 M NaCl or 30% glycerol. The apparent K (m) values for OAA, NADH, and ammonia were 2.12, 0.045, and 10.1 mM, respectively; comparable results were observed with NADPH. The L-Asp production system B consisting of PaeAspDH, Bacillus subtilis malate dehydrogenase and E. coli fumarase, achieved a high level of L-Asp production (625 mM) from fumarate in fed-batch process with a molar conversion yield of 89.4%. Furthermore, the fermentative production system C released 33 mM of L-Asp after 50 h by using succinate as carbon source. This study represented an extensive characterization of the mesophilic AspDH and its potential applicability for efficient and attractive production of L-Asp. Our novel production systems are also hopeful for developing the new processes for other compounds production.


Subject(s)
Amino Acid Oxidoreductases/genetics , Amino Acid Oxidoreductases/metabolism , Aspartic Acid/metabolism , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/genetics , Amino Acid Oxidoreductases/chemistry , Amino Acid Oxidoreductases/isolation & purification , Cloning, Molecular , Coenzymes/metabolism , Enzyme Stability , Escherichia coli/genetics , Kinetics , Molecular Weight , NAD/metabolism , NADP/metabolism , Oxaloacetic Acid/metabolism , Protein Multimerization , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Substrate Specificity , Temperature
7.
Plant Sci ; 180(2): 375-82, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21421383

ABSTRACT

The genome of the cyanobacterium Synechocystis sp. PCC 6803 (hereafter, Synechocystis) contains an aqpZ gene (slr2057) which encodes an aquaporin (SsAqpZ), a membrane channel protein that might play a role in osmotic water transport and therefore the growth of Synechocystis. Structural characterization of SsAqpZ by protein sequence analysis and homology modelling revealed that it was more similar to bacterial aquaporin Z than the glycerol facilitator. To understand the functional role of SsAqpZ, the aqpZ knockout (KO) and myc-tagged aqpZ knockin (KI) Synechocystis were constructed. Water channel activity assays showed that SsAqpZ facilitated water transportation. SsAqpZ-mediated changes in cell volume were observed in wild-type (WT) and KI Synechocystis. Expression of SsAqpZ in KI Synechocystis was induced by extracellular hyperosmolarity. In the absence of hyperosmolarity, WT, KO and KI Synechocystis showed the same pattern of growth and no morphological or phenotypical perturbations. Under hyperosmotic condition, while the WT and also KI cells maintained a similar growth rate throughout the entire exponential phase, KO cells grew significantly slower. These results indicate that SsAqpZ has water channel activity and is involved in the adaptation and maintenance of growth of Synechocystis in a hyperosmotic environment.


Subject(s)
Aquaporins/metabolism , Gene Expression Regulation, Bacterial , Synechocystis/genetics , Synechocystis/physiology , Water/metabolism , Amino Acid Sequence , Aquaporins/chemistry , Aquaporins/genetics , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biological Transport , Cell Membrane/metabolism , Gene Knock-In Techniques , Gene Knockout Techniques , Membrane Proteins/chemistry , Membrane Proteins/genetics , Membrane Proteins/metabolism , Models, Molecular , Molecular Sequence Data , Mutation , Osmotic Pressure , Phylogeny , Synechocystis/chemistry , Synechocystis/metabolism
8.
J Exp Bot ; 62(10): 3647-57, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21421703

ABSTRACT

Ascorbate (AsA) is a redox buffer and enzyme cofactor with various proposed functions in stress responses and growth. The aim was to identify genes whose transcript levels respond to changes in leaf AsA. The AsA-deficient Arabidopsis mutant vtc2-1 was incubated with the AsA precursor L-galactono-1,4-lactone (L-GalL) to increase leaf AsA concentration. Differentially expressed genes screened by DNA microarray were further characterized for AsA responsiveness in wild-type plants. The analysis of 14 candidates by real-time PCR identified an aspartyl protease gene (ASP, At1g66180) and a C3HC4-type RING zinc finger gene (AtATL15, At1g22500) whose transcripts were rapidly responsive to increases in AsA pool size caused by L-GalL and AsA supplementation and light. Transgenic Arabidopsis plants expressing an AtATL15 promoter::luciferase reporter confirmed that the promoter is L-GalL, AsA, and light responsive. The expression patterns of ASP and AtATL15 suggest they have roles in growth regulation. The promoter of AtATL15 is responsive to AsA status and will provide a tool to investigate the functions of AsA in plants further.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/drug effects , Arabidopsis/metabolism , Ascorbic Acid/pharmacology , Aspartic Acid Proteases/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Aspartic Acid Proteases/genetics , Oligonucleotide Array Sequence Analysis , Plants, Genetically Modified/drug effects , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Polymerase Chain Reaction , Sugar Acids/metabolism
9.
Appl Microbiol Biotechnol ; 87(5): 1727-36, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20422179

ABSTRACT

Previous reports have shown that a unique bacterial dye-decolorizing peroxidase from the cyanobacterium Anabaena sp. strain PCC7120 (AnaPX) efficiently oxidizes both recalcitrant anthraquinone dyes (AQ) and typical aromatic peroxidase substrates. In this study, site-directed mutagenesis to replace five Met residues in AnaPX with high redox residues Ile, Leu, or Phe was performed for the improvement of the enzyme stability toward H(2)O(2). The heme cavity mutants M401L, M401I, M401F, and M451I had significantly increased H(2)O(2) stabilities of 2.4-, 3.7-, 8.2-, and 5.2-fold, respectively. Surprisingly, the M401F and M451I retained 16% and 5% activity at 100 mM H(2)O(2), respectively, in addition to maintaining high dye-decolorization activity toward AQ and azo dyes at 5 mM H(2)O(2) and showing a slower rate of heme degradation than the wildtype enzyme. The observed stabilization of AnaPX may be attributed to the replacement of potentially oxidizable Met residues either increasing the local stability of the heme pocket or limiting of the self-inactivation electron transfer pathways due to the above mutations. The increased stability of AnaPX variants coupled with the broad substrate specificity can be potentially useful for the further practical application of these enzymes especially in bioremediation of wastewater contaminated with recalcitrant AQ.


Subject(s)
Amino Acid Substitution/genetics , Anabaena/enzymology , Hydrogen Peroxide/metabolism , Methionine/genetics , Mutagenesis, Site-Directed , Mutant Proteins/metabolism , Peroxidase/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Enzyme Stability , Models, Molecular , Mutant Proteins/chemistry , Mutant Proteins/genetics , Peroxidase/chemistry , Peroxidase/genetics , Protein Stability , Protein Structure, Tertiary , Substrate Specificity
10.
Biochem J ; 426(2): 125-34, 2010 Feb 09.
Article in English | MEDLINE | ID: mdl-20015051

ABSTRACT

Euglena gracilis lacks a catalase and contains a single APX (ascorbate peroxidase) and enzymes related to the redox cycle of ascorbate in the cytosol. In the present study, a full-length cDNA clone encoding the Euglena APX was isolated and found to contain an open reading frame encoding a protein of 649 amino acids with a calculated molecular mass of 70.5 kDa. Interestingly, the enzyme consisted of two entirely homologous catalytic domains, designated APX-N and APX-C, and an 102 amino acid extension in the N-terminal region, which had a typical class II signal proposed for plastid targeting in Euglena. A computer-assisted analysis indicated a novel protein structure with an intramolecular dimeric structure. The analysis of cell fractionation showed that the APX protein is distributed in the cytosol, but not the plastids, suggesting that Euglena APX becomes mature in the cytosol after processing of the precursor. The kinetics of the recombinant mature FL (full-length)-APX and the APX-N and APX-C domains with ascorbate and H2O2 were almost the same as that of the native enzyme. However, the substrate specificity of the mature FL-APX and the native enzyme was different from that of APX-N and APX-C. The mature FL-APX, but not the truncated forms, could reduce alkyl hydroperoxides, suggesting that the dimeric structure is correlated with substrate recognition. In Euglena cells transfected with double-stranded RNA, the silencing of APX expression resulted in a significant increase in the cellular level of H2O2, indicating the physiological importance of APX to the metabolism of H2O2.


Subject(s)
Euglena gracilis/enzymology , Peroxidases/chemistry , Protozoan Proteins/chemistry , Amino Acid Sequence , Ascorbate Peroxidases , Cytosol/enzymology , Dimerization , Euglena gracilis/chemistry , Euglena gracilis/classification , Euglena gracilis/genetics , Hydrogen Peroxide/metabolism , Kinetics , Molecular Conformation , Molecular Sequence Data , Molecular Weight , Peroxidases/genetics , Peroxidases/metabolism , Phylogeny , Protein Structure, Tertiary , Protein Transport , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Sequence Alignment , Substrate Specificity
11.
Appl Environ Microbiol ; 75(23): 7509-18, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19801472

ABSTRACT

The open reading frame alr1585 of Anabaena sp. strain PCC 7120 encodes a heme-dependent peroxidase (Anabaena peroxidase [AnaPX]) belonging to the novel DyP-type peroxidase family (EC 1.11.1.X). We cloned and heterologously expressed the active form of the enzyme in Escherichia coli. The purified enzyme was a 53-kDa tetrameric protein with a pI of 3.68, a low pH optima (pH 4.0), and an optimum reaction temperature of 35 degrees C. Biochemical characterization revealed an iron protoporphyrin-containing heme peroxidase with a broad specificity for aromatic substrates such as guaiacol, 4-aminoantipyrine and pyrogallol. The enzyme efficiently catalyzed the decolorization of anthraquinone dyes like Reactive Blue 5, Reactive Blue 4, Reactive Blue 114, Reactive Blue 119, and Acid Blue 45 with decolorization rates of 262, 167, 491, 401, and 256 muM.min(-1), respectively. The apparent K(m) and k(cat)/K(m) values for Reactive Blue 5 were 3.6 muM and 1.2 x 10(7) M(-1) s(-1), respectively, while the apparent K(m) and k(cat)/K(m) values for H(2)O(2) were 5.8 muM and 6.6 x 10(6) M(-1) s(-1), respectively. In contrast, the decolorization activity of AnaPX toward azo dyes was relatively low but was significantly enhanced 2- to approximately 50-fold in the presence of the natural redox mediator syringaldehyde. The specificity and catalytic efficiency for hydrogen donors and synthetic dyes show the potential application of AnaPX as a useful alternative of horseradish peroxidase or fungal DyPs. To our knowledge, this study represents the only extensive report in which a bacterial DyP has been tested in the biotransformation of synthetic dyes.


Subject(s)
Anabaena/enzymology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Peroxidase/genetics , Peroxidase/metabolism , Amino Acid Sequence , Anthraquinones/metabolism , Bacterial Proteins/chemistry , Cloning, Molecular , Coenzymes/analysis , Enzyme Stability , Escherichia coli/genetics , Gene Expression , Heme/analysis , Hydrogen Peroxide/metabolism , Hydrogen-Ion Concentration , Isoelectric Point , Kinetics , Molecular Sequence Data , Molecular Weight , Peroxidase/chemistry , Phylogeny , Sequence Alignment , Substrate Specificity , Temperature
12.
Appl Environ Microbiol ; 75(9): 2792-7, 2009 May.
Article in English | MEDLINE | ID: mdl-19251885

ABSTRACT

Water channels formed by aquaporins (AQPs) play an important role in the control of water homeostasis in individual cells and in multicellular organisms. Plasma membrane intrinsic proteins (PIPs) constitute a subclass of plant AQPs. TgPIP2;1 and TgPIP2;2 from tulip petals are members of the PIP family. In this study, we overexpressed TgPIP2;1 and TgPIP2;2 in Pichia pastoris and monitored their water channel activity (WCA) either by an in vivo spheroplast-bursting assay performed after hypo-osmotic shock or by growth assay. Osmolarity, pH, and inhibitors of AQPs, protein kinases (PKs), and protein phosphatases (PPs) affect the WCA of heterologous AQPs in this expression system. The WCA of TgPIP2;2-expressing spheroplasts was affected by inhibitors of PKs and PPs, which indicates that the water channel of this homologue is regulated by phosphorylation in P. pastoris. From the results reported herein, we suggest that P. pastoris can be employed as a heterologous expression system to assay the WCA of PIPs and to monitor the AQP-mediated channel gating mechanism, and it can be developed to screen inhibitors/effectors of PIPs.


Subject(s)
Aquaporins/metabolism , Pichia/genetics , Plant Proteins/metabolism , Tulipa/genetics , Aquaporins/antagonists & inhibitors , Aquaporins/genetics , Gene Expression , Hydrogen-Ion Concentration , Osmotic Pressure , Phosphoprotein Phosphatases/antagonists & inhibitors , Phosphoprotein Phosphatases/metabolism , Plant Proteins/antagonists & inhibitors , Plant Proteins/genetics , Protein Kinase Inhibitors/pharmacology , Protein Kinases/metabolism , Recombinant Proteins/antagonists & inhibitors , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Spheroplasts/genetics
13.
J Biol Chem ; 283(45): 31133-41, 2008 Nov 07.
Article in English | MEDLINE | ID: mdl-18782759

ABSTRACT

We have previously proposed that Euglena gracilis possesses a pathway for the production of ascorbate (AsA) through d-galacturonate/L-galactonate as representative intermediates ( Shigeoka, S., Nakano, Y., and Kitaoka, S. (1979) J. Nutr. Sci. Vitaminol. 25, 299-307 ). However, genetic evidence proving that the pathway exists has not been obtained yet. We report here the identification of a gene encoding aldonolactonase, which catalyzes a penultimate step of the biosynthesis of AsA in Euglena. By a BLAST search, we identified one candidate for the enzyme having significant sequence identity with rat gluconolactonase, a key enzyme for the production of AsA via d-glucuronate in animals. The purified recombinant aldonolactonase expressed in Escherichia coli catalyzed the reversible reaction of L-galactonate and L-galactono-1,4-lactone with zinc ion as a cofactor. The apparent K(m) values for L-galactonate and L-galactono-1,4-lactone were 1.55 +/- 0.3 and 1.67 +/- 0.39 mm, respectively. The cell growth of Euglena was arrested by silencing the expression of aldonolactonase through RNA interference and then restored to the normal state by supplementation with L-galactono-1,4-lactone. Euglena cells accumulated more AsA on supplementation with d-galacturonate than d-glucuronate. The present results indicate that aldonolactonase is significant for the biosynthesis of AsA in Euglena cells, which predominantly utilize the pathwayviad-galacturonate/L-galactonate. The identification of aldonolactonase provides the first insight into the biosynthesis of AsA via uronic acids as the intermediate in photosynthetic algae including Euglena.


Subject(s)
Algal Proteins/metabolism , Ascorbic Acid/biosynthesis , Carboxylic Ester Hydrolases/metabolism , Euglena gracilis/enzymology , Hexuronic Acids/metabolism , Protozoan Proteins/metabolism , Sugar Acids/metabolism , Algal Proteins/genetics , Amino Acid Sequence , Animals , Ascorbic Acid/genetics , Carboxylic Ester Hydrolases/genetics , Escherichia coli/enzymology , Escherichia coli/genetics , Euglena gracilis/genetics , Molecular Sequence Data , Protozoan Proteins/genetics , Rats , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
14.
Plant Cell Physiol ; 49(8): 1196-208, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18567892

ABSTRACT

We suggested previously that temperature-dependent tulip (Tulipa gesneriana) petal movement that is concomitant with water transport is regulated by reversible phosphorylation of an unidentified plasma membrane intrinsic protein (PIP). In this study, four full-length cDNAs of PIPs from tulip petals were identified and cloned. Two PIPs, namely TgPIP1;1 and TgPIP1;2, are members of the PIP1 subfamily, and the remaining two PIPs, namely TgPIP2;1 and TgPIP2;2, belong to the PIP2 subfamily of aquaporins and were named according to the nomenclature of PIP genes in plants. Of these four homologs, only TgPIP2;2 displayed significant water channel activity in the heterologous expression assay using Xenopus laevis oocytes. The water channel activity of this functional isoform was abolished by mercury and was affected by inhibitors of protein kinase and protein phosphatase. Using a site-directed mutagenesis approach to substitute several serine residues with alanine, and assessing water channel activity using the methylotrophic yeast Pichia pastoris expression assay, we showed that Ser35, Ser116 and Ser274 are the putative phosphorylation sites of TgPIP2;2. Real-time reverse transcription-PCR analysis revealed that the transcript levels of TgPIP1;1 and TgPIP1;2 in tulip petals, stems, leaves, bulbs and roots are very low when compared with those of TgPIP2;1 and TgPIP2;2. The transcript level of TgPIP2;1 is negligible in roots, and TgPIP2;2 is ubiquitously expressed in all organs with significant transcript levels. From the data reported herein, we suggest that TgPIP2;2 might be modulated by phosphorylation and dephosphorylation for regulating water channel activity, and may play a role in transcellular water transport in all tulip organs.


Subject(s)
Aquaporins/metabolism , Cell Membrane/metabolism , Flowers/metabolism , Plant Proteins/metabolism , Tulipa/metabolism , Amino Acid Sequence , Gene Expression Regulation, Plant/physiology , Models, Molecular , Molecular Sequence Data , Phosphorylation , Phylogeny , Plant Proteins/genetics , Protein Conformation , Water/metabolism
15.
J Biochem Mol Biol ; 39(6): 671-6, 2006 Nov 30.
Article in English | MEDLINE | ID: mdl-17129401

ABSTRACT

The holoenzyme of protein phosphatase (PP) from tulip petals was purified by using hydrophobic interaction, anion exchange and microcystin affinity chromatography to analyze activity towards p-nitrophenyl phosphate (p-NPP). The catalytic subunit of PP was released from its endogenous regulatory subunits by ethanol precipitation and further purified. Both preparations were characterized by immunological and biochemical approaches to be PP2A. On SDS-PAGE, the final purified holoenzyme preparation showed three protein bands estimated at 38, 65, and 75 kDa while the free catalytic subunit preparation showed only the 38 kDa protein. In both preparations, the 38 kDa protein was identified immunologically as the catalytic subunit of PP2A by using a monoclonal antibody against the PP2A catalytic subunit. The final 623- and 748- fold purified holoenzyme and the free catalytic preparations, respectively, exhibited high sensitivity to inhibition by 1 nM okadaic acid when activity was measured with p-NPP. The holoenzyme displayed higher stimulation in the presence of ammonium sulfate than the free catalytic subunit did by protamine, thereby suggesting different enzymatic behaviors.


Subject(s)
Flowers/enzymology , Holoenzymes/metabolism , Phosphoprotein Phosphatases/isolation & purification , Tulipa/enzymology , Catalytic Domain , Okadaic Acid/metabolism , Phosphoprotein Phosphatases/chemistry , Protein Phosphatase 2
16.
Biosci Biotechnol Biochem ; 70(11): 2720-6, 2006 Nov.
Article in English | MEDLINE | ID: mdl-17090924

ABSTRACT

D-Galacturonic acid reductase, a key enzyme in ascorbate biosynthesis, was purified to homogeneity from Euglena gracilis. The enzyme was a monomer with a molecular mass of 38-39 kDa, as judged by SDS-PAGE and gel filtration. Apparently it utilized NADPH with a Km value of 62.5+/-4.5 microM and uronic acids, such as D-galacturonic acid (Km=3.79+/-0.5 mM) and D-glucuronic acid (Km=4.67+/-0.6 mM). It failed to catalyze the reverse reaction with L-galactonic acid and NADP(+). The optimal pH for the reduction of D-galacturonic acid was 7.2. The enzyme was activated 45.6% by 0.1 mM H(2)O(2), suggesting that enzyme activity is regulated by cellular redox status. No feedback regulation of the enzyme activity by L-galactono-1,4-lactone or ascorbate was observed. N-terminal amino acid sequence analysis revealed that the enzyme is closely related to the malate dehydrogenase families.


Subject(s)
Alcohol Oxidoreductases/metabolism , Ascorbic Acid/biosynthesis , Euglena gracilis/enzymology , Alcohol Oxidoreductases/chemistry , Alcohol Oxidoreductases/isolation & purification , Amino Acid Sequence , Animals , Catalysis , Hydrogen-Ion Concentration , Kinetics , Molecular Sequence Data , NAD (+) and NADP (+) Dependent Alcohol Oxidoreductases , Sequence Alignment , Substrate Specificity , Sugar Acids/metabolism
17.
Biosci Biotechnol Biochem ; 69(10): 1861-70, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16244435

ABSTRACT

The rocG gene encoding glutamate dehydrogenase from Bacillus subtilis (Bs-GluDH) was cloned, and expressed at considerable magnitude in Escherichia coli. The recombinant Bs-GluDH was purified to homogeneity and has been determined to have a hexameric structure (M(r) 270 kDa) with strict specificity for 2-oxoglutarate and L-glutamate, requiring NADH and NAD+ as cofactors respectively. The enzyme showed low thermostability with T(m) = 41 degrees C due to dissociation of the hexamer. To improve the thermostability of this enzyme, we performed error-prone PCR, introducing random mutagenesis on cloned GluDH. Two single mutant enzymes, Q144R and E27F, were isolated from the final mutant library. Their T(m) values were 61 degrees C and 49 degrees C respectively. Furthermore, Q144R had a remarkably high k(cat) value (435 s(-1)) for amination reaction at 37 degrees C, 1.3 times higher than that of the wild-type. Thus, Q144R can be used as a template gene to modify the substrate specificity of Bs-GluDH for industrial use.


Subject(s)
Bacillus subtilis/enzymology , Glutamate Dehydrogenase/genetics , Mutagenesis , Cloning, Molecular , Dimerization , Enzyme Stability , Glutamate Dehydrogenase/isolation & purification , Glutamate Dehydrogenase/metabolism , Glutamic Acid/metabolism , Hot Temperature , Ketoglutaric Acids/metabolism , Kinetics , Molecular Weight , Mutation, Missense , NAD , Substrate Specificity/genetics
18.
Biosci Biotechnol Biochem ; 69(9): 1802-5, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16195607

ABSTRACT

The Lys80, Gly82 and Met101 residues of glutamate dehydrogenase from Bacillus subtilis were mutated into a series of single mutants. The wild-type enzyme was highly specific for 2-oxoglutarate, whereas G82K and M101S dramatically switched to increased specificity for oxaloacetate with kcat values 3.45 and 5.68 s-1, which were 265-fold and 473-fold higher respectively than those for 2-oxoglutarate.


Subject(s)
Bacillus subtilis/enzymology , Glutamate Dehydrogenase/chemistry , Glutamate Dehydrogenase/genetics , Mutagenesis, Site-Directed , Bacillus subtilis/genetics , Binding Sites/physiology , Glutamate Dehydrogenase/physiology , Models, Molecular , Substrate Specificity/genetics
19.
Plant Cell Physiol ; 46(8): 1264-71, 2005 Aug.
Article in English | MEDLINE | ID: mdl-15919670

ABSTRACT

The active oxygen species (AOS) that arise from normal metabolic processes are kept under tight control by various antioxidant mechanisms. AOS are important signal molecules that regulate many physiological processes, including environmental stress responses. In this work, we have investigated the effect of lowered cytosolic ascorbate peroxidase (APX) activity in transgenic tobacco BY-2 cells, using two transformed BY-2 cell lines, cAPX-S2 and cAPX-S3, resulting from co-suppression by expression of Arabidopsis APX1 cDNA under the cauliflower mosaic virus (CaMV) 35S promoter. cAPX-S2 and cAPX-S3 possessed 50 and 75% lower cytosolic APX activity, respectively, compared with that in the untransformed cells. Chemical fluorescence analysis indicated that the AOS levels were markedly higher in the two APX-suppressed cell lines than in the wild-type cells. However, there were no substantial differences in the activity levels of the various other antioxidant enzymes. Interestingly, the APX-suppressed cells showed different responses and tolerances to environmental stresses, such as heat and salinity. Suppression subtractive hybridization revealed that several heat- and salt stress-inducible genes were up-regulated in cAPX-S3 cells. HSP70, DnaJ-like protein and purple acid phosphatase were among the constitutively induced genes. An in-gel kinase assay suggested that a mitogen-activated protein (MAP) kinase of approximately 46 kDa was predominantly active in the APX-suppressed cells, and transcript levels of both nicotiana protein kinase 1 (NPK1) and nucleoside diphosphate kinase 2 (NDPK2) were up-regulated. These data suggest the possibility that MAP kinase cascades are activated by subtle imbalances in the homeostasis of the cellular redox status caused by lowered cytosolic APX activity.


Subject(s)
Cytosol/enzymology , Nicotiana/enzymology , Peroxidases/antagonists & inhibitors , Ascorbate Peroxidases , Base Sequence , Cell Line , DNA Primers , Hot Temperature , Oxidation-Reduction , Peroxidases/metabolism , Salts , Nicotiana/cytology
20.
J Nutr ; 135(3): 549-55, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15735092

ABSTRACT

We investigated whether administration of docosahexaenoic acid (DHA), a major (n-3) fatty acid of the brain, ameliorates the impairment of learning ability in an animal model of Alzheimer's disease (AD), rats infused with amyloid-beta (Abeta) peptide (1-40) into the cerebral ventricle. Inbred 3rd generation male rats (20 wk old) fed a fish oil-deficient diet were randomly divided into 4 groups: a vehicle group, an Abeta peptide-infused group (Abeta group), a DHA group, and an Abeta + DHA group. A mini-osmotic pump filled with Abeta peptide or vehicle was implanted in the rats, and they were tested for learning ability-related reference and working memory in an 8-arm radial maze. The rats were then orally fed DHA dissolved in 5% gum Arabic solution at 300 mg/(kg . d) (DHA and Abeta + DHA groups) or vehicle alone (vehicle and Abeta groups) and tested again for learning ability. DHA administered for 12 wk significantly reduced the increase in the number of reference and working memory errors in the Abeta-infused rats, and increased both the cortico-hippocampal level of DHA and the molar ratio of DHA/arachidonic acid, suggesting an amelioration of the impaired spatial cognition learning ability. Furthermore, DHA suppressed the increases in the levels of lipid peroxide and reactive oxygen species in the cerebral cortex and the hippocampus of Abeta-infused rats, suggesting that DHA increases antioxidative defenses. DHA is thus a possible therapeutic agent for ameliorating learning deficiencies due to Alzheimer's disease.


Subject(s)
Amyloid beta-Peptides/toxicity , Cognition/drug effects , Docosahexaenoic Acids/pharmacology , Docosahexaenoic Acids/therapeutic use , Learning/drug effects , Space Perception/drug effects , Alzheimer Disease/drug therapy , Alzheimer Disease/psychology , Animals , Disease Models, Animal , Rats , Rats, Wistar , Reactive Oxygen Species
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