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1.
Int J Med Mushrooms ; 22(1): 45-54, 2020.
Article in English | MEDLINE | ID: mdl-32463997

ABSTRACT

The well-known and widely cultivated lingzhi has had a significant impact on Chinese culture and is now an important fungal crop providing medicinal benefits to human health and economic value to social development within China and around the world. The European mushroom name, Ganoderma lucidum, has been misapplied to this species for over 100 years until recently reidentified as G. sichuanense. Soon after this, a new species name, G. lingzhi, was also proposed for the fungus because of an unusual internal transcribed spacer (ITS) sequence purportedly of the holotype of G. sichuanense. This extraordinary ITS sequence, which apparently belongs to another species, created an inconsistency between morphological characteristics and molecular data of the holotype making it "demonstrably ambiguous"; this led to an epitypification to support the holotype for the precise application of the name, according to the International Code of Nomenclature for algae, fungi, and plants. However, arguments concerning the names G. sichuanense and G. lingzhi are still heating up, including attempts to reject the epitype of G. sichuanense. To clarify the confusion, the typification of G. sichuanense is reviewed here to demonstrate that the epitype of G. sichuanense was appropriately designated for the purpose to support the holotype of the name, the fact that both G. sichuanense and G. lingzhi are conspecific, and that the name G. lingzhi was based on the unwarranted ITS sequence claimed to be of the holotype of G. sichuanense. Suggestions are made for this case to make a way forward, especially re-examination of relevant fungarium collections to reach a consensus to stabilize the use of the name.


Subject(s)
Ganoderma/classification , Ganoderma/genetics , China , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Mycological Typing Techniques
2.
Biodivers Data J ; (5): e8049, 2017.
Article in English | MEDLINE | ID: mdl-28325971

ABSTRACT

BACKGROUND: The British and Irish checklist of Cynipoidea is revised, considerably updating the last complete checklist published in 1978. Disregarding uncertain identifications, 220 species are now known from Britain and Ireland, comprising 91 Cynipidae (including two established non-natives), 127 Figitidae and two Ibaliidae. NEW INFORMATION: One replacement name is proposed, Kleidotoma thomsoni Forshage, for the secondary homonym Kleidotoma tetratoma Thomson, 1861 (nec K. tetratoma (Hartig, 1841)).

3.
Mycologia ; 107(1): 104-22, 2015.
Article in English | MEDLINE | ID: mdl-25376798

ABSTRACT

This study explores species limits of a group of Clavaria species with taxonomic and nomenclatural problems and discusses the phylogeny and circumscription of the genus. The nuc 28S rDNA (28S) and internal transcribed spacer region phylogenies resolve species relationships, and the ITS is shown to be an adequate barcode marker for Clavaria. Yellow, clamped species of Clavaria are distributed in two clades, (i) C. flavostellifera, sister to C. incarnata and C. asterospora in ITS analyses, characterized by producing ornamented spores, and (ii) C. argillacea-C. citrinorubra-C. flavipes-C. sphagnicola, with smooth spores. Clavaria flavostellifera is described as new species based on morphological and molecular characters. Molecular evidence that supports C. sphagnicola as distinct from C. argillacea is provided. The usefulness of spore ornamentation as a taxonomic character is discussed; it is present only in some taxa and then only on spores trapped in the hymenium. Descriptions of C. argillacea, C. flavipes and C. sphagnicola are provided, along with color photographs and a key to yellow species of Clavaria with clamped basidia. Camarophyllopsis and Clavicorona are recovered within a paraphyletic Clavaria in our 28S phylogeny. Clampless contextual hyphae and narrow, slightly thick-walled mycelial hyphae are proposed as synapomorphies of Camarophyllopsis and Clavaria.


Subject(s)
Agaricales/classification , Phylogeny , Agaricales/genetics , Agaricales/growth & development , Agaricales/isolation & purification , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Molecular Sequence Data , Spores, Fungal/classification , Spores, Fungal/genetics , Spores, Fungal/isolation & purification
4.
Bot J Linn Soc ; 166(2): 185-211, 2011.
Article in English | MEDLINE | ID: mdl-21941694

ABSTRACT

This is an historical and descriptive account of 28 herbarium specimens, 27 lichens and an alga, found in the archives of Charles Chalcraft, a descendant of the Bedford family, who were dye manufacturers in Leeds, England, in the 19th century. The lichens comprise 13 different morphotypes collected in the Canary Islands and West Africa by the French botanist J. M. Despréaux between 1833 and 1839. The collections include samples of "Roccella fuciformis", "R. phycopsis" and "R. tinctoria" (including the fertile morphotype "R. canariensis"), "Ramalina crispatula" and "R. cupularis", two distinct morphotypes of "Sticta", "S. canariensis" and "S. dufouri", "Physconia enteroxantha", "Pseudevernia furfuracea var. ceratea" and "Pseudocyphellaria argyracea". The herbarium also includes authentic material of "Parmotrema tinctorum" and a probable syntype of "Seirophora scorigena". Most of these species are known as a source of the purple dye orchil, which was used to dye silk and wool.


Subject(s)
Botany , Clothing , Coloring Agents , Lichens , Manufactured Materials , Africa, Western/ethnology , Botany/education , Botany/history , Clothing/economics , Clothing/history , Coloring Agents/economics , Coloring Agents/history , History, 19th Century , Manufactured Materials/economics , Manufactured Materials/history , Plants, Medicinal , Spain/ethnology , United Kingdom/ethnology
5.
Mycologia ; 102(2): 455-8, 2010.
Article in English | MEDLINE | ID: mdl-20361512

ABSTRACT

Morchella anatolica (Ascomycota, Pezizales, Morchellaceae), a new species collected from pine forest of southwestern Anatolia, Turkey, is described and illustrated.


Subject(s)
Ascomycota/isolation & purification , Pinus , Plant Diseases/microbiology , Ascomycota/classification , Ascomycota/ultrastructure , Turkey
6.
New Phytol ; 160(1): 43-48, 2003 Oct.
Article in English | MEDLINE | ID: mdl-33873520

ABSTRACT

• Here, the reliability of published fungal nucleic acid sequences is tested by the critical re-evaluation of 206 named sequences obtained from public-access databases. • Sequences from the ribosomal RNA (rRNA) gene cluster were examined as these are commonly used to establish fungal phylogeny and evolution, and are also increasingly employed in the identification of fungi from nonculture based studies. • Fifty-one rRNA internal transcribed spacer (ITS) sequences were obtained for species of Amanita, 55 ITS sequences were obtained for species of Phoma and 100 rRNA small subunit sequences were obtained from representative genera of the order Helotiales. In each case, the fungal group was selected partly on the basis of sequences deposited by three or more laboratories in order to avoid sample bias. The results suggest that up to 20% of the sequences available for each group may be unreliable, and this proportion is supported by additional informal observations.

8.
Dev Growth Differ ; 36(6): 567-577, 1994 Dec.
Article in English | MEDLINE | ID: mdl-37281074

ABSTRACT

Members of the TGF-ß superfamily of polypeptides are key regulators in developmental processes. Several studies have shown that expression of TGF-ß mRNA and protein are developmentally regulated and that both are prominently expressed in tissues undergoing epithelial-mesenchymal interactions such as branching morphogenesis. It has been shown that TGF-ß1 protein is present in E 14 mouse submandibular glands at a time when branching is already establihsed. Here we demonstrate by RT-PCR and immunofluorescence that both TGF-ß1 mRNA and protein are present in E 13 submandibular and sublingual glands at a time when branching is being initiated. Addition of TGF-ß1 to E 13 rudiments resulted in reductions in organ size and inhibition of branching. Sensitivity to TGF-ß1 depended on the developmental stage of the rudiments (early or late E 13) and the dose of growth factor used. TGF-ß1 Also caused epithelial abnormalities, notably treated organs had elongated ducts. The effects were most pronounced in the sublingual gland. Taken together these results suggest a regulatory role for endogenous TGF-ß1 in the growth and morphogenesis of mouse salivary glands.

9.
Dev Growth Differ ; 35(6): 683-690, 1993 Dec.
Article in English | MEDLINE | ID: mdl-37282306

ABSTRACT

Embryonic mouse salivary glands, pancreata, and kidneys were isolated from embryos of appropriate gestational age by microdissection, and were cultured on Biopore membrane either non-coated or coated with type I collagen or Matrigel. As expected, use of Biopore membrane allowed high quality photomicroscopy of the living organs. In all organs extensive mesenchymal spreading was observed in the presence of type I collagen or Matrigel. However, differences were noted in the effects of extracellular matrix (ECM) coatings on epithelial growth and morphogenesis: salivary glands were minimally affected, pancreas morphogenesis was adversely affected, and kidney growth and branching apparently was enhanced. It is suggested that these differences in behaviour reflect differences in the strength of interactions between the mesenchymal cells and their surrounding endogenous matrix, compared to the exogenous ECM macromolecules. This method will be useful for culture of these and other embryonic organs. In particular, culture of kidney rudiments on ECM-coated Biopore offers a great improvement over previously used methods which do not allow morphogenesis to be followed in vitro.

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