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1.
J Clin Endocrinol Metab ; 98(8): 3298-305, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23750031

ABSTRACT

CONTEXT: Polycystic ovary syndrome (PCOS), the commonest cause of anovulatory infertility, is characterized by disordered follicle development including increased activation and accelerated growth of preantral follicles. Data from experimental animals and preliminary results from studies of human ovarian tissue suggest that IGFs affect preantral follicle development. OBJECTIVE: Our objectives were to investigate the expression of the type-1 IGF receptor (IGFR-1) in the human ovary and to determine whether IGFs are involved in stimulating the transition of follicles from primordial to primary stage in normal and polycystic ovaries. DESIGN: We used archived ovarian tissue for protein expression studies and small cortical biopsies for follicle isolation and for tissue culture. SETTING: This was a laboratory-based study, using clinical tissue samples. PATIENTS: A total of 54 women, 33 with normal ovaries and 21 with polycystic ovaries, were classified by reference to menstrual cycle history and ultrasonography. MAIN OUTCOME MEASURES: We evaluated expression of IGFR-1 mRNA in isolated preantral follicles and of IGFR-1 protein in archived ovarian tissue samples from normal and polycystic ovaries and effects of exogenous IGF-1 on preantral follicle development and survival in cultured fragments of normal and polycystic ovaries. RESULTS: IGFR-1 mRNA and protein was expressed in preantral follicles at all stages of development and enhanced expression was noted in PCOS follicles during early preantral development. IGF-1 stimulated initiation of follicle growth in normal tissue but had little effect on preantral follicle growth in polycystic ovaries in which, characteristically, there was a higher proportion of follicles that had entered the growing phase even before culture. CONCLUSIONS: IGFs are plausible candidates in regulation of initiation of human follicle growth, and accelerated preantral follicle growth in PCOS may be due to increased activity of endogenous IGFs.


Subject(s)
Ovarian Follicle/growth & development , Polycystic Ovary Syndrome/physiopathology , Somatomedins/physiology , Adult , Dose-Response Relationship, Drug , Female , Humans , Insulin-Like Growth Factor I/pharmacology , Middle Aged , Ovarian Follicle/drug effects , RNA, Messenger/analysis , Receptor, IGF Type 1/analysis , Receptor, IGF Type 1/genetics
2.
J Theor Biol ; 326: 11-20, 2013 Jun 07.
Article in English | MEDLINE | ID: mdl-23458440

ABSTRACT

Alkaline pH adaptation represents an important environmental stress response in Aspergillus nidulans. It is mediated by the pal signalling pathway and the PacC transcription factor. Although studied extensively experimentally, the activation mechanism of PacC has not been quantified, and it is not clear how this activation is regulated. Here, by constructing mathematical models, we first show that the pattern of PacC activation observed in previously published experiments cannot be explained based on existing knowledge about PacC activation. Extending the model with a negative feedback loop is necessary to produce simulation results that are consistent with the data, suggesting the existence of a negative feedback loop in the PacC activation process. This extended model is then validated against published measurements for cells with drug treatment and mutant cells. Furthermore, we investigate the role of an intermediate form of PacC in the PacC activation process, and propose experiments that can be used to test our predictions. Our work illustrates how mathematical models can be used to uncover regulatory mechanisms in the transcription regulation, and generate hypotheses that guide further laboratory investigations.


Subject(s)
Aspergillus nidulans/genetics , Feedback, Physiological/physiology , Fungal Proteins/agonists , Models, Biological , Transcription Factors/agonists , Transcriptional Activation , Computer Simulation , Gene Expression Regulation, Fungal , Hydrogen-Ion Concentration , Stress, Physiological/genetics , Stress, Physiological/physiology
3.
BMC Res Notes ; 5: 258, 2012 May 25.
Article in English | MEDLINE | ID: mdl-22631601

ABSTRACT

BACKGROUND: Saccharomyces cerevisiae senses hyperosmotic conditions via the HOG signaling network that activates the stress-activated protein kinase, Hog1, and modulates metabolic fluxes and gene expression to generate appropriate adaptive responses. The integral control mechanism by which Hog1 modulates glycerol production remains uncharacterized. An additional Hog1-independent mechanism retains intracellular glycerol for adaptation. Candida albicans also adapts to hyperosmolarity via a HOG signaling network. However, it remains unknown whether Hog1 exerts integral or proportional control over glycerol production in C. albicans. RESULTS: We combined modeling and experimental approaches to study osmotic stress responses in S. cerevisiae and C. albicans. We propose a simple ordinary differential equation (ODE) model that highlights the integral control that Hog1 exerts over glycerol biosynthesis in these species. If integral control arises from a separation of time scales (i.e. rapid HOG activation of glycerol production capacity which decays slowly under hyperosmotic conditions), then the model predicts that glycerol production rates elevate upon adaptation to a first stress and this makes the cell adapts faster to a second hyperosmotic stress. It appears as if the cell is able to remember the stress history that is longer than the timescale of signal transduction. This is termed the long-term stress memory. Our experimental data verify this. Like S. cerevisiae, C. albicans mimimizes glycerol efflux during adaptation to hyperosmolarity. Also, transient activation of intermediate kinases in the HOG pathway results in a short-term memory in the signaling pathway. This determines the amplitude of Hog1 phosphorylation under a periodic sequence of stress and non-stressed intervals. Our model suggests that the long-term memory also affects the way a cell responds to periodic stress conditions. Hence, during osmohomeostasis, short-term memory is dependent upon long-term memory. This is relevant in the context of fungal responses to dynamic and changing environments. CONCLUSIONS: Our experiments and modeling have provided an example of identifying integral control that arises from time-scale separation in different processes, which is an important functional module in various contexts.


Subject(s)
Candida albicans/enzymology , MAP Kinase Signaling System , Mitogen-Activated Protein Kinases/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Stress, Physiological , Systems Biology , Adaptation, Physiological , Enzyme Activation , Glycerol/metabolism , Models, Biological , Osmotic Pressure , Phosphorylation , Time Factors
4.
Med Mycol ; 50(7): 699-709, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22463109

ABSTRACT

Pathogenic microbes exist in dynamic niches and have evolved robust adaptive responses to promote survival in their hosts. The major fungal pathogens of humans, Candida albicans and Candida glabrata, are exposed to a range of environmental stresses in their hosts including osmotic, oxidative and nitrosative stresses. Significant efforts have been devoted to the characterization of the adaptive responses to each of these stresses. In the wild, cells are frequently exposed simultaneously to combinations of these stresses and yet the effects of such combinatorial stresses have not been explored. We have developed a common experimental platform to facilitate the comparison of combinatorial stress responses in C. glabrata and C. albicans. This platform is based on the growth of cells in buffered rich medium at 30°C, and was used to define relatively low, medium and high doses of osmotic (NaCl), oxidative (H(2)O(2)) and nitrosative stresses (e.g., dipropylenetriamine (DPTA)-NONOate). The effects of combinatorial stresses were compared with the corresponding individual stresses under these growth conditions. We show for the first time that certain combinations of combinatorial stress are especially potent in terms of their ability to kill C. albicans and C. glabrata and/or inhibit their growth. This was the case for combinations of osmotic plus oxidative stress and for oxidative plus nitrosative stress. We predict that combinatorial stresses may be highly significant in host defences against these pathogenic yeasts.


Subject(s)
Candida albicans/physiology , Candida glabrata/physiology , Microbial Viability/drug effects , Stress, Physiological , Candida albicans/drug effects , Candida albicans/growth & development , Candida glabrata/drug effects , Candida glabrata/growth & development , Culture Media/chemistry , Humans , Mycology/methods , Nitroso Compounds/toxicity , Osmotic Pressure , Oxidative Stress , Temperature
5.
Mol Syst Biol ; 5: 327, 2009.
Article in English | MEDLINE | ID: mdl-19920812

ABSTRACT

Modern genomics technologies generate huge data sets creating a demand for systems level, experimentally verified, analysis techniques. We examined the transcriptional response to DNA damage in a human T cell line (MOLT4) using microarrays. By measuring both mRNA accumulation and degradation over a short time course, we were able to construct a mechanistic model of the transcriptional response. The model predicted three dominant transcriptional activity profiles-an early response controlled by NFkappaB and c-Jun, a delayed response controlled by p53, and a late response related to cell cycle re-entry. The method also identified, with defined confidence limits, the transcriptional targets associated with each activity. Experimental inhibition of NFkappaB, c-Jun and p53 confirmed that target predictions were accurate. Model predictions directly explained 70% of the 200 most significantly upregulated genes in the DNA-damage response. Genome-wide transcriptional modelling (GWTM) requires no prior knowledge of either transcription factors or their targets. GWTM is an economical and effective method for identifying the main transcriptional activators in a complex response and confidently predicting their targets.


Subject(s)
Genome, Human/genetics , Models, Genetic , Transcription, Genetic/genetics , Cell Line , Cluster Analysis , Computational Biology , DNA Damage/genetics , Gene Expression Profiling , Humans , Oligonucleotide Array Sequence Analysis , RNA Stability/radiation effects , RNA, Messenger/genetics , RNA, Messenger/metabolism , Radiation, Ionizing , Reproducibility of Results , Time Factors , Transcription Factors/metabolism , Transcription, Genetic/radiation effects , Tumor Suppressor Protein p53/metabolism , Up-Regulation/genetics , Up-Regulation/radiation effects
6.
J Infect Dis ; 200(8): 1341-51, 2009 Oct 15.
Article in English | MEDLINE | ID: mdl-19754306

ABSTRACT

BACKGROUND: Invasive aspergillosis (IA) is the most common cause of death associated with fungal infection in the developed world. Historically, susceptibility to IA has been associated with prolonged neutropenia; however, IA has now become a major problem in patients on calcineurin inhibitors and allogenic hematopoietic stem cell transplant patients following engraftment. These observations suggest complex cellular mechanisms govern immunity to IA. METHODS: To characterize the key early events that govern outcome from infection with Aspergillus fumigatus, we performed a comparative immunochip microarray analysis of the pulmonary transcriptional response to IA between cyclophosphamide-treated mice and immunocompetent mice at 24 h after infection. RESULTS: We demonstrate that death due to infection is associated with a failure to generate an incremental interferon-gamma response, increased levels of interleukin-5 and interleukin-17a transcript, coordinated expression of a network of tumor necrosis factor-alpha-related genes, and increased levels of tumor necrosis factor-alpha. In contrast, clearance of infection is associated with increased expression of a number genes encoding proteins involved in innate pathogen clearance, as well as apoptosis and control of inflammation. CONCLUSION: This first organ-level immune response transcriptional analysis for IA has enabled us to gain new insights into the mechanisms that govern fungal immunity in the lung.


Subject(s)
Interferon-gamma/metabolism , Interleukin-17/metabolism , Pulmonary Aspergillosis/immunology , Pulmonary Aspergillosis/metabolism , Tumor Necrosis Factor-alpha/metabolism , Animals , DNA, Complementary , Gene Expression Regulation/immunology , Immunocompromised Host , Interferon-gamma/genetics , Interleukin-17/genetics , Male , Mice , Tumor Necrosis Factor-alpha/genetics
7.
Am J Pathol ; 174(3): 1097-108, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19234137

ABSTRACT

Intraplaque hemorrhage accelerates atherosclerosis via oxidant stress and contributes to lesion development and destabilization. Normally, macrophages scavenge hemoglobin-haptoglobin (HbHp) complexes via CD163, and this process provokes the secretion of the anti-inflammatory atheroprotective cytokine interleukin (IL)-10. We therefore tested the hypothesis that HbHp complexes may drive monocyte differentiation to an atheroprotective phenotype. Examination of the macrophage phenotype in hemorrhaged atherosclerotic plaques revealed a novel hemorrhage-associated macrophage population (HA-mac), defined by high levels of CD163, but low levels of human leukocyte antigen-DR. HA-mac contained more iron, a pro-oxidant catalyst, but paradoxically had less oxidative injury, measured by 8-oxo-guanosine content. Differentiating monocytes with HbHp complexes reproduced the CD163(high) human leukocyte antigen-DR(low) HA-mac phenotype in vitro. These in vitro HA-mac cells cleared Hb more quickly, and consistently showed less hydrogen peroxide release, highly reactive oxygen species and oxidant stress, and increased survival. Differentiation to HA-mac was prevented by neutralizing IL-10 antibodies, indicating that IL-10 mediates an autocrine feedback mechanism in this system. Nonlinear dynamic modeling showed that an IL-10/CD163-positive feedback loop drove a discrete HA-mac lineage. Simulations further indicated an all-or-none switch to HA-mac at threshold levels of HbHp, and this conversion was experimentally verified. These data demonstrate the creation of a novel atheroprotective (HA-mac) macrophage subpopulation in response to intraplaque hemorrhage and raise the possibility that therapeutically reproducing this macrophage phenotype may be cardio-protective in cases of atherosclerosis.


Subject(s)
Atherosclerosis/genetics , Atherosclerosis/prevention & control , Coronary Stenosis/pathology , Macrophages/pathology , Antigens, CD/analysis , Antigens, Differentiation, Myelomonocytic/analysis , Autopsy , Coronary Stenosis/complications , Hemorrhage/pathology , Humans , Microscopy, Confocal , Monocytes/pathology , Monocytes/physiology , Oxidative Stress , Phenotype , Receptors, Cell Surface/analysis
8.
J Theor Biol ; 257(4): 533-42, 2009 Apr 21.
Article in English | MEDLINE | ID: mdl-19168080

ABSTRACT

The malaria parasite causes lysis of red blood cells, resulting in anemia, a major cause of mortality and morbidity. Intuitively, one would expect the production of red blood cells to increase in order to compensate for this loss. However, it has been observed that this response is weaker than would be expected. Furthermore, iron supplementation for iron deficient children in malaria endemic regions can paradoxically adversely affect the clinical outcome of malaria infection. A possible explanation may lie in the preference that some malaria parasites show for infecting immature red blood cells (reticulocytes). In the presence of a parasite preference for immature red cells, a rise in red cell production can 'fuel the fire' of infection by increasing the availability of the parasite's preferred target cell. We present a mathematical model of red blood cell production and infection in order to explore this hypothesis. We assess the effect of varying the reticulocyte replacement rate and preference of the parasite for reticulocytes on four key outcome measures assessing anemia and parasitemia. For a given level of parasite preference for reticulocytes we uncover an optimal erythropoietic response which minimizes disease severity. Increasing red blood cell production much above this optimum confers no benefit to the patient, and in fact can increase the degree of anemia and parasitemia. These conclusions are consistent with epidemiological studies demonstrating that both iron deficiency and anemia are protective against severe malaria, whilst iron supplementation in malaria endemic regions is with an increased number of malaria related adverse effects. Thus, suppression of red blood cell production, rather than being an unfortunate side effect of inflammation, may be a host protective effect against severe malarial anemia.


Subject(s)
Anemia/parasitology , Erythropoiesis/physiology , Malaria/complications , Models, Biological , Anemia/blood , Anemia/physiopathology , Host-Parasite Interactions , Humans , Malaria/blood , Malaria/physiopathology , Parasitemia/blood , Parasitemia/parasitology , Parasitemia/physiopathology , Reticulocytes/parasitology
9.
J Cell Sci ; 121(Pt 23): 3890-900, 2008 Dec 01.
Article in English | MEDLINE | ID: mdl-19001500

ABSTRACT

The postnatal mouse ovary is rich in quiescent and early-growing oocytes, each one surrounded by a layer of somatic granulosa cells (GCs) on a basal lamina. As oocytes start to grow the GCs change shape from flattened to cuboidal, increase their proliferation and form multiple layers, providing a unique model for studying the relationship between cell shape, proliferation and multilayering within the context of two different intercommunicating cell types: somatic and germ cells. Proliferation of GCs was quantified using immunohistochemistry for Ki67 and demonstrated that, unusually, cuboidal cells divided more than flat cells. As a second layer of GCs started to appear, cells on the basal lamina reached maximum packing density and the axes of their mitoses became perpendicular to the basal lamina, resulting in cells dividing inwards to form second and subsequent layers. Proliferation of basal GCs was less than that of inner cells. Ultrastructurally, collagen fibrils outside the basal lamina became more numerous as follicles developed. We propose that the basement membrane and/or theca cells that surround the follicle provide an important confinement for rapidly dividing columnar cells so that they attain maximum packing density, which restricts lateral mitosis and promotes inwardly oriented cell divisions and subsequent multilayering.


Subject(s)
Cell Proliferation , Granulosa Cells/cytology , Ovarian Follicle/growth & development , Animals , Cell Shape , Female , Granulosa Cells/ultrastructure , Immunohistochemistry , Ki-67 Antigen/metabolism , Mice , Microscopy, Electron, Transmission , Mitosis , Oocytes/growth & development , Ovarian Follicle/ultrastructure , Ovary/metabolism , Ovary/ultrastructure , Theca Cells/metabolism , Theca Cells/ultrastructure
10.
PLoS Comput Biol ; 4(10): e1000192, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18846201

ABSTRACT

Over the last few years, experimental data on the fluctuations in gene activity between individual cells and within the same cell over time have confirmed that gene expression is a "noisy" process. This variation is in part due to the small number of molecules taking part in some of the key reactions that are involved in gene expression. One of the consequences of this is that protein production often occurs in bursts, each due to a single promoter or transcription factor binding event. Recently, the distribution of the number of proteins produced in such bursts has been experimentally measured, offering a unique opportunity to study the relative importance of different sources of noise in gene expression. Here, we provide a derivation of the theoretical probability distribution of these bursts for a wide variety of different models of gene expression. We show that there is a good fit between our theoretical distribution and that obtained from two different published experimental datasets. We then prove that, irrespective of the details of the model, the burst size distribution is always geometric and hence determined by a single parameter. Many different combinations of the biochemical rates for the constituent reactions of both transcription and translation will therefore lead to the same experimentally observed burst size distribution. It is thus impossible to identify different sources of fluctuations purely from protein burst size data or to use such data to estimate all of the model parameters. We explore methods of inferring these values when additional types of experimental data are available.


Subject(s)
Gene Expression , Models, Genetic , Computational Biology , Data Interpretation, Statistical , Gene Expression Profiling/statistics & numerical data , Models, Statistical , Proteins/genetics , Proteins/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism
11.
Nat Rev Microbiol ; 6(7): 520-8, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18536727

ABSTRACT

The human immune response does an excellent job of clearing most of the pathogens that we encounter throughout our lives. However, some pathogens persist for the lifetime of the host. Despite many years of research, scientists have yet to determine the basis of persistence of most pathogens, and have therefore struggled to develop reliable prevention and treatment strategies. Systems biology provides a new and integrative tool that will help to achieve these goals. In this article, we use Mycobacterium tuberculosis as an example of how systems-biology approaches have begun to make strides in uncovering important facets of the host-pathogen interaction.


Subject(s)
Bacteriology/trends , Mycobacterium tuberculosis/genetics , Proteome/physiology , Systems Biology , Tuberculosis/physiopathology , Humans , Molecular Epidemiology , Tuberculosis/immunology , Tuberculosis/prevention & control , Tuberculosis/therapy
12.
Hum Reprod Update ; 14(4): 367-78, 2008.
Article in English | MEDLINE | ID: mdl-18499708

ABSTRACT

BACKGROUND: Polycystic ovary syndrome (PCOS) is the commonest cause of anovulatory infertility and menstrual cycle abnormalities, but the factors responsible for failure to select a dominant follicle remain unclear. METHOD: Source is authors' own studies and search of the relevant literature. RESULTS: Arrest of antral follicle growth is associated with an abnormal endocrine environment involving hypersecretion of luteinizing hormone and insulin (and perhaps hyperandrogenism). The net effect is secondary suppression of FSH, which leads to inhibition of maturation of otherwise healthy follicles in the cohort. There is, however, emerging evidence for an intrinsic abnormality of folliculogenesis in PCOS that affects the very earliest, gonadotrophin independent, stages of follicle development. There is an increased density of small pre-antral follicles and an increased proportion of early growing follicles. These abnormalities in anovulatory PCOS are further defined by abnormal granulosa cell proliferation and disparate growth of oocyte and surrounding granulosa cells. This suggests that the normal 'dialogue' between oocyte and granulosa cells in these early growing follicles is altered. There is evidence that abnormal, local (follicle-to-follicle) signalling of anti-Müllerian hormone may play a part in disordered folliculogenesis, but it is plausible that other local regulators that have been implicated in normal and abnormal pre-antral follicle development-such as insulin-like growth factors and sex steroids-have a role in aberrant folliculogenesis in PCOS. CONCLUSIONS: Significant abnormalities in the very earliest stages of folliculogenesis may be the root cause of anovulation in PCOS.


Subject(s)
Anovulation/etiology , Ovarian Follicle/physiopathology , Polycystic Ovary Syndrome/complications , Anovulation/metabolism , Anti-Mullerian Hormone/metabolism , Anti-Mullerian Hormone/physiology , Cell Proliferation , Female , Gonadal Steroid Hormones/metabolism , Gonadal Steroid Hormones/physiology , Humans , Insulin Resistance , Models, Biological , Oocytes/cytology , Oocytes/physiology , Ovarian Follicle/growth & development , Ovarian Follicle/metabolism , Polycystic Ovary Syndrome/metabolism , Signal Transduction , Somatomedins/metabolism , Somatomedins/physiology
13.
Eur J Cardiothorac Surg ; 33(3): 334-40, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18165020

ABSTRACT

OBJECTIVES: Databases almost invariably contain some errors and improvements to the quality of recorded data are costly. We sought to assess the extent to which given levels of error in a clinical database can lead to misleading mortality rates being derived. METHODS: We deliberately seeded a large database concerning congenital heart surgery involving over 17,600 operations, which we assumed to be error free, with errors at known rates of 0-20%. The effects of three different types of random error were explored: data omission, outcome miscoding (alive or dead) and the miscoding of procedures. For each error type, we compared the mortality rates calculated from the 'seeded' database to those calculated from the pristine database. RESULTS: Outcome miscoding typically results in overestimated mortality rates which for low-risk procedures may well give estimates over double the true value. Random data omission has relatively little effect. If procedure types are miscoded, procedure-specific mortality estimates for high-risk operations tend to be underestimates and those for low-risk operations overestimates. A mathematical model developed to examine these effects accurately forecasted the results of such error-seeding experiments. Software to implement this model is available free of charge on the Internet. CONCLUSION: Even small levels of data error can substantially affect the accuracy of mortality rate estimates, especially for low-risk operations. Such inaccuracy could lead to misleading analysis of institutional and individual surgeons' results. Our results suggest that caution is warranted in interpreting the mortality estimates derived from clinical databases. Our analysis goes beyond the realms of surgical mortality and concerns all adverse events whose frequency is rare.


Subject(s)
Cardiac Surgical Procedures/mortality , Databases, Factual/standards , Heart Defects, Congenital/surgery , Hospital Mortality , Mortality , Heart Defects, Congenital/mortality , Humans
14.
Philos Trans A Math Phys Eng Sci ; 366(1865): 519-44, 2008 Feb 28.
Article in English | MEDLINE | ID: mdl-17698469

ABSTRACT

Ordinary differential equations (ODEs) are widely used to model many systems in physics, chemistry, engineering and biology. Often one wants to compare such equations with observed time course data, and use this to estimate parameters. Surprisingly, practical algorithms for doing this are relatively poorly developed, particularly in comparison with the sophistication of numerical methods for solving both initial and boundary value problems for differential equations, and for locating and analysing bifurcations. A lack of good numerical fitting methods is particularly problematic in the context of systems biology where only a handful of time points may be available. In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are high and the number of data points is low. It employs a spline-based collocation scheme and alternates linear least squares minimization steps with repeated estimates of the noise-free values of the variables. This is reminiscent of expectation-maximization methods widely used for problems with nuisance parameters or missing data.


Subject(s)
Models, Biological , Models, Statistical , Systems Biology/statistics & numerical data , Algorithms , Ataxia Telangiectasia Mutated Proteins , Cell Cycle Proteins/physiology , Computational Biology , DNA-Binding Proteins/physiology , Data Interpretation, Statistical , Genes, p53 , Linear Models , Mathematics , Protein Serine-Threonine Kinases/physiology , Proto-Oncogene Proteins c-mdm2/physiology , Time Factors , Tumor Suppressor Protein p53/physiology , Tumor Suppressor Proteins/physiology
15.
J Clin Endocrinol Metab ; 92(11): 4418-26, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17698906

ABSTRACT

CONTEXT: Polycystic ovary syndrome (PCOS) is the most common endocrine disorder in women, but its etiology remains obscure. Recent data suggest that an intrinsic abnormality of early follicle development in the ovary is key to the pathogenesis of PCOS. We have recently found that in PCOS the proportion of primordial follicles is decreased with a reciprocal increase in the proportion of primary follicles. OBJECTIVE: Our aim was to examine whether the accelerated transition of follicles from primordial to primary stages in polycystic ovaries (PCO) is due to increased granulosa cell (GC) division. DESIGN: This study is a comparison of expression of minichromosome maintenance protein 2 (MCM2) (present in the nuclei of cells that are licensed to divide) in archive tissue from normal and PCO. SETTING: This is a laboratory-based study. PATIENTS: There were 16 women with regular cycles (six with normal and 10 with PCO) and five anovulatory women with PCO, classified histologically, with reference to menstrual history and ultrasound. MAIN OUTCOME MEASURES: The presence of MCM2 expression in the GCs of 1,371 follicles was determined. RESULTS: GC proliferation was increased in anovulatory PCO compared with both normal and ovulatory PCO, with an increased proportion of preantral follicles with MCM2-positive GCs (P

Subject(s)
Granulosa Cells/pathology , Ovarian Follicle/pathology , Polycystic Ovary Syndrome/pathology , Adult , Cell Count , Cell Cycle Proteins/genetics , Cell Division/physiology , Cell Shape/physiology , Female , Granulosa Cells/physiology , Humans , Immunohistochemistry , Minichromosome Maintenance Complex Component 2 , Nuclear Proteins/genetics , Oocytes/growth & development , Oocytes/pathology , Oocytes/ultrastructure , Tissue Fixation
16.
BMC Bioinformatics ; 8: 196, 2007 Jun 12.
Article in English | MEDLINE | ID: mdl-17565685

ABSTRACT

BACKGROUND: Quantifying cell division and death is central to many studies in the biological sciences. The fluorescent dye CFSE allows the tracking of cell division in vitro and in vivo and provides a rich source of information with which to test models of cell kinetics. Cell division and death have a stochastic component at the single-cell level, and the probabilities of these occurring in any given time interval may also undergo systematic variation at a population level. This gives rise to heterogeneity in proliferating cell populations. Branching processes provide a natural means of describing this behaviour. RESULTS: We present a likelihood-based method for estimating the parameters of branching process models of cell kinetics using CFSE-labeling experiments, and demonstrate its validity using synthetic and experimental datasets. Performing inference and model comparison with real CFSE data presents some statistical problems and we suggest methods of dealing with them. CONCLUSION: The approach we describe here can be used to recover the (potentially variable) division and death rates of any cell population for which division tracking information is available.


Subject(s)
Apoptosis/physiology , Cell Proliferation , Cells, Cultured/cytology , Cells, Cultured/physiology , Fluoresceins , Image Interpretation, Computer-Assisted/methods , Microscopy, Fluorescence/methods , Succinimides , Algorithms , Computer Simulation , Models, Biological
17.
PLoS Med ; 4(5): e177, 2007 May.
Article in English | MEDLINE | ID: mdl-17518516

ABSTRACT

BACKGROUND: The asymptomatic phase of HIV infection is characterised by a slow decline of peripheral blood CD4(+) T cells. Why this decline is slow is not understood. One potential explanation is that the low average rate of homeostatic proliferation or immune activation dictates the pace of a "runaway" decline of memory CD4(+) T cells, in which activation drives infection, higher viral loads, more recruitment of cells into an activated state, and further infection events. We explore this hypothesis using mathematical models. METHODS AND FINDINGS: Using simple mathematical models of the dynamics of T cell homeostasis and proliferation, we find that this mechanism fails to explain the time scale of CD4(+) memory T cell loss. Instead it predicts the rapid attainment of a stable set point, so other mechanisms must be invoked to explain the slow decline in CD4(+) cells. CONCLUSIONS: A runaway cycle in which elevated CD4(+) T cell activation and proliferation drive HIV production and vice versa cannot explain the pace of depletion during chronic HIV infection. We summarize some alternative mechanisms by which the CD4(+) memory T cell homeostatic set point might slowly diminish. While none are mutually exclusive, the phenomenon of viral rebound, in which interruption of antiretroviral therapy causes a rapid return to pretreatment viral load and T cell counts, supports the model of virus adaptation as a major force driving depletion.


Subject(s)
CD4-Positive T-Lymphocytes/immunology , HIV Infections/immunology , Immunologic Memory , Models, Immunological , Cell Proliferation , Disease Progression , Homeostasis , Humans , Thymus Gland/immunology , Viral Load
18.
J Clin Endocrinol Metab ; 92(5): 1975-8, 2007 May.
Article in English | MEDLINE | ID: mdl-17341570

ABSTRACT

CONTEXT: In polycystic ovary syndrome (PCOS), an increased proportion of follicles leave the primordial (resting) pool and initiate growth. However, there is little evidence for a reduced reproductive life span (early menopause) in women with PCOS, suggesting that the dynamics of follicle growth, and of follicle loss by atresia, is altered in PCOS. OBJECTIVE: The aim of this study was to investigate the possibility that loss of preantral follicles by atresia is reduced in PCOS, leading to prolonged follicle survival. DESIGN: We compared follicle growth in normal and polycystic ovaries using cultures of small ovarian biopsies. SETTING: Tissue samples were obtained at routine laparoscopy from 12 patients with anovulatory PCOS and 16 controls and processed in an ovarian physiology laboratory. MAIN OUTCOME MEASURES: We performed morphometric analysis of follicle population in tissue fixed at time of biopsy (d 0) or after 5, 10, or 15 d in culture. Analyses included assessment of follicle and oocyte diameter, number and proportion of primordial and growing follicles, and number and proportion of atretic follicles. RESULTS: In tissue fixed on d 0, the proportion of healthy growing follicles was, as expected, greater in ovaries from PCOS patients than in normal ovaries (64 vs. 28%; P = 0.0005), but there were no differences between PCOS and normal tissue during culture. The rate of atresia throughout the period of culture in follicles was, however, significantly lower in PCOS tissue (P < 0.0001). After culture, 80% of follicles in normal ovarian tissue were atretic compared with 53% in PCOS biopsies. CONCLUSION: Follicles from polycystic ovaries demonstrate a decreased rate of atresia in culture, suggesting a mechanism for maintaining a larger follicle pool throughout reproductive life.


Subject(s)
Ovarian Follicle/pathology , Polycystic Ovary Syndrome/pathology , Adult , Cell Survival/physiology , Cells, Cultured , Female , Follicular Atresia/physiology , Humans , Laparoscopy , Tissue Culture Techniques
19.
Immunol Rev ; 216: 213-31, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17367345

ABSTRACT

Oscillations are surprisingly common in the immune system, both in its healthy state and in disease. The most famous example is that of periodic fevers caused by the malaria parasite. A number of hereditary disorders, which also cause periodic fevers, have also been known for a long time. Various reports of oscillations in cytokine concentrations following antigen challenge have been published over at least the past three decades. Oscillations can also occur at the intracellular level. Calcium oscillations following T-cell activation are familiar to all immunologists, and metabolic and reactive oxygen species oscillations in neutrophils have been well documented. More recently, oscillations in nuclear factor kappaB activity following stimulation by tumor necrosis factor alpha have received considerable publicity. However, despite all of these examples, oscillations in the immune system still tend to be considered mainly as pathological aberrations, and their causes and significance remained largely unknown. This is partly because of a lack of awareness within the immunological community of the appropriate theoretical frameworks for describing and analyzing such behavior. We provide an introduction to these frameworks and give a survey of the currently known oscillations that occur within the immune system.


Subject(s)
Immune System/immunology , Models, Immunological , Animals , Humans , Immunity/immunology , Periodicity , Signal Transduction
20.
J Endocrinol ; 192(2): 421-8, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17283242

ABSTRACT

Exposure to excess androgens in utero induces irreversible changes in gonadotrophin secretion and results in disrupted reproductive endocrine and ovarian function in adulthood, in a manner reminiscent of the common clinical endocrinopathy of polycystic ovary syndrome (PCOS). We have recently identified an abnormality in early follicle development in PCOS which we suggested might be an androgenic effect. We propose that altered ovarian function in androgenized ewes is due to prenatal androgens not only causing an abnormality of gonadotrophin secretion, but also exerting a direct effect on the early stages of folliculogenesis. Therefore, in this study, we explored the possible differences between small preantral follicles in the ovarian cortex of androgenized female lambs with those of normal lambs. At 8 months of age, small ovarian cortical biopsies (approximately 5 mm3) were obtained at laparotomy from nine female lambs that had been exposed to androgens in utero from embryonic days 30 to 90 of a 147-day pregnancy, and 11 control female lambs. Further, ovarian tissue was obtained at 20 months of age from ten androgenized and nine control animals. Tissue was either fixed immediately for histology or cultured for up to 15 days prior to fixing. The number of follicles in haematoxylin and eosin-stained sections was counted and recorded along with the stage of development. Before culture, the total follicle density (follicles/mm3 tissue) was not statistically significantly different between the two types of ovary at either 8 or 20 months of age. Furthermore, there were no statistically significant differences in the density of follicles at each stage of development. However, there was a lower percentage of primordial follicles, but a higher percentage of primary follicles, in biopsies taken at 8 months from androgenized lambs when compared with controls. At 20 months, the proportions of follicles at the primordial and primary stages were not significantly different between the two groups, but this was mainly attributable to an increase in the proportion of growing follicles in biopsies from control animals. Culture of ovarian cortex from 8-month-old lambs resulted in a progressive increase in the proportion of growing follicles when compared with tissue fixed on the day of surgery. However, there was no difference between androgenized and control tissue in the percentage of growing follicles. The increase in the proportion of growing follicles in the cortex of androgenized animals is reminiscent of similar observations in human polycystic ovaries and suggests that excess exposure to androgen in early life plays a part in the accelerated progression of follicle development from the primordial to the primary stage in polycystic ovaries.


Subject(s)
Androgens/adverse effects , Ovarian Follicle/physiology , Polycystic Ovary Syndrome/etiology , Prenatal Exposure Delayed Effects , Androgens/metabolism , Androstenedione/analysis , Androstenedione/metabolism , Animals , Female , Genitalia/pathology , Models, Animal , Ovarian Follicle/pathology , Ovary , Polycystic Ovary Syndrome/metabolism , Polycystic Ovary Syndrome/pathology , Pregnancy , Progesterone/analysis , Progesterone/metabolism , Sheep , Tissue Culture Techniques , Virilism
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