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1.
Huan Jing Ke Xue ; 45(9): 5244-5253, 2024 Sep 08.
Article in Chinese | MEDLINE | ID: mdl-39323143

ABSTRACT

Taking Liangshui River, the reclaimed water-receiving river in Beijing, as the research area, the types, detection frequencies, and concentrations of 16 antibiotics in water and sediment were analyzed, and their temporal-spatial variation and occurrence characteristics were discussed. The results showed that nine and 13 target antibiotics were detected in the water and sediment of Liangshui River, with the antibiotic concentration ranges of ND-116.68 ng·L-1 and ND-235.42 ng·g-1, respectively. The main antibiotics in water were ofloxacin and clarithromycin, and the main antibiotic in sediment was ofloxacin. The total concentration of antibiotics in water and sediment showed a gradual decrease from the upstream to the downstream in the Liangshui River mainstream, and the concentration of antibiotics in tributaries was higher than that in the mainstream. The inflow of tributaries had an obvious impact on the antibiotic concentration in water for the Liangshui River but had little impact on its sediment. The total concentration of antibiotics in water and sediment during the dry season was generally higher than that during the wet season. The detected antibiotics with the highest concentration were quinolones in water during the wet season and macrolides in the dry season. Quinolones had the highest concentration in sediment in both seasons. The ecological risk assessment results showed that clarithromycin had a low risk in water in the dry season and sediment in both seasons, whereas the other antibiotics had no risk. The combined ecological risk and the most sensitive trophic level ecological risk assessment showed that all sampling sites had low risk or no risk, and the risk of the dry season was generally greater than that of the wet season. The risk values of some sampling points were close to the medium risk threshold during the dry season, which requires further attention.


Subject(s)
Anti-Bacterial Agents , Environmental Monitoring , Geologic Sediments , Rivers , Water Pollutants, Chemical , Rivers/chemistry , Water Pollutants, Chemical/analysis , Anti-Bacterial Agents/analysis , Risk Assessment , Beijing , Geologic Sediments/chemistry , Ofloxacin/analysis , China , Waste Disposal, Fluid/methods , Clarithromycin/analysis
2.
Comput Struct Biotechnol J ; 23: 3368-3378, 2024 Dec.
Article in English | MEDLINE | ID: mdl-39310276

ABSTRACT

Background: The Wnt/ß-catenin signaling pathway is critical in kidney development, yet its specific effects on gene expression in different embryonic kidney cell types are not fully understood. Methods: Wnt/ß-catenin signaling was activated in mouse E12.5 kidneys in vitro using CHIR99021, with RNA sequencing performed afterward, and the results were compared to DMSO controls (dataset GSE131240). Differential gene expression in ureteric buds and cap mesenchyme following pathway activation (datasets GSE20325 and GSE39583) was analyzed. Single-cell RNA-seq data from the Mouse Cell Atlas was used to link differentially expressed genes (DEGs) with kidney cell types. ß-catenin ChIP-seq data (GSE39837) identified direct transcriptional targets. Results: Activation of Wnt/ß-catenin signaling led to 917 significant DEGs, including the upregulation of Notum and Apcdd1 and the downregulation of Crym and Six2. These DEGs were involved in kidney development and immune response. Single-cell analysis identified 787 DEGs across nineteen cell subtypes, with Macrophage_Apoe high cells showing the most pronounced enrichment of Wnt/ß-catenin-activated genes. Gene expression profiles in ureteric buds and cap mesenchyme differed significantly upon ß-catenin manipulation, with cap mesenchyme showing a unique set of DEGs. Analysis of ß-catenin ChIP-seq data revealed 221 potential direct targets, including Dpp6 and Fgf12. Conclusion: This study maps the complex gene expression driven by Wnt/ß-catenin signaling in embryonic kidney cell types. The identified DEGs and ß-catenin targets elucidate the molecular details of kidney development and the pathway's role in immune processes, providing a foundation for further research into Wnt/ß-catenin signaling in kidney development and disease.

3.
Sci Total Environ ; 952: 175877, 2024 Nov 20.
Article in English | MEDLINE | ID: mdl-39226951

ABSTRACT

Infertility has gradually become a global health concern, and evidence suggests that exposure to environmental endocrine-disrupting chemicals (EDCs) represent one of the key causes of infertility. Benzo(a)pyrene (BaP) is a typical EDC that is widespread in the environment. Previous studies have detected BaP in human urine, semen, cervical mucus, oocytes and follicular fluid, resulting in reduced fertility and irreversible reproductive damage. However, the mechanisms underlying the effects of gestational BaP exposure on offspring fertility in male mice have not been fully explored. In this study, pregnant mice were administered BaP at doses of 0, 5, 10 and 20 mg/kg/day via gavage from Days 7.5 to 12.5 of gestation. The results revealed that BaP exposure during pregnancy disrupted the structural integrity of testicular tissue, causing a disorganized arrangement of spermatogenic cells, compromised sperm quality, elevated levels of histone modifications and increased apoptosis in the testicular tissue of F1 male mice. Furthermore, oxidative stress was also increased in the testicular tissue of F1 male mice. BaP activated the AhR/ERα signaling pathway, affected H3K4me3 expression and induced apoptosis in testicular tissue. AhR and Cyp1a1 were overexpressed, and the expression of key molecules in the antioxidant pathway, including Keap1 and Nrf2, was reduced. The combined effects of these molecules led to apoptosis in testicular tissues, damaging and compromising sperm quality. This impairment in testicular cells further contributed to compromised testicular tissues, ultimately impacting the reproductive health of F1 male mice.


Subject(s)
Apoptosis , Benzo(a)pyrene , Oxidative Stress , Animals , Benzo(a)pyrene/toxicity , Male , Female , Mice , Oxidative Stress/drug effects , Apoptosis/drug effects , Pregnancy , Testis/drug effects , Testis/metabolism , Endocrine Disruptors/toxicity , Prenatal Exposure Delayed Effects/chemically induced , Germ Cells/drug effects , Spermatozoa/drug effects , Maternal Exposure/adverse effects , Histones/metabolism , Histone Code/drug effects
4.
Bioinformatics ; 2024 Sep 18.
Article in English | MEDLINE | ID: mdl-39292540

ABSTRACT

MOTIVATION: Exploring the association between drugs and targets is essential for drug discovery and repurposing. Comparing with the traditional methods that regard the exploration as a binary classification task, predicting the drug-target binding affinity can provide more specific information. Many studies work based on the assumption that similar drugs may interact with the same target. These methods constructed a symmetric graph according to the undirected drug similarity or target similarity. Although these similarities can measure the difference between two molecules, it is unable to analyze the inclusion relationship of their substructure. For example, if drug A contains all the substructures of drug B, then in the message-passing mechanism of the graph neural network, drug A should acquire all the properties of drug B, while drug B should only obtain some of the properties of A. RESULTS: To this end, we proposed a structure-inclusive similarity (SIS) which measures the similarity of two drugs by considering the inclusion relationship of their substructures. Based on SIS, we constructed a drug graph and a target graph, respectively, and predicted the binding affinities between drugs and targets by a graph convolutional network-based model. Experimental results show that considering the inclusion relationship of the substructure of two molecules can effectively improve the accuracy of the prediction model. The performance of our SIS-based prediction method outperforms several state-of-the-art methods for drug-target binding affinity prediction. The case studies demonstrate that our model is a practical tool to predict the binding affinity between drugs and targets. AVAILABILITY: Source codes and data are available at https://github.com/HuangStomach/SISDTA. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

5.
Curr Biol ; 34(17): 3996-4006.e11, 2024 Sep 09.
Article in English | MEDLINE | ID: mdl-39146937

ABSTRACT

The Yellow River Delta played a vital role in the development of the Neolithic civilization of China. However, the population history of this region from the Neolithic transitions to the present remains poorly understood due to the lack of ancient human genomes. This especially holds for key Neolithic transitions and tumultuous turnovers of dynastic history. Here, we report genome-wide data from 69 individuals dating to 5,410-1,345 years before present (BP) at 0.008 to 2.49× coverages, along with 325 present-day individuals collected from 16 cities across Shandong. During the Middle to Late Dawenkou period, we observed a significant influx of ancestry from Neolithic Yellow River farmers in central China and some southern Chinese ancestry that mixed with local hunter-gatherers in Shandong. The genetic heritage of the Shandong Longshan people was found to be most closely linked to the Dawenkou culture. During the Shang to Zhou Dynasties, there was evidence of genetic admixture of local Longshan populations with migrants from the Central Plain. After the Qin to Han Dynasties, the genetic composition of the region began to resemble that of modern Shandong populations. Our genetic findings suggest that the middle Yellow River Basin farmers played a role in shaping the genetic affinity of neighboring populations in northern China during the Middle to Late Neolithic period. Additionally, our findings indicate that the genetic diversity in the Shandong region during the Zhou Dynasty may be linked with their complex ethnicities.


Subject(s)
Genome, Human , Humans , China , History, Ancient , DNA, Ancient/analysis , Human Migration/history , Rivers , Genetics, Population , Archaeology , Genetic Variation , Genomics
6.
Comput Methods Programs Biomed ; 256: 108376, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39173481

ABSTRACT

BACKGROUND AND OBJECTIVE: We develop an efficient deep-learning based dual-domain reconstruction method for sparse-view CT reconstruction with small training parameters and comparable running time. We aim to investigate the model's capability and its clinical value by performing objective and subjective quality assessments using clinical CT projection data acquired on commercial scanners. METHODS: We designed two lightweight networks, namely Sino-Net and Img-Net, to restore the projection and image signal from the DD-Net reconstructed images in the projection and image domains, respectively. The proposed network has small training parameters and comparable running time among dual-domain based reconstruction networks and is easy to train (end-to-end). We prospectively collected clinical thoraco-abdominal CT projection data acquired on a Siemens Biograph 128 Edge CT scanner to train and validate the proposed network. Further, we quantitatively evaluated the CT Hounsfield unit (HU) values on 21 organs and anatomic structures, such as the liver, aorta, and ribcage. We also analyzed the noise properties and compared the signal-to-noise ratio (SNR) and the contrast-to-noise ratio (CNR) of the reconstructed images. Besides, two radiologists conducted the subjective qualitative evaluation including the confidence and conspicuity of anatomic structures, and the overall image quality using a 1-5 likert scoring system. RESULTS: Objective and subjective evaluation showed that the proposed algorithm achieves competitive results in eliminating noise and artifacts, restoring fine structure details, and recovering edges and contours of anatomic structures using 384 views (1/6 sparse rate). The proposed method exhibited good computational cost performance on clinical projection data. CONCLUSION: This work presents an efficient dual-domain learning network for sparse-view CT reconstruction on raw projection data from a commercial scanner. The study also provides insights for designing an organ-based image quality assessment pipeline for sparse-view reconstruction tasks, potentially benefiting organ-specific dose reduction by sparse-view imaging.


Subject(s)
Deep Learning , Image Processing, Computer-Assisted , Signal-To-Noise Ratio , Tomography, X-Ray Computed , Humans , Tomography, X-Ray Computed/methods , Image Processing, Computer-Assisted/methods , Algorithms , Neural Networks, Computer , Radiographic Image Interpretation, Computer-Assisted/methods
7.
Redox Biol ; 76: 103307, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39213701

ABSTRACT

Local oxidative stress in diseases or injury severely hinders cell homeostasis and organ regeneration. Antioxidant therapy is an effective strategy for oxidative stress treatment. Biomaterials with good biocompatibility and reactive oxygen species (ROS) scavenging ability are good choices for antioxidant therapeutics. However, there are few natural biomaterials that are identified with both biocompatibility and strong antioxidant activity. Here, we show, for the first time, that silk fibroin (SF) is a strong antioxidant, which can eliminate ROS in both cells and zebrafish. We further demonstrate that the ß-sheet structures turn into a random coiled structure when SF is treated with hydrogen peroxide. The content of ß-sheet structures can be increased by heating, thus enhancing the antioxidation properties of SF. Therefore, SF can serve as a good antioxidant biomaterial for therapeutics, and its ß-sheet structure-based antioxidation mechanism provides a novel theoretical basis, which could be a new cue for more antioxidant biomaterial discovery and identification.


Subject(s)
Antioxidants , Fibroins , Protein Conformation, beta-Strand , Reactive Oxygen Species , Zebrafish , Fibroins/chemistry , Animals , Antioxidants/pharmacology , Antioxidants/chemistry , Reactive Oxygen Species/metabolism , Humans , Hydrogen Peroxide/chemistry , Bombyx/chemistry , Oxidative Stress/drug effects , Biocompatible Materials/chemistry
8.
Front Plant Sci ; 15: 1435881, 2024.
Article in English | MEDLINE | ID: mdl-39114471

ABSTRACT

Soybeans (Glycine max L.), originating in China, were introduced to South America in the late 19th century after passing through North America. South America is now a major soybean-producing region, accounting for approximately 40% of the global soybean production. Crops like soybeans gradually adapt to the local climate and human-selected conditions, resulting in beneficial variations during cultivation in different regions. Comparing the phenotypic and genetic variations in soybeans across different regions is crucial to determining the variations that may enhance soybean productivity. This study identified seed-related traits and conducted a genetic diversity analysis using 46 breeding soybean varieties from China and Uruguay. Compared to the Chinese soybean germplasm, the Uruguayan equivalent had a lower 100-grain weight, higher oil content, lower protein content, and higher soluble sugar content. Using ZDX1 gene chips, genetic typing was performed on the 46 breeding varieties. Cluster analysis based on SNP sites revealed significant differences in the genetic basis of Sino-Uruguayan soybean germplasm. Selection analysis, including nucleotide polymorphism (π) and fixation indexes (Fst), identified several genomic regions under selection between Sino-Uruguayan soybean germplasm. The selected intervals significantly enriched gene ontology (GO) terms related to protein metabolism. Additionally, differentiation occurred in genes associated with the oil content, seed weight, and cyst nematodes between Sino-Uruguayan soybean germplasm, such as GmbZIP123 and GmSSS1. These findings highlight the differences in seed-related phenotypes between Sino-Uruguay soybean germplasm and provide genomic-level insights into the mechanisms behind phenotypic differences, offering valuable references for understanding soybean evolution and molecular breeding.

9.
Huan Jing Ke Xue ; 45(8): 4540-4552, 2024 Aug 08.
Article in Chinese | MEDLINE | ID: mdl-39168674

ABSTRACT

To explore the relationship between land use and water quality in basins with different land use patterns at different spatial and temporal scales, the Wuding River Basin and Yanhe River Basin were taken as research objects. Based on land use data in 2020 and water quality monitoring data during two periods, the redundancy analysis method was adopted to quantitatively explore the impact of land use on water quality at multiple scales. The results showed that: ① The main land use types in the two basins were cultivated land and grassland, and the difference was mainly in the proportion of bare land and forest land. ② The water quality in spring was better than that in autumn, and the water quality in the middle and lower reaches was worse. ③ The interpretation rate of land use on the riparian scale was the highest in the two basins. ④ The effect of land use on water quality was more significant in the Wuding River Basin in autumn than in spring, whereas the Yanhe River Basin showed the opposite trend. ⑤ Different land uses had different impacts on water quality. Bare land, cultivated land, and Shannon diversity index (SHDI) in the Wuding River Basin had significant impacts on water quality, whereas grassland, cultivated land, artificial surface, patch density (PD), and SHDI were significant in the Yanhe River Basin. Cultivated land and artificial surfaces in the Wuding River Basin had a negative impact on water quality. Grassland and bare land had a negative correlation with most chemical indicators. Artificial surfaces and grasslands in the Yanhe River Basin had a negative impact on water quality, whereas forest land had a significant purification effect. The research results provide important information for sustainable land use and multi-scale landscape planning, which can be used to improve water quality.

10.
J Food Sci ; 2024 Aug 21.
Article in English | MEDLINE | ID: mdl-39169544

ABSTRACT

Green deep eutectic solvents (DESs) are widely used to extract bioactive components from plant biomass; however, hydrophilic DES and bioactive component isolation methods have not been developed. In this study, we synthesized hydrophilic DES (CL-CA-DES) using citric acid and choline chloride. We combined this with environmentally friendly anion- and cation-exchange resin column chromatographic isolation methods. This approach extracted and isolated four polyphenolic compounds (catechins, epicatechins, procyanidin B1, and procyanidin B2) from raspberry root and efficiently recovered the hydrophilic DES. CL-CA-DES extracted significantly higher contents of catechin and procyanidin B2 from raspberry root compared to other solvents. It also extracted substantially higher contents of epicatechin compared to butyl alcohol, 70% ethanol, and water, but there was no significant difference when compared with acetone and ethyl acetate. Additionally, CL-CA-DES extracted significantly higher contents of procyanidin B1 compared to butyl alcohol, water, and ethyl acetate, with no significant difference when compared with 70% ethanol and acetone. The isolation efficiency of the bioactive components in the raspberry root extract by anion- and cation-exchange resin column chromatography was higher than that of the organic solvent extraction and precipitation generation methods, and the method was effective in recovering CL-CA-DES with a recovery rate higher than 60%. In conclusion, this study developed a new method for the efficient recovery of hydrophilic CL-CA-DES, which can be used for isolating polyphenolic compounds from raspberry root.

11.
Meat Sci ; 217: 109610, 2024 Nov.
Article in English | MEDLINE | ID: mdl-39047658

ABSTRACT

This study evaluates longitudinal and transversal intramuscular variations in muscle fiber and meat quality characteristics in bovine M. longissimus thoracis et lumborum (LTL). The LTL muscles (n = 5) from the left side of the beef carcass were cut at intervertebral segment intervals (between 1st thoracic vertebra (TV) and 6th lumbar vertebra (LV)). The pennation angle demonstrated an increasing trend from the anterior to posterior regions regardless of the medial (M-zone) and lateral (L-zone) regions (P < 0.05). The M -zone had a higher pennation angle than the L-zone in the TV and 1st LV (P < 0.05). The cross-sectional area (CSA) of muscle fibers, excluding type I, was larger in the posterior region than the anterior region (P < 0.05). A larger CSA of type I/IIA, IIA, IIAX, and IIX was observed on the lateral side than on the medial side of the 13th TV (P < 0.05). Fiber types were more oxidative (types I and IIA) in the anterior region and more glycolytic (types IIA/IIX and IIX) in the posterior region. Fat content was higher in the anterior region than in the posterior region (P < 0.05). The lowest redness, yellowness, and Warner-Bratzler shear force values were observed in the middle of the muscle, whereas the lightness value was lower in the posterior region regardless of the transversal region (P < 0.05). Therefore, bovine LTL muscles exhibit unique morphological properties and contribute to understanding meat quality associated with morphological and muscle fiber characteristics in relation to their intramuscular variations.


Subject(s)
Muscle Fibers, Skeletal , Red Meat , Animals , Cattle , Red Meat/analysis , Muscle, Skeletal/chemistry , Color , Shear Strength , Glycolysis
12.
Curr Med Sci ; 44(4): 833-840, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38967889

ABSTRACT

OBJECTIVE: Colorectal cancer (CRC), a prevalent malignancy worldwide, has prompted extensive research into anticancer drugs. Traditional Chinese medicinal materials offer promising avenues for cancer management due to their diverse pharmacological activities. This study investigated the effects of Notopterygium incisum, a traditional Chinese medicine named Qianghuo (QH), on CRC cells and the underlying mechanism. METHODS: The sulforhodamine B assay and colony formation assay were employed to assess the effect of QH extract on the proliferation of CRC cell lines HCT116 and Caco-2. Propidium iodide (PI) staining was utilized to detect cell cycle progression, and PE Annexin V staining to detect apoptosis. Western blotting was conducted to examine the levels of apoptotic proteins, including B-cell lymphoma 2-interacting mediator of cell death (BIM), B-cell lymphoma 2 (Bcl-2), Bcl-2-associated X protein (BAX) and cleaved caspase-3, as well as BIM stability after treatment with the protein synthesis inhibitor cycloheximide. The expression of BAX was suppressed using lentivirus-mediated shRNA to validate the involvement of the BIM/BAX axis in QH-induced apoptosis. The in vivo effects of QH extract on tumor growth were observed using a xenograft model. Lastly, APCMin+ mice were used to study the effects of QH extract on primary intestinal tumors. RESULTS: QH extract exhibited significant in vitro anti-CRC activities evidenced by the inhibition of cell proliferation, perturbation of cell cycle progression, and induction of apoptosis. Mechanistically, QH extract significantly increased the stability of BIM proteins, which undergo rapid degradation under unstressed conditions. Knockdown of BAX, the downstream effector of BIM, significantly rescued QH-induced apoptosis. Furthermore, the in vitro effect of QH extract was recapitulated in vivo. QH extract significantly inhibited the tumor growth of HCT116 xenografts in nude mice and decreased the number of intestinal polyps in the APCMin+ mice. CONCLUSION: QH extract promotes the apoptosis of CRC cells by preventing the degradation of BIM.


Subject(s)
Apiaceae , Apoptosis , Bcl-2-Like Protein 11 , Cell Proliferation , Colorectal Neoplasms , Humans , Bcl-2-Like Protein 11/metabolism , Bcl-2-Like Protein 11/genetics , Colorectal Neoplasms/drug therapy , Colorectal Neoplasms/metabolism , Colorectal Neoplasms/pathology , Colorectal Neoplasms/genetics , Animals , Apoptosis/drug effects , Mice , Cell Proliferation/drug effects , HCT116 Cells , Apiaceae/chemistry , Xenograft Model Antitumor Assays , Caco-2 Cells , Plant Extracts/pharmacology , Proteolysis/drug effects , bcl-2-Associated X Protein/metabolism , bcl-2-Associated X Protein/genetics , Drugs, Chinese Herbal/pharmacology , Mice, Nude
13.
Rev Sci Instrum ; 95(7)2024 Jul 01.
Article in English | MEDLINE | ID: mdl-39078241

ABSTRACT

Given the lack of sufficient historical data for aircraft landing gear retractor systems, a model-based fault diagnosis approach is needed to overcome this data deficiency. Meanwhile, inherent uncertainties are inevitable in engineering practice, and it is a great challenge to construct a model that accurately reflects the complexity of the actual system under uncertain conditions. Due to the urgent need for reliable model-based diagnostic methods and the need to cope with inherent uncertainties, this paper proposes an improved fault diagnostic method aimed at increasing the diagnostic efficiency of the landing gear retractor system, a critical component in aircraft take-off and landing operations. Due to a lack of historical data, the model-based fault diagnosis method can solve the problem of lack of data. The proposed uncertainty method addresses the challenge of multiple sources of uncertainty by using subsystems to reduce complexity. Fault diagnosis is achieved by comparing residuals with thresholds derived from a diagnostic bond graph (DBG) model. To address the problem of limited fault data, we modeled and simulated the landing gear retractor system using AMESim®. In addition, the linear fractional transform (LFT) approach has been used to resolve parametric uncertainties, but is unable to resolve system structural uncertainties. Therefore, we also analyzed the comparative fault diagnosis results derived from the linear fractional transformation-DBG (LFT-DBG) and the subsystem-DBG approaches. The experimental results support the effectiveness of the subsystem approach in improving fault diagnosis accuracy and reliability, highlighting its potential as a viable diagnostic strategy in aerospace engineering applications.

14.
J Colloid Interface Sci ; 677(Pt A): 79-89, 2024 Jul 25.
Article in English | MEDLINE | ID: mdl-39083894

ABSTRACT

Carbon based materials are widely used in the preparation of microwave absorption materials due to their low density, high attenuation loss and large specific surface area. However, their high conductivity usually leads to high reflection loss. In this study, multi-layer heterogeneous interfaces were constructed in liquid metal graphite hybrid powder to reduce reflection loss and enhance microwave absorption performance. Gallium oxide (Ga2O3) layer was formed in Ga coated graphite powder to improve impedance matching and attenuation constant via an annealing treatment. Specifically, the hybrid particles with 50 wt% Ga and being annealed at 120 °C for 2 h have a minimum reflection loss (RLmin) value of -42.68 dB and a maximum effective absorption bandwidth (EAB) of 4.11 GHz at a thickness of 3.3 mm. The hybrid particles not only have multi-layer structures with different electrical conductivity, but also form heterojunctions between different interfaces, which can further enhance dipole and interfacial polarization.

15.
Endocrine ; 2024 Jul 31.
Article in English | MEDLINE | ID: mdl-39083171

ABSTRACT

PURPOSE: Our purpose was to investigate and test the causal relationship between type 1 diabetes (T1D) and inflammatory bowel disease (IBD) and its major phenotypes, including ulcerative colitis (UC) and Crohn's disease (CD), in two large datasets. METHODS: We obtained IBD samples from the largest publicly available genome-wide association study (GWAS), as well as the FinnGen database and the publicly accessible IEU GWAS database of T1D. We employed a two-sample Mendelian randomization approach to assess bidirectional causality using the inverse variance weighting (IVW) method as the primary outcome. RESULTS: Genetic predisposition to T1D was associated with reduced risk of IBD (IVW: odds ratio (OR), 0.867; 95% confidence interval (CI), [0.852, 0.883]; P < 0.001), UC (OR = 0.879 [0.823, 0.939], P < 0.001), and CD (OR = 0.925 [0.872, 0.981], P = 0.009). The republication results found IBD genetically possessed negative association with T1D (OR = 0.781 [0.684, 0.891], P < 0.001). Additionally, a meta-analysis of results was conducted to prove the strong evidence between T1D and CD (OR = 0.95 [0.91, 0.98]; p = 0.01). CONCLUSIONS: This study first demonstrated a causal effect of TID on the reduced risk of CD in the mendelian randomization study.

16.
Int J Biol Macromol ; 277(Pt 1): 133899, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39019361

ABSTRACT

In the process of sepsis, excessive occurrence of pyroptosis, a form of programmed cell death acting as a defense mechanism against pathogens, can disrupt immune responses, thus leading to tissue damage and organ dysfunction. Chitosan oligosaccharide (COS), derived from chitosan degradation, has demonstrated diverse beneficial effects. However, its impact on sepsis-induced pyroptosis remains unexplored. In the present study, ATP/LPS was utilized to induce canonical-pyroptosis in THP-1 cells, while bacterial outer membrane vesicles (OMV) were employed to trigger non-canonical pyroptosis in RAW264.7 cells. Our results revealed a dose-dependent effect of COS on both types of pyroptosis. This was evidenced by a reduction in the expression of pro-inflammatory cytokines, as well as crucial regulatory proteins involved in pyroptosis. In addition, COS inhibited the cleavage of caspase-1 and GSDMD, and reduced ASC oligomerization. The underlying mechanism revealed that COS acts an antioxidant, reducing the release of pyroptosis-induced ROS and malondialdehyde (MDA) by upregulation the expression and promoting the nuclear translocation of nuclear factor erythroid-2-related factor 2 (Nrf2), which led to an elevation of glutathione peroxidase 4 (GPX4) and superoxide dismutase (SOD). Notably, the actions of COS were completely reversed by the Nrf2 inhibitor. Consequently, COS intervention increased the survival rate of sepsis.


Subject(s)
Chitosan , Macrophages , NF-E2-Related Factor 2 , Oligosaccharides , Pyroptosis , Sepsis , Signal Transduction , Animals , Chitosan/pharmacology , Chitosan/chemistry , NF-E2-Related Factor 2/metabolism , Pyroptosis/drug effects , Mice , Oligosaccharides/pharmacology , Oligosaccharides/chemistry , Sepsis/metabolism , Sepsis/drug therapy , RAW 264.7 Cells , Macrophages/metabolism , Macrophages/drug effects , Humans , Signal Transduction/drug effects , Glutathione Peroxidase/metabolism , Male , THP-1 Cells , Reactive Oxygen Species/metabolism , Phospholipid Hydroperoxide Glutathione Peroxidase
17.
J Hematol Oncol ; 17(1): 47, 2024 Jun 18.
Article in English | MEDLINE | ID: mdl-38890756

ABSTRACT

BACKGROUND: Esophageal cancer (EC) is a highly lethal disease lacking early detection approaches. We previously identified that OTOP2 and KCNA3 were specifically hypermethylated in circulating cell-free DNA from patients with EC. We then developed a blood-based methylation assay targeting OTOP2 and KCNA3 (named "IEsohunter") for esophageal cancer noninvasive detection. This double-blinded, multicenter, prospective study aimed to comprehensively evaluate its clinical diagnostic performance. METHODS: Participants with EC, high-grade intraepithelial neoplasia (HGIN), other malignancies, benign gastrointestinal lesions, or no abnormalities were prospectively enrolled from 5 tertiary referral centers across China. Peripheral blood samples were collected, followed by plasma cell-free DNA methylation analysis using the IEsohunter test based on multiplex quantitative polymerase chain reaction adopting an algorithm-free interpretation strategy. The primary outcome was the diagnostic accuracy of IEsohunter test for EC. RESULTS: We prospectively enrolled 1116 participants, including 334 patients with EC, 71 with HGIN, and 711 controls. The areas under the receiver operating characteristic curves of the IEsohunter test for detecting EC and HGIN were 0.903 (95% CI 0.880-0.927) and 0.727 (95% CI 0.653-0.801), respectively. IEsohunter test showed sensitivities of 78.5% (95% CI 69.1-85.6), 87.3% (95% CI 79.4-92.4), 92.5% (95% CI 85.9-96.2), and 96.9% (95% CI 84.3-99.8) for stage I-IV EC, respectively, with an overall sensitivity of 87.4% (95% CI 83.4-90.6) and specificity of 93.3% (95% CI 91.2-94.9) for EC detection. The IEsohunter test status turned negative (100.0%, 47/47) after surgical resection of EC. CONCLUSIONS: The IEsohunter test showed high diagnostic accuracy for EC detection, indicating that it could potentially serve as a tool for noninvasive early detection and surveillance of EC.


Subject(s)
DNA Methylation , Esophageal Neoplasms , Adult , Aged , Female , Humans , Male , Middle Aged , Biomarkers, Tumor/genetics , Biomarkers, Tumor/blood , Cell-Free Nucleic Acids/blood , Double-Blind Method , Esophageal Neoplasms/diagnosis , Esophageal Neoplasms/genetics , Esophageal Neoplasms/blood , Prospective Studies
18.
Dig Liver Dis ; 2024 Jun 18.
Article in English | MEDLINE | ID: mdl-38890059

ABSTRACT

BACKGROUNDS: The efficacy of endoscopic submucosal dissection (ESD) to treat poorly differentiated superficial esophageal squamous cell carcinoma (SESCC) is unclear. AIMS: To exploring the efficacy and prognosis of ESD treatment poorly differentiated SESCC compared with esophagectomy. METHODS: A retrospective cohort study was conducted, the data of poorly differentiated SESCC patients who received ESD or esophagectomy from Jan 2011 to Jan 2021 were analyzed. Overall survival (OS), disease-specific survival (DSS), recurrence-free survival (RFS), and procedure-related variables were compared between ESD and esophagectomy group. RESULTS: 95 patients underwent ESD, while 86 underwent esophagectomy. No significant differences were found between the two groups in OS (P = 0.587), DSS (P = 0.172), and RFS (P = 0.111). Oncologic outcomes were also similar between the two groups in propensity score-matched analysis. For T1a ESCC, the rates of R0 resection, LVI or nodal metastasis and additional therapy were similar between ESD and esophagectomy groups. But for T1b ESCC, the rates of positive resection margin and additional therapy were significantly higher in ESD group than those in esophagectomy group. CONCLUSIONS: ESD is a minimally invasive procedure that has comparable oncologic outcomes with esophagectomy for treatment poorly differentiated T1a ESCC. However, ESD is not suitable for poorly differentiated T1b ESCC, additional surgery or radiochemotherapy should be required.

19.
ACS Appl Mater Interfaces ; 16(27): 35179-35189, 2024 Jul 10.
Article in English | MEDLINE | ID: mdl-38917344

ABSTRACT

Na3V2(PO4)2F3 (NVPF) is emerging as a popular cathode for sodium-ion batteries owing to its stable structure, high operating voltage, and large energy density. However, its practical application is hindered by its low conductivity. In addition, due to the loss of fluorine during synthesis, Na3V2(PO4)3 (NVP) impurity is often easily generated, resulting in a decrease in actual operating voltage. Herein, a bifunctional carbon network composed of an N-doped carbon layer and carbon bridge is constructed around NVPF particles. Through pyrolysis of polydopamine (PDA), the NVPF particles are covered in situ by an N-doped carbon layer, and the carbon bridge generated by polytetrafluoroethylene (PTFE) is also coated with N-doped carbon. Besides, PTFE also serves as a fluorine supplement to ensure that pure NVPF is obtained. As a result, the bifunctional N-doped carbon network-modified NVPF delivers a high reversible capacity (125.7 mA h g-1 at 0.2 C) and appreciable cycle stability (92.7% at 1 C over 300 cycles, and 89.8% at 10 C over 1500 cycles). When assembled into a full cell with a commercial hard carbon anode, it displays a discharge median voltage of up to 3.62 V at 0.2 C. Furthermore, it achieves a high energy density of 373.7 W h kg-1 at a power density of 461.2 W kg-1, with an excellent specific energy retention of 78.2% after 200 cycles. Therefore, this modification method is expected to be extended to other fluorine-containing materials with poor electrical conductivity.

20.
Acta Chim Slov ; 71(2): 304-311, 2024 May 22.
Article in English | MEDLINE | ID: mdl-38919098

ABSTRACT

Three new copper(II) complexes, [CuClL] (1), [CuBrL]n (2) and [CuL(NCS)]n (3), derived from the Schiff base 2,4-dichloro-6-((2-pyrrolidin-1-ylethylimino)methyl)phenol (HL) have been prepared and characterized by spectroscopy methods, as well as single crystal X-ray determination. The Cu atom in complex 1 is in square planar coordination, and those in complexes 2 and 3 are in square pyramidal coordination. The Schiff base ligand coordinates to the Cu atoms through phenolate oxygen, imino nitrogen and pyrrolidine nitrogen. The antibacterial activities of the Schiff base and the three copper complexes have been assayed on the bacteria Staphylococcus aureus and Escherichia coli, and the yeast Candida parapsilosis.

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