Novel annual nitrogen management strategy improves crop yield and reduces greenhouse gas emissions in wheat-maize rotation systems under limited irrigation.

Excessive irrigation and nitrogen application have long seriously undermined agricultural sustainability in the North China Plain (NCP), leading to declining groundwater tables and intensified greenhouse gas (GHG) emissions. Developing low-input management practices that meet the growing food demand while reducing environmental costs is urgently needed. Here, we developed a novel nitrogen management strategy for a typical winter wheat-summer maize rotation system in the NCP under limited irrigation (wheat sowing irrigation only (W0) or sowing and jointing irrigation (W1)) and low nitrogen input (360 kg N ha-1, about 70 % of traditional annual nitrogen input). Novel nitrogen management strategy promoted efficient nitrogen fertilizer uptake and utilization by both crops via optimization of nitrogen fertilizer allocation between the two crops, i.e., increasing nitrogen inputs to wheat (from 180 to 240 kg N ha-1) while reducing nitrogen inputs to maize (from 180 to 120 kg N ha-1). Three-year field study demonstrated that integrated management practices combining novel nitrogen management strategy with limited irrigation increased annual yields and PFPN by 1.9-5.7 %, and reduced TGE by 55-68 kg CO2-eq ha-1 and GHGI by 2.2-10.3 %, without any additional cost. Our results provide agricultural operators and policymakers with practical and easy-to-scalable integrated management strategy, and offer key initiative to promote grain production in the NCP towards agriculture sustainable intensification with high productivity and efficiency, water conservation and emission reduction.

Phenotypic and transcriptome profiling of spikes reveals the regulation of light regimens on spike growth and fertile floret number in wheat.

The spike growth phase is critical for the establishment of fertile floret (grain) numbers in wheat (Triticum aestivum L.). Then, how to shorten the spike growth phase and increase grain number synergistically? Here, we showed high-resolution analyses of floret primordia (FP) number, morphology and spike transcriptomes during the spike growth phase under three light regimens. The development of all FP in a spike could be divided into four distinct stages: differentiation (Stage I), differentiation and morphology development concurrently (Stage II), morphology development (Stage III), and polarization (Stage IV). Compared to the short photoperiod, the long photoperiod shortened spike growth and stimulated early flowering by shortening Stage III; however, this reduced assimilate accumulation, resulting in fertile floret loss. Interestingly, long photoperiod supplemented with red light shortened the time required to complete Stages I-II, then raised assimilates supply in the spike and promoted anther development before polarization initiation, thereby increasing fertile FP number during Stage III, and finally maintained fertile FP development during Stage IV until they became fertile florets via a predicted dynamic gene network. Our findings proposed a light regimen, critical stages and candidate regulators that achieved a shorter spike growth phase and a higher fertile floret number in wheat.

Low sucrose availability reduces basal spikelet fertility by inducing abscisic acid and jasmonic acid synthesis in wheat.

Within a spike of wheat, the central spikelets usually generate three to four fertile florets, while the basal spikelets generate zero to one fertile floret. The physiological and transcriptional mechanism behind the difference in fertility between the basal and central spikelets is unclear. This study reports a high temporal resolution investigation of transcriptomes, number and morphology of floret primordia, and physiological traits. The W6.5-W7.5 stage was regarded as the boundary to distinguish between fertile and abortive floret primordia; those floret primordia reaching the W6.5-W7.5 stage during the differentiation phase (3-9 d after terminal spikelet stage) usually developed into fertile florets in the next dimorphism phase (12-27 d after terminal spikelet stage), whereas the others aborted. The central spikelets had a greater number of fertile florets than the basal spikelets, which was associated with more floret primordia reaching the W6.5-W7.5 stage. Physiological and transcriptional results demonstrated that the central spikelets had a higher sucrose content and lower abscisic acid (ABA) and jasmonic acid (JA) accumulation than the basal spikelets due to down-regulation of genes involved in ABA and JA synthesis. Collectively, we propose a model in which ABA and JA accumulation is induced under limiting sucrose availability (basal spikelet) through the up-regulation of genes involved in ABA and JA synthesis; this leads to floret primordia in the basal spikelets failing to reach their fertile potential (W6.5-W7.5 stage) during the differentiation phase and then aborting. This fertility repression model may also regulate spikelet fertility in other cereal crops and potentially provides genetic resources to improve spikelet fertility.

Phosphorus-solubilizing bacteria improve the growth of Nicotiana benthamiana on lunar regolith simulant by dissociating insoluble inorganic phosphorus.

In-situ utilization of lunar soil resources will effectively improve the self-sufficiency of bioregenerative life support systems for future lunar bases. Therefore, we have explored the microbiological method to transform lunar soil into a substrate for plant cultivation. In this study, five species of phosphorus-solubilizing bacteria are used as test strains, and a 21-day bio-improving experiment with another 24-day Nicotiana benthamiana cultivation experiment are carried out on lunar regolith simulant. We have observed that the phosphorus-solublizing bacteria Bacillus mucilaginosus, Bacillus megaterium, and Pseudomonas fluorescens can tolerate the lunar regolith simulant conditions and dissociate the insoluble phosphorus from the regolith simulant. The phosphorus-solubilizing bacteria treatment improves the available phosphorus content of the regolith simulant, promoting the growth of Nicotiana benthamiana. Here we demonstrate that the phosphorus-solubilizing bacteria can effectively improve the fertility of lunar regolith simulant, making it a good cultivation substrate for higher plants. The results can lay a technical foundation for plant cultivation based on lunar regolith resources in future lunar bases.

Association between host nitrogen absorption and root-associated microbial community in field-grown wheat.

Plant roots and rhizosphere soils assemble diverse microbial communities, and these root-associated microbiomes profoundly influence host development. Modern wheat has given rise to numerous cultivars for its wide range of ecological adaptations and commercial uses. Variations in nitrogen uptake by different wheat cultivars are widely observed in production practices. However, little is known about the composition and structure of the root-associated microbiota in different wheat cultivars, and it is not sure whether root-associated microbial communities are relevant in host nitrogen absorption. Therefore, there is an urgent need for systematic assessment of root-associated microbial communities and their association with host nitrogen absorption in field-grown wheat. Here, we investigated the root-associated microbial community composition, structure, and keystone taxa in wheat cultivars with different nitrogen absorption characteristics at different stages and their relationships with edaphic variables and host nitrogen uptake. Our results indicated that cultivar nitrogen absorption characteristics strongly interacted with bacterial and archaeal communities in the roots and edaphic physicochemical factors. The impact of host cultivar identity, developmental stage, and spatial niche on bacterial and archaeal community structure and network complexity increased progressively from rhizosphere soils to roots. The root microbial community had a significant direct effect on plant nitrogen absorption, while plant nitrogen absorption and soil temperature also significantly influenced root microbial community structure. The cultivar with higher nitrogen absorption at the jointing stage tended to cooperate with root microbial community to facilitate their own nitrogen absorption. Our work provides important information for further wheat microbiome manipulation to influence host nitrogen absorption. KEY POINTS: • Wheat cultivar and developmental stage affected microbiome structure and network. • The root microbial community strongly interacted with plant nitrogen absorption. • High nitrogen absorption cultivar tended to cooperate with root microbiome.

Dynamic gene regulatory networks improving spike fertility through regulation of floret primordia fate in wheat.

The developmental process of spike is critical for spike fertility through affecting floret primordia fate in wheat; however, the genetic regulation of this dynamic and complex developmental process remains unclear. Here, we conducted a high temporal-resolution analysis of spike transcriptomes and monitored the number and morphology of floret primordia within spike. The development of all floret primordia in a spike was clearly separated into three distinct phases: differentiation, pre-dimorphism and dimorphism. Notably, we identified that floret primordia with meiosis ability at the pre-dimorphism phase usually develop into fertile floret primordia in the next dimorphism phase. Compared to control, increasing plant space treatment achieved the maximum increasement range (i.e., 50%) in number of fertile florets by accelerating spike development. The process of spike fertility improvement was directed by a continuous and dynamic regulatory network involved in transcription factor and genes interaction. This was based on the coordination of genes related to heat shock protein and jasmonic acid biosynthesis during differentiation phase, and genes related to lignin, anthocyanin and chlorophyll biosynthesis during dimorphism phase. The multi-dimensional association with high temporal-resolution approach reported here allows rapid identification of genetic resource for future breeding studies to realise the maximum spike fertility potential in more cereal crops.

Predicting micronutrients of wheat using hyperspectral imaging.

Micronutrients are the key factors to evaluate the nutritional quality of wheat. However, measuring micronutrients is time-consuming and expensive. In this study, the potential of hyperspectral imaging for predicting wheat micronutrient content was investigated. The spectral reflectance of wheat kernels and flour was acquired in the visible and near-infrared range (VIS-NIR, 375-1050 nm). Afterwards, wheat micronutrient contents were measured and their associations with the spectra were modeled. Results showed that the models based on the spectral reflectance of wheat kernel achieved good predictions for Ca, Mg, Mo and Zn (r2>0.70). The models based on the spectra reflectance of wheat flour showed good predictive capabilities for Mg, Mo and Zn (r2>0.60). The prediction accuracy was higher for wheat kernels than for the flour. This study showed the feasibility of hyperspectral imaging as a non-invasive, non-destructive tool to predict micronutrients of wheat.

Suppressed ABA signal transduction in the spike promotes sucrose use in the stem and reduces grain number in wheat under water stress.

Water stress is a primary trigger for reducing grain number per spike in wheat during the reproductive period. However, under stress conditions, the responses of plant organs and the interactions between them at the molecular and physiological levels remain unclear. In this study, when water stress occurred at the young microspore stage, RNA-seq data indicated that the spike had 970 differentially expressed genes, while the stem, comprising the two internodes below the spike (TIS), had 382. Abscisic acid (ABA) signal transduction genes were down-regulated by water stress in both these tissues, although to a greater extent in the TIS than in the spike. A reduction in sucrose was observed, and was accompanied by increases in cell wall invertase (CWIN) and sucrose:sucrose 1-fructosyl-transferase (1-SST) activities. Hexose and fructan were increased in the TIS but decreased in the spike. ABA was increased in the spike and TIS, and showed significant positive correlation with CWIN and 1-SST activities in the TIS. Overall, our results suggest that water stress induces the conversion of sucrose to hexose by CWIN, and to fructan by 1-SST, due to increased down-regulation of ABA signal transduction related-genes in the TIS; this leads to deficient sucrose supply to the spike and a decrease in grain number.

Biochar altered native soil organic carbon by changing soil aggregate size distribution and native SOC in aggregates based on an 8-year field experiment.

Soil aggregates play an important function in soil carbon sequestration because larger aggregates have higher soil organic carbon contents. A field experiment was set up in 2009 that included four treatments, i.e., B0, B30, B60, and B90 representing biochar application rates of 0, 30, 60, and 90 t ha-1, respectively. In 2017, we investigated the soil aggregate distribution, biochar and n-SOC contents in soil and different aggregate sizes using the ignition method, as well as the contribution of wheat and maize residues to n-SOC content in each aggregate by isotopic analysis. The results showed that, relative to B0, the n-SOC content presented an 14.0% decrease in B30, compared with an 18.8% and 8.2% increase in B60 and B90 (p < 0.05), respectively. Furthermore, the decreased n-SOC content in B30 was due to the decreased proportions of < 53 µm and 1000-250 µm aggregates. The increased n-SOC content in B60 was due to the significantly enhanced proportion of 2000-1000 µm and 1000-250 µm aggregates because the n-SOC contents of these two aggregates size classes were not changed by biochar. However, in B90, the increased n-SOC content was ascribed to the enhanced proportions of 2000-1000 µm and < 53 µm aggregates, although the n-SOC content in 2000-1000 µm aggregate was significantly decreased by biochar. Further analysis showed that the decreased n-SOC content in 2000-1000 µm aggregates was associated with decreased wheat-derived n-SOC content. In synthesis, our study showed a long-term effect of biochar on the n-SOC content by mainly changing soil aggregation and native organic carbon derived from wheat residue, and this effect was dependent on the applied amount. The biochar rate of 60 t ha-1 is recommended for carbon sequestration in terms of the more pronounced negative priming of native SOC, while the feasible combination between other biochars and soils needs further clarification.

Does soil amendment alter reactive soil N dynamics following chloropicrin fumigation?

Chloropicrin fumigation had strong inhibitory effect on soil N cycling. Knowledge gap existed about the performance of reactive N in soil applied with different amendments used to improve the fumigation function or soil quality. In this study, we employed four amendments, i.e., wheat straw residue, manure, biochar and ammonium thiosulfate, incorporated into soil at the regular application rate. Simultaneously, bare soil was selected as control (CK). Based on a three months incubation assay, soil reactive N and activity of three enzymes governing N-mineralization was measured, i.e., protease, arylamidase and l-glutaminase, as well the soil fluorescein diacetate (FDA) hydrolysis, basal soil respiration, and dissolved soil organic carbon (DOC). Result showed that, compared with the bare soil, the addition of straw or manure to soil markedly enhanced the FDA and the resistance of arylamidase and l-glutaminase to the fumigation, while significantly decreased the concentration of DON, NH4+N and NO3--N. The addition of biochar to soil had no effect on the reactive N, but contrasting effects on the three enzymes, i.e., suppressed protease activity, and enhanced arylamidase activity. The ammonium thiosulfate showed an inert effect on the measured microbiological indices and reactive N except the enhanced concentration of NH4+N. DOC content of amendments governed microbial activity under fumigation condition. In synthesis, our findings suggested that under chloropicrin fumigation the use of straw or manure enhanced the microbial abundance and the activity of N-mineralization enzymes, which may lead to low reactive N by the microbial N immobilization for a longer period.

Contrasting effects of biochar on N2O emission and N uptake at different N fertilizer levels on a temperate sandy loam.

Biochar has been frequently suggested as an amendment to improve soil quality and mitigate climate change. To investigate the optimal management of nitrogen (N) fertilization, we examined the combined effect of biochar and N fertilizer on plant N uptake and N2O emissions in a cereal rotation system in a randomized two-factorial field experiment on a sandy loam soil in Brandenburg, Germany. The biochar treatment received 10Mgha-1 wood-derived biochar in September 2012. Four levels of N fertilizer, corresponding to 0, 50%, 100%, 130% of the recommended fertilizer level, were applied in winter wheat (Triticum aestivum L.)) and winter rye (Secale cereal L.) in 2013 and 2014 followed by the catch crop oil radish (Raphanus sativus L. var. oleiformis). Biomass and N uptake of winter wheat and winter rye were significantly affected by the level of N fertilizer but not by biochar. For N uptake of oil radish an interaction effect was observed for biochar and N fertilizer. Without applied fertilizer, 39% higher N uptake was found in the presence of biochar, accompanied by higher soil NH4+ content and elevated cumulative CO2 emissions. At 130% of the recommended fertilizer level, 16% lower N uptake and lower cumulative N2O emissions were found in the biochar-mediated treatment. No significant change in abundance of microbial groups and nosZ gene were observed. Our results highlight that biochar can have a greenhouse gas mitigation effect at high levels of N supply and may stimulate nutrient uptake when no N is supplied.