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1.
Entropy (Basel) ; 25(4)2023 Mar 29.
Article in English | MEDLINE | ID: mdl-37190372

ABSTRACT

Recent success stories in reinforcement learning have demonstrated that leveraging structural properties of the underlying environment is key in devising viable methods capable of solving complex tasks. We study off-policy learning in discounted reinforcement learning, where some equivalence relation in the environment exists. We introduce a new model-free algorithm, called QL-ES (Q-learning with equivalence structure), which is a variant of (asynchronous) Q-learning tailored to exploit the equivalence structure in the MDP. We report a non-asymptotic PAC-type sample complexity bound for QL-ES, thereby establishing its sample efficiency. This bound also allows us to quantify the superiority of QL-ES over Q-learning analytically, which shows that the theoretical gain in some domains can be massive. We report extensive numerical experiments demonstrating that QL-ES converges significantly faster than (structure-oblivious) Q-learning empirically. They imply that the empirical performance gain obtained by exploiting the equivalence structure could be massive, even in simple domains. To the best of our knowledge, QL-ES is the first provably efficient model-free algorithm to exploit the equivalence structure in finite MDPs.

2.
PLoS One ; 18(4): e0284387, 2023.
Article in English | MEDLINE | ID: mdl-37071622

ABSTRACT

Several studies have addressed motor coordination in dance, but few have addressed the influence of musical context on micro-timing during sensorimotor synchronization (SMS) in classical ballet. In this study, we analyze the Promenade in Arabesque of the Odile variations, first as a dance-music fragment non-embedded in a musical context, then as a dance-music fragment embedded in a musical context at two different instances. Given the musical structure of the fragments, there are repeats of patterns between and within the fragments. Four dancers were invited to perform the three fragments in twelve successive performances. The beats of the music were extracted and compared with the timing of the dancers' heel movements, using circular-linear smooth regression modelling, and circular statistics. The results reveal an effect of repeat within fragments, and an effect of musical context between fragments, on micro-timing anticipation in SMS. The methodology offers a framework for future work on dynamical aspects of SMS.


Subject(s)
Dancing , Music , Movement
3.
Sleep Sci ; 15(3): 356-362, 2022.
Article in English | MEDLINE | ID: mdl-36158717

ABSTRACT

Objectives: Military personnel are unique occupational groups who happen to frequently experience sleep insuffciencies. Since sleep disorders are known to be linked to many psychiatric symptoms, sleep disturbance is a salient concern among active duty service members and veterans. Existing evidence indicates that although sleep disturbances co-occur with mental illnesses, there is a tendency to particularly label them as consequences of certain mental health issues. Material and Methods: This review focuses on the emerging evidence which identifies sleep disturbances as a precursor for mental illnesses. In this regard, the impact of sleep disturbance on the development of mental health outcomes including post-traumatic stress disorder (PTSD), depression, and anxiety has been thoroughly scrutinized. A systematic search was conducted using PubMed, Scopus, and Web of Science academic databases using appropriate keywords. Results: Reviewed evidence substantiates the predicting role of sleep complaints and disorders to herald PTSD, depression, and anxiety among military staff. Conclusion: Early diagnosis of sleep disturbances and properly addressing them in active-duty service members and veterans should be then sought to prevent the development and progression of consequent mental health- related comorbidities in this study group.

4.
Sleep Sci ; 15(2): 216-223, 2022.
Article in English | MEDLINE | ID: mdl-35755902

ABSTRACT

Objectives: This investigation aimed to compare caffeinated gums with two different dosages of caffeine (200mg vs. 300mg) by assessing their effectiveness on the improvement of cognitive functions among Iranian individuals voluntarily suffering from 30 hours of sleep deprivation. Material and Methods: Thirty-four healthy male volunteers with ages from 28 to 35 years old were randomly assigned to either 200 or 300mg caffeine intake. Each participant completed CANTAB subtests to assess their core cognitive functions including MOT, RTI, RVP, and SWM before and after sleep deprivation, as well as after being treated with caffeinated gum. Results: The 300mg caffeine intake group indicated higher levels of enhancement of core cognitive functions compared with those in the 200mg caffeine intake group. Conclusion: This study suggests that the dose of 300mg of caffeine could effectively enhance the cognitive functions of Iranian individuals suffering from sleep deprivation.

5.
Am Surg ; 88(1): 98-102, 2022 Jan.
Article in English | MEDLINE | ID: mdl-33371715

ABSTRACT

INTRODUCTION: The present study was attempted to evaluate the effect of perianal infiltration of tramadol on postoperative pain in patients undergoing hemorrhoidectomy. METHOD: This double-blind clinical trial study was carried out on 90 patients with grade 3 and 4 hemorrhoids undergoing hemorrhoidectomy. Patients were randomly assigned into 3 groups of control or bupivacaine or tramadol. Before the surgery, perianal infiltration of .25% bupivacaine or tramadol or normal saline was prescribed to each group, respectively. Data on pain severity (based on the visual analog scale (VAS), the duration of surgery, sedation score, pain at the first defecation, first request time for additional analgesia, nausea and vomiting, and analgesic intakes) were evaluated and analyzed. RESULTS: Duration of surgery was almost similar in all 3 groups (P = .974). The results showed a significant difference in pain score between 3 groups (P ≤.05) at all times after the surgery. In addition, the means of sedation scores (P = .03), pain score at the first defecation (P = .001), the time to first analgesic request (P = .001), and ketorolac administration times (P = .01) were significantly different between 3 groups. Finally, no complication was reported regarding postoperative nausea and vomiting. CONCLUSION: Given the notable efficacy of tramadol in reducing pain after hemorrhoidectomy and its minor side effects, this medication is suggested as an effective topical anesthetic to decrease pain after hemorrhoidectomy.


Subject(s)
Analgesics, Opioid/administration & dosage , Anesthetics, Local/administration & dosage , Bupivacaine/administration & dosage , Hemorrhoidectomy/adverse effects , Pain, Postoperative/drug therapy , Tramadol/administration & dosage , Adult , Aged , Anesthesia, Local/methods , Anti-Inflammatory Agents, Non-Steroidal/administration & dosage , Defecation , Double-Blind Method , Humans , Ketorolac/administration & dosage , Middle Aged , Nausea/etiology , Operative Time , Pain Measurement
6.
J Chromatogr A ; 1604: 460495, 2019 Oct 25.
Article in English | MEDLINE | ID: mdl-31492466

ABSTRACT

Growing concern over the environmental and health impacts of per- and polyfluoroalkyl substances (PFASs) has led to the development of increasingly stringent regulatory guidelines. To meet these guidelines for the determination of PFASs in surface-water, solid-phase extraction (SPE) is commonly implemented for clean-up and pre-concentration of samples. In this paper a micro-SPE method for the clean-up and pre-concentration of PFASs from surface-water was developed. A micro-SPE packing phase was created to retain 13 long and short chain PFAS after examining combinations of four 3 µm particle size sorbents, with the optimal phase consisting of a 50:50 mixture of C18 and aminopropyl silica. Micro-SPE achieved similar results to conventional SPE methods while reducing sample preparation time to 5 min and using only 2 mL of sample. The method was validated using spiked recoveries (100 ng L-1) from PFAS contaminated surface-water samples with recoveries ranging from 86% to 111% and relative standard deviations below 18%. Concentrations of the PFASs in the samples ranged from below the limit of quantification to 898 ± 15 ng L-1. Automation of sample preparation, including the micro-SPE extraction, was also demonstrated. These results show the potential for automated micro-SPE to replace conventional SPE, with the decreases in sample preparation time, sample and solvent volumes crucial for incorporation into routine analyses in commercial laboratories.


Subject(s)
Fluorocarbons/analysis , Solid Phase Microextraction/methods , Water Pollutants, Chemical/analysis , Limit of Detection , Reference Standards , Reproducibility of Results , Solvents
7.
J Dent (Shiraz) ; 20(2): 113-117, 2019 Jun.
Article in English | MEDLINE | ID: mdl-31214639

ABSTRACT

STATEMENT OF THE PROBLEM: Nonsuicidal self-inflicted injuries are socially unacceptable and may cause mild to severe damages. PURPOSE: This study aimed to evaluate the demographic features of the subjects with orodental self-injuries referred to a forensic medicine center in Shiraz, Iran. MATERIALS AND METHOD: This cross-sectional study evaluated 51 participants (49 men and 2 women) with orodental injuries referred to forensic medicine administration. Orodental self-injury was detected in the subjects, based on the last forensic criterion of self-injuries, considering their history, clinical examinations, and panoramic radiographs. RESULTS: The findings of this study revealed that dental self-injuries were more prevalent among married men from urban areas with secondary education levels. Most of the cases were due to the monetary compensation received. In the majority of cases, a hard object was used for this self-injury. Moreover, no statistical association was observed between the economic status and orodental self-injury. CONCLUSION: This study concluded that dental self-injury could be regarded as an unplanned incident because no significant correlation was observed between the participants, their economic status, and the type of dental trauma. Furthermore, detailed investigations on the latent variables are required.

8.
Electrophoresis ; 40(18-19): 2415-2419, 2019 09.
Article in English | MEDLINE | ID: mdl-30953374

ABSTRACT

The hydrophobic subtraction model (HSM) combined with quantitative structure-retention relationships (QSRR) methodology was utilized to predict retention times in reversed-phase liquid chromatography (RPLC). A selection of new analytes and new RPLC columns that had never been used in the QSRR modeling process were used to verify the proposed approach. This work is designed to facilitate early prediction of co-elution of analytes in pharmaceutical drug discovery applications where it is advantageous to predict whether impurities might be co-eluted with the active drug component. The QSRR models were constructed through partial least squares regression combined with a genetic algorithm (GA-PLS) which was employed as a feature selection method to choose the most informative molecular descriptors calculated using VolSurf+ software. The analyte hydrophobicity coefficient of the HSM was predicted for subsequent calculation of retention. Clustering approaches based on the local compound type and the local second dominant interaction were investigated to select the most appropriate training set of analytes from a larger database. Predicted retention times of five new compounds on five new RPLC C18 columns were compared with their measured retention times with percentage root-mean-square errors of 15.4 and 24.7 for the local compound type and local second dominant interaction clustering methods, respectively.


Subject(s)
Chromatography, Reverse-Phase/methods , Models, Chemical , Chromatography, High Pressure Liquid , Cluster Analysis , Hydrophobic and Hydrophilic Interactions , Quantitative Structure-Activity Relationship , Software
9.
Anal Chem ; 90(15): 9434-9440, 2018 08 07.
Article in English | MEDLINE | ID: mdl-29952550

ABSTRACT

Structure identification in nontargeted metabolomics based on liquid-chromatography coupled to mass spectrometry (LC-MS) remains a significant challenge. Quantitative structure-retention relationship (QSRR) modeling is a technique capable of accelerating the structure identification of metabolites by predicting their retention, allowing false positives to be eliminated during the interpretation of metabolomics data. In this work, 191 compounds were grouped according to molecular weight and a QSRR study was carried out on the 34 resulting groups to eliminate false positives. Partial least squares (PLS) regression combined with a Genetic algorithm (GA) was applied to construct the linear QSRR models based on a variety of VolSurf+ molecular descriptors. A novel dual-filtering approach, which combines Tanimoto similarity (TS) searching as the primary filter and retention index (RI) similarity clustering as the secondary filter, was utilized to select compounds in training sets to derive the QSRR models yielding R2 of 0.8512 and an average root mean square error in prediction (RMSEP) of 8.45%. With a retention index filter expressed as ±2 standard deviations (SD) of the error, representative compounds were predicted with >91% accuracy, and for 53% of the groups (18/34), at least one false positive compound could be eliminated. The proposed strategy can thus narrow down the number of false positives to be assessed in nontargeted metabolomics.


Subject(s)
Metabolomics/methods , Algorithms , Databases, Factual , Humans , Least-Squares Analysis , Linear Models , Models, Biological , Quantitative Structure-Activity Relationship
10.
Iran J Pharm Res ; 17(Suppl): 159-167, 2018.
Article in English | MEDLINE | ID: mdl-29796041

ABSTRACT

Medication interactions are associated with various unwanted adverse drug reactions. Medication Reconciliation involves a process in which a complete list of patient's previously prescribed medications are recorded and subsequently evaluated within the context of concomitantly prescribed medications and present medical condition during the hospitalization. Medical records of randomly selected 270 patients hospitalized in internal medicine, cardiovascular and infectious diseases wards were evaluated. Drug interactions were checked by LexiComp® database. Each interaction was assigned a risk rating of A, B, C, D, or X. The progression from A to X was based on increased urgency for responding to the data. Completed reconciliation forms were attached to patient charts for evaluation of physicians' compliance. Drug interactions were observed in 65.2% (176/270) of cases. The risk rating of interactions was categorized as C, D and X in 54.2%, 32.4%, and 13.4% of cases, respectively. There was a positive correlation between the number of prescribed medications and the rate of interactions (p-value < 0.001, Kendall's correlation coefficient = 0.487). Moreover, the length of hospitalization and the rate of drug interactions were significantly correlated (p-value < 0.001, Kendall's correlation coefficient = 0.350). Cardiovascular agents constituted the largest proportion of interactions (25%) followed by antibiotics (18%) and immunosuppressive agents (6%). In 59.6% of cases, no corrective action was taken by the physicians. Medication discrepancies occur commonly in hospital settings. Structured medication reconciliation may have a positive impact on prevention of medication errors.

11.
J Chromatogr A ; 1541: 1-11, 2018 Mar 16.
Article in English | MEDLINE | ID: mdl-29454529

ABSTRACT

Quantitative Structure-Retention Relationships (QSRR) methodology combined with the Hydrophobic Subtraction Model (HSM) have been utilized to accurately predict retention times for a selection of analytes on several different reversed phase liquid chromatography (RPLC) columns. This approach is designed to facilitate early prediction of co-elution of analytes, for example in pharmaceutical drug discovery applications where it is advantageous to predict whether impurities might be co-eluted with the active drug component. The QSRR model utilized VolSurf+ descriptors and a Partial Least Squares regression combined with a Genetic Algorithm (GA-PLS) to predict the solute coefficients in the HSM. It was found that only the hydrophobicity (η'H) term in the HSM was required to give the accuracy necessary to predict potential co-elution of analytes. Global QSRR models derived from all 148 compounds in the dataset were compared to QSRR models derived using a range of local modelling techniques based on clustering of compounds in the dataset by the structural similarity of compounds (as represented by the Tanimoto similarity index), physico-chemical similarity of compounds (represented by log D), the neutral, acidic, or basic nature of the compound, and the second dominant interaction between analyte and stationary phase after hydrophobicity. The global model showed reasonable prediction accuracy for retention time with errors of 30 s and less for up to 50% of modeled compounds. The local models for Tanimoto, nature of the compound and second dominant interaction approaches all exhibited prediction errors less than 30 s in retention time for nearly 70% of compounds for which models could be derived. Predicted retention times of five representative compounds on nine reversed-phase columns were compared with known experimental retention data for these columns and this comparison showed that the accuracy of the proposed modelling approach is sufficient to reliably predict the retention times of analytes based only on their chemical structures.


Subject(s)
Chemistry Techniques, Analytical/methods , Chromatography, High Pressure Liquid , Chromatography, Reverse-Phase , Models, Chemical , Hydrophobic and Hydrophilic Interactions , Least-Squares Analysis , Rho Guanine Nucleotide Exchange Factors , Solutions
12.
Anal Chim Acta ; 1000: 20-40, 2018 Feb 13.
Article in English | MEDLINE | ID: mdl-29289311

ABSTRACT

With an enormous growth in the application of hydrophilic interaction liquid chromatography (HILIC), there has also been significant progress in HILIC method development. HILIC is a chromatographic method that utilises hydro-organic mobile phases with a high organic content, and a hydrophilic stationary phase. It has been applied predominantly in the determination of small polar compounds. Theoretical studies in computer-aided modelling tools, most importantly the predictive, quantitative structure retention relationship (QSRR) modelling methods, have attracted the attention of researchers and these approaches greatly assist the method development process. This review focuses on the application of computer-aided modelling tools in understanding the retention mechanism, the classification of HILIC stationary phases, prediction of retention times in HILIC systems, optimisation of chromatographic conditions, and description of the interaction effects of the chromatographic factors in HILIC separations. Additionally, what has been achieved in the potential application of QSRR methodology in combination with experimental design philosophy in the optimisation of chromatographic separation conditions in the HILIC method development process is communicated. Developing robust predictive QSRR models will undoubtedly facilitate more application of this chromatographic mode in a broader variety of research areas, significantly minimising cost and time of the experimental work.


Subject(s)
Computer-Aided Design , Chromatography, Liquid , Hydrophobic and Hydrophilic Interactions , Models, Molecular , Quantitative Structure-Activity Relationship
13.
J Chem Inf Model ; 57(11): 2754-2762, 2017 11 27.
Article in English | MEDLINE | ID: mdl-29028323

ABSTRACT

Quantitative structure-retention relationship (QSRR) models are powerful techniques for the prediction of retention times of analytes, where chromatographic retention parameters are correlated with molecular descriptors encoding chemical structures of analytes. Many QSRR models contain geometrical descriptors derived from the three-dimensional (3D) spatial coordinates of computationally predicted structures for the analytes. Therefore, it is sensible to calculate these structures correctly, as any error is likely to carry over to the resulting QSRR models. This study compares molecular modeling, semiempirical, and density functional methods (both B3LYP and M06) for structure optimization. Each of the calculations was performed in a vacuum, then repeated with solvent corrections for both acetonitrile and water. We also compared Natural Bond Orbital analysis with the Mulliken charge calculation method. The comparison of the examined computational methods for structure calculation shows that, possibly due to the error inherent in descriptor creation methods, a quick and inexpensive molecular modeling method of structure determination gives similar results to experiments where structures are optimized using an expensive and time-consuming level of computational theory. Also, for structures with low flexibility, vacuum or gas phase calculations are found to be as effective as those calculations with solvent corrections added.


Subject(s)
Models, Molecular , Quantitative Structure-Activity Relationship , Benchmarking , Molecular Conformation , Quantum Theory
14.
J Chromatogr A ; 1524: 298-302, 2017 Nov 17.
Article in English | MEDLINE | ID: mdl-29037590

ABSTRACT

An analysis and comparison of the use of four commonly used error measures (mean absolute error, percentage mean absolute error, root mean square error, and percentage root mean square error) for evaluating the predictive ability of quantitative structure-retention relationships (QSRR) models is reported. These error measures are used for reporting errors in the prediction of retention time of external test analytes, that is, analytes not employed during model development. The error-based validation metrics were compared using a simple descriptive statistic, the sum of squared residuals (SSR) of outliers to the edge of an error window. The comparisons demonstrate that Percentage Root Mean Squared Error of Prediction (RMSEP) provides the best estimate of the predictive ability of a QSRR model, having the lowest SSR value of 20.43.


Subject(s)
Chemistry Techniques, Analytical/standards , Models, Chemical , Quantitative Structure-Activity Relationship
15.
J Chromatogr A ; 1520: 107-116, 2017 Oct 20.
Article in English | MEDLINE | ID: mdl-28916393

ABSTRACT

Retention prediction for unknown compounds based on Quantitative Structure-Retention Relationships (QSRR) can lead to rapid "scoping" method development in chromatography by simplifying the selection of chromatographic parameters. The use of retention factor ratio (or k-ratio) as a chromatographic similarity index can be a potent method to cluster similar compounds into a training set to generate an accurate predictive QSRR model provided that its limitation - that the method is impractical for retention prediction for unknown compounds - is successfully addressed. In this work, we propose a localised QSRR modelling approach with the aim of compensating the critical limitation in the otherwise successful k-ratio filter-based QSRR modelling. The approach is to combine a k-ratio filter with both Tanimoto similarity (TS) and a ΔlogP index (i.e., logP-Dual filter). QSRR models for two retention parameters (a and b) in the linear solvent strength (LSS) model in ion chromatography (IC), logk=a - blog[eluent], were generated for larger organic cations (molecular mass up to 506) on a Thermo Fisher Scientific CS17 column. The application of the developed logP-Dual filter resulted in the production of successful QSRR models for 50 organic cations out of 87 in the dataset. The predicted a- and b-values of the models were then applied to the LSS model to predict the corresponding retention times. External validation showed that QSRR models for a-, b- and tR- values with excellent accuracy and predictability (Qext(F2)2 of 0.96, 0.95, and 0.96, RMSEP of 0.06, 0.02, and 0.38min) were created successfully, and these models can be employed to speed up the "scoping" phase of method development in IC.


Subject(s)
Chemistry Techniques, Analytical/methods , Chromatography, High Pressure Liquid , Models, Chemical , Quantitative Structure-Activity Relationship , Chemistry Techniques, Analytical/instrumentation , Chemistry Techniques, Analytical/standards , Linear Models , Molecular Weight , Reproducibility of Results , Solvents/chemistry
16.
Anal Chem ; 89(17): 8808-8815, 2017 09 05.
Article in English | MEDLINE | ID: mdl-28770992

ABSTRACT

A prerequisite for ordered two-dimensional (2D) separations and full utilization of the enhanced 2D peak capacity is selective exploitation of the sample attributes, described as sample dimensionality. In order to take sample dimensionality into account prior to optimization of a 2D separation, a new concept based on construction of 2D separation selectivity maps is proposed and demonstrated for ion chromatography × capillary electrophoresis (IC×CE) separation of low-molecular-mass organic acids as test analytes. For this purpose, 1D separation selectivity maps were constructed based on calculation of pairwise separation factors and identification of critical pairs for four IC stationary phases and 28 levels of background electrolyte pH in CE. The derived IC and CE maps were then superimposed and the effectiveness of the respective 2D separations assessed using an in silico approach, followed by testing examples of one successful and one unsuccessful 2D combination experimentally. The results confirmed the efficacy of the predictions, which require a minimal number of experiments compared to the traditional one-at-a-time approach. Following the same principles, the proposed framework can also be adapted for optimization of separation selectivity in various 2D combinations and for other applications.

17.
J Chromatogr A ; 1507: 53-62, 2017 Jul 21.
Article in English | MEDLINE | ID: mdl-28587779

ABSTRACT

The development of quantitative structure retention relationships (QSRR) having sufficient accuracy to support high performance liquid chromatography (HPLC) method development is still a major issue. To tackle this challenge, this study presents a novel QSRR methodology to select a training set of compounds for QSRR modelling (i.e. to filter the database to identify the most appropriate compounds for the training set). This selection is based on a dual filtering strategy which combines Tanimoto similarity (TS) searching as the primary filter and retention time (tR) similarity clustering as the secondary filter, using a database of pharmaceutical compound retention times collected over a wide range of hydrophilic interaction liquid chromatography (HILIC) systems. To employ tR similarity filtering, correlation to a molecular descriptor is used as a measure of retention time. For the retention time of a compound to be modelled a relationship between experimental chromatographic data and various molecular descriptors is calculated using a genetic algorithm-partial least squares (GA-PLS) regression. The proposed dual-filtering-based QSRR model significantly improves the retention time predictability compared to the diverse, global, and TS-based QSRR models, with an average root mean square error in prediction (RMSEP) of 11.01% over five different HILIC stationary phases. The average CPU time for implementing the proposed approach is less than 10min, which makes it quite favorable for rapid method development in HILIC. In addition, interpretation of the molecular descriptors selected by this novel approach provided some insight into the HILIC mechanism.


Subject(s)
Chromatography, High Pressure Liquid/instrumentation , Hydrophobic and Hydrophilic Interactions , Least-Squares Analysis , Models, Theoretical , Quantitative Structure-Activity Relationship
18.
J Chromatogr A ; 1523: 173-182, 2017 Nov 10.
Article in English | MEDLINE | ID: mdl-28291517

ABSTRACT

Quantitative Structure-Retention Relationships (QSRR) are used to predict retention times of compounds based only on their chemical structures encoded by molecular descriptors. The main concern in QSRR modelling is to build models with high predictive power, allowing reliable retention prediction for the unknown compounds across the chromatographic space. With the aim of enhancing the prediction power of the models, in this work, our previously proposed QSRR modelling approach called "federation of local models" is extended in ion chromatography to predict retention times of unknown ions, where a local model for each target ion (unknown) is created using only structurally similar ions from the dataset. A Tanimoto similarity (TS) score was utilised as a measure of structural similarity and training sets were developed by including ions that were similar to the target ion, as defined by a threshold value. The prediction of retention parameters (a- and b-values) in the linear solvent strength (LSS) model in ion chromatography, log k=a - blog[eluent], allows the prediction of retention times under all eluent concentrations. The QSRR models for a- and b-values were developed by a genetic algorithm-partial least squares method using the retention data of inorganic and small organic anions and larger organic cations (molecular mass up to 507) on four Thermo Fisher Scientific columns (AS20, AS19, AS11HC and CS17). The corresponding predicted retention times were calculated by fitting the predicted a- and b-values of the models into the LSS model equation. The predicted retention times were also plotted against the experimental values to evaluate the goodness of fit and the predictive power of the models. The application of a TS threshold of 0.6 was found to successfully produce predictive and reliable QSRR models (Qext(F2)2>0.8 and Mean Absolute Error<0.1), and hence accurate retention time predictions with an average Mean Absolute Error of 0.2min.


Subject(s)
Algorithms , Chromatography/methods , Models, Theoretical , Anions , Bleeding Time , Least-Squares Analysis , Linear Models , Molecular Weight , Quantitative Structure-Activity Relationship , Solvents/chemistry
19.
Anal Chem ; 89(3): 1870-1878, 2017 02 07.
Article in English | MEDLINE | ID: mdl-28208251

ABSTRACT

A design-of-experiment (DoE) model was developed, able to describe the retention times of a mixture of pharmaceutical compounds in hydrophilic interaction liquid chromatography (HILIC) under all possible combinations of acetonitrile content, salt concentration, and mobile-phase pH with R2 > 0.95. Further, a quantitative structure-retention relationship (QSRR) model was developed to predict retention times for new analytes, based only on their chemical structures, with a root-mean-square error of prediction (RMSEP) as low as 0.81%. A compound classification based on the concept of similarity was applied prior to QSRR modeling. Finally, we utilized a combined QSRR-DoE approach to propose an optimal design space in a quality-by-design (QbD) workflow to facilitate the HILIC method development. The mathematical QSRR-DoE model was shown to be highly predictive when applied to an independent test set of unseen compounds in unseen conditions with a RMSEP value of 5.83%. The QSRR-DoE computed retention time of pharmaceutical test analytes and subsequently calculated separation selectivity was used to optimize the chromatographic conditions for efficient separation of targets. A Monte Carlo simulation was performed to evaluate the risk of uncertainty in the model's prediction, and to define the design space where the desired quality criterion was met. Experimental realization of peak selectivity between targets under the selected optimal working conditions confirmed the theoretical predictions. These results demonstrate how discovery of optimal conditions for the separation of new analytes can be accelerated by the use of appropriate theoretical tools.


Subject(s)
Chromatography, High Pressure Liquid/methods , Pharmaceutical Preparations/analysis , Quantitative Structure-Activity Relationship , Algorithms , Cluster Analysis , Hydrophobic and Hydrophilic Interactions , Models, Chemical , Molecular Structure , Reproducibility of Results , Research Design
20.
J Chromatogr A ; 1486: 59-67, 2017 Feb 24.
Article in English | MEDLINE | ID: mdl-28049585

ABSTRACT

Quantitative structure-retention relationship (QSRR) models are developed to predict the retention times of analytes on five hydrophilic interaction liquid chromatography (HILIC) stationary phases (bare silica, amine, amide, diol and zwitterionic), with a view to selecting the most suitable stationary phase(s) for the separation of these analytes. The study was conducted using six ß-adrenergic agonists as target analytes. Molecular descriptors were calculated based only on chemical structures optimized using density functional theory. A genetic algorithm (GA) was then used to select the most relevant molecular descriptors and these were used to build a retention model for each stationary phase using partial least squares (PLS) regression. This model was then used to predict the retention of the test set of target analytes. This process created an optimized descriptor set which enhanced the reliability of the developed QSRR models. Finally, the QSRR models developed in the work were utilized to provide some insight into the separation mechanisms operating in the HILIC mode. Three performance criteria - mean absolute error (MAE), root mean square error of prediction scaled to retention time (RMSEP), and the number of selected descriptors, were used to evaluate the developed models when applied to an external test set of six ß-adrenergic agonists and showed highly predictive abilities. MAE values ranged from 13 to 25s on four of the stationary phases, with a somewhat higher error (50s) being observed for the zwitterionic phase. RMSEP values of 4.88-11.12% were recorded. Validation was performed through Y-randomization and chemical domain applicability, from which it was evident that the developed optimized GA-PLS models were robust. The high levels of accuracy, reliability and applicability of the models were to a large extent due to the optimization of the GA descriptor set and the presence of relevant structural and geometric molecular descriptors, together with descriptors based on important physicochemical properties, which establish a strong connection between retention time and meaningful chemical properties. The present strategy, while it is a pilot study, holds great promise for broader screening of HILIC stationary phases for desired separation, as well as for acquisition of information about molecular mechanisms of separation under chromatographic conditions.


Subject(s)
Adrenergic beta-Agonists/chemistry , Adrenergic beta-Agonists/isolation & purification , Chromatography, Liquid/methods , Hydrophobic and Hydrophilic Interactions , Models, Chemical , Algorithms , Amides/chemistry , Amines/chemistry , Least-Squares Analysis , Pilot Projects , Quantitative Structure-Activity Relationship , Quantum Theory , Reproducibility of Results , Silicon Dioxide/chemistry , Solutions
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