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1.
Biosci Biotechnol Biochem ; 88(8): 932-940, 2024 Jul 22.
Article in English | MEDLINE | ID: mdl-38760880

ABSTRACT

A 3-dimensional culture system of keratinocytes achieves cornification as a terminal differentiation that can mimic the formation of stratified epidermis. At the onset of keratinocyte differentiation, air-exposure treatment is essential for promotion. We have previously reported that the stimulation of differentiation is accompanied by downregulation of the transcriptional activity of the hypoxia-inducible factor (HIF) and also found that rocking treatment of cultured keratinocytes in the submerged condition restored their differentiation. A comparative study of cultured keratinocytes with and without rocking was then carried out to investigate the characteristics of the recovered differentiation by morphological and biochemical analyses. In addition, transcriptome analysis revealed the expected similar pattern between air-exposed and rocking cultures, including HIF-regulating transcripts. Furthermore, the promotive effect of rocking treatment was impaired under hypoxic culture conditions (1% O2). We showed that the restored promotion of differentiation by rocking culture is mainly due to the abrogation of transcriptional events by hypoxia.


Subject(s)
Cell Differentiation , Epidermis , Keratinocytes , Keratinocytes/cytology , Keratinocytes/metabolism , Humans , Epidermis/metabolism , Cell Hypoxia , Cells, Cultured , Epidermal Cells/cytology , Epidermal Cells/metabolism , Cell Culture Techniques, Three Dimensional/methods , Gene Expression Profiling , Cell Culture Techniques/methods
2.
FEBS J ; 290(8): 2049-2063, 2023 04.
Article in English | MEDLINE | ID: mdl-36549886

ABSTRACT

Formation of the human skin epidermis can be reproduced by a three-dimensional (3D) keratinocyte culture system, in which air-exposure is inevitable upon initiation of differentiation. In the continuous submerged culture without air-exposure, even with a differentiation-compatible medium, several keratinocyte-specific proteins were not induced resulting in the formation of aberrant epidermal layers. To clarify the mechanism by which air-exposure promotes keratinocyte differentiation, we performed a comparative analysis on biological properties between submerged and air-liquid interphase culture systems. By transcriptomic analysis, hypoxia-inducible factor (HIF)-related genes appeared to significantly change in these cultured cells. In submerged culture, the transcriptional activity of HIF on its canonical response element was enhanced, while air-exposure treatment drastically reduced the transcriptional activity despite the high HIF protein level. Regulating HIF activity through reagents and genetic manipulation revealed that the reduced but retained HIF-transcriptional activity was essentially involved in differentiation. Furthermore, we showed, for the first time, that artificial supplementation of oxygen in the submerged culture system could restore keratinocyte differentiation as observed in the air-exposed culture. Thus, we mechanistically evaluated how HIF regulates the air-exposure-dependent differentiation of keratinocytes in a 3D culture system.


Subject(s)
Epidermal Cells , Keratinocytes , Humans , Keratinocytes/metabolism , Epidermis , Cell Differentiation/genetics , Cells, Cultured , Hypoxia/metabolism
3.
Arch Biochem Biophys ; 711: 109003, 2021 10 30.
Article in English | MEDLINE | ID: mdl-34390735

ABSTRACT

During fetal development, the barrier function of the fetal skin is developed under specific conditions for epidermis formation. In keratinocyte differentiation, the well-orchestrated production and modification of various structural proteins are induced. We assessed the epidermal barrier function in different fetal stages by evaluating the enzymatic activity of cross-linking proteins, transglutaminases, and the permeation of fluorescence dye in the stained epidermal sections. During days 15.5-17.5 in gestation, the enzymatic activities in the epidermis appeared to increase significantly; meanwhile, dye permeation was substantially decreased, suggesting the formation of a protective barrier. For the fetal epidermis formation in the earlier stage, unclarified stimulating factors in the amniotic fluid (AF) are possible to promote barrier function by stimulating keratinocyte differentiation. Thus, we performed proteomic spectrometric (MS) analysis on the components in the AF at different fetal stages. Also, we investigated the promotive ability of the components using a cultured keratinocyte differentiation system. According to the MS analysis, the AF components appeared to exhibit stage-specific variations, where possible unique functions have been identified. We also found that adding the AF from each stage to the medium for cultured keratinocytes specifically enhanced the levels of the differentiation markers. These results provide information on the possible role of AF that contains regulatory factors on keratinocyte differentiation.


Subject(s)
Amniotic Fluid/metabolism , Cell Differentiation , Keratinocytes/cytology , Animals , Cells, Cultured , Epidermal Cells/metabolism , Epidermis/embryology , Epidermis/metabolism , Fetus , Mice, Inbred ICR , Transglutaminases/metabolism
4.
Anal Biochem ; 603: 113606, 2020 08 15.
Article in English | MEDLINE | ID: mdl-32004543

ABSTRACT

The skin epidermis functions as a barrier to various external stresses. In the outermost layer, the terminally differentiated keratinocytes result in cornification with a tough structure by formation of a cornified envelope beneath the plasma membrane. To complete the formation of the cornified envelope, several structural proteins are cross-linked via the catalytic action of transglutaminases (TG1, TG3, TG5, and TG6). The expression and activation of these enzymes are regulated in a tightly coordinated manner during keratinocyte differentiation. We here show the system detecting the activity of the TGases using specific glutamine-donor substrate peptides in a three-dimensional culture system of keratinocytes. In this review, we summarize the roles of the epidermal enzymes and introduce a detection method that will provide a system for evaluating the skin barrier function.


Subject(s)
Epidermis/enzymology , Keratinocytes/cytology , Keratinocytes/enzymology , Transglutaminases/metabolism , Cell Culture Techniques , Cell Differentiation , Humans , Keratinocytes/metabolism , Peptides/metabolism , Transglutaminases/physiology
5.
FEBS J ; 286(13): 2536-2548, 2019 07.
Article in English | MEDLINE | ID: mdl-30941897

ABSTRACT

During skin formation, particularly during differentiation of keratinocytes, unique post-translational modifications play a role in forming a proteinaceous supermolecule called the cornified envelope (CE), which is necessary for barrier function. Transglutaminases (TGs) are essential enzymes involved in the cross-linking of various keratinocyte structural proteins to complete CE formation. The TG family consists of eight isozymes, with two members, TG1 and TG3, located mainly in the epidermis. In an in vitro three-dimensional (3D) culture system, reconstruction of the epidermis allows cornification of the terminally differentiated keratinocytes. In this study, using isozyme-specific substrate peptides that enable detection of TG activity, we investigated the expression and the activation pattern of each isozyme during differentiation in this culture system. In the differentiating cells, the protein levels, enzymatic activities, as well as localization of TG1 and TG3 exhibited distinct patterns. Specific knockdown of these enzymes by siRNA revealed less cornification, suggesting that each TG contributes to the epidermal formation. In conclusion, we demonstrate the efficiency of the 3D system for studying differentiation-dependent expression and activity of distinct TGs by specific substrate peptides. ENZYME: Transglutaminase, EC2.3.2.13.


Subject(s)
Cell Differentiation , Epidermis/metabolism , Keratinocytes/cytology , Transglutaminases/genetics , Cells, Cultured , Humans , Isoenzymes/genetics , Isoenzymes/metabolism , Keratinocytes/metabolism , Peptides/metabolism , Primary Cell Culture , Transglutaminases/metabolism
6.
Gan To Kagaku Ryoho ; 39(11): 1733-5, 2012 Nov.
Article in English | MEDLINE | ID: mdl-23152030

ABSTRACT

We report the case of a 66-year-old man with primary diffuse large B-cell lymphoma of the prostate presenting with urinary retention and dyschezia as first manifestation. Although a colostomy was needed due to rectal obstruction, rituximab-combined chemotherapy resulted in complete remission. He underwent stoma closure safely and has remained in complete remission for over 3years. Primary prostatic lymphoma is extremely rare, presenting as 0.1% of newly diagnosed lymphomas, but rituximab-containing chemotherapy seems to be as effective as for nodal lymphoma.


Subject(s)
Antibodies, Monoclonal, Murine-Derived/therapeutic use , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Constipation/etiology , Lymphoma, Large B-Cell, Diffuse/drug therapy , Prostate/pathology , Rectal Neoplasms/drug therapy , Urinary Retention/etiology , Aged , Antibodies, Monoclonal, Murine-Derived/administration & dosage , Combined Modality Therapy , Cyclophosphamide/therapeutic use , Doxorubicin/therapeutic use , Humans , Lymphoma, Large B-Cell, Diffuse/complications , Lymphoma, Large B-Cell, Diffuse/pathology , Lymphoma, Large B-Cell, Diffuse/surgery , Male , Prednisone/therapeutic use , Rectal Neoplasms/complications , Rectal Neoplasms/pathology , Rectal Neoplasms/surgery , Remission Induction , Rituximab , Vincristine/therapeutic use
7.
Rinsho Ketsueki ; 53(6): 618-22, 2012 Jun.
Article in Japanese | MEDLINE | ID: mdl-22790637

ABSTRACT

A 61-year-old man was referred to our hospital for leukocytosis and thrombocytopenia. Bone marrow examination showed hypercellular bone marrow accompanied by dysplasia, and the karyotype of his bone marrow cells was 46,XY, der(5;12)(q10;q10), +mar,inc[3]/46,XY[12]. A diagnosis of myelodysplastic syndrome, unclassifiable, was made. Analysis of major BCR/ABL1 chimeric RNA by real-time polymerase chain reaction method was positive, and then Ph chromosome was observed afterward. His Ph chromosome was seen in der(5;12)-negative cells analyzed by FISH, which suggested the late-appearing Ph chromosome evolved into another clone. Despite treatment containing imatinib, hydroxyurea, and cytosine arabinoside, he died due to respiratory dysfunction 5 months after the initial diagnosis. The autopsy revealed massive pulmonary infiltration by Ph-negative cells, suggesting MDS-derived clones. It has been reported that the late appearance of Ph chromosome associates with leukemic progression. Although the incidence of late-appearing Ph chromosome is estimated to be relatively low, further accumulation of cases is necessary for the evaluation of its impact on prognosis and disease progression.


Subject(s)
Bone Marrow/pathology , Chromosomes, Human, Pair 12/genetics , Chromosomes, Human, Pair 5/genetics , Myelodysplastic Syndromes/genetics , Philadelphia Chromosome , Chromosome Aberrations , Humans , Male , Middle Aged , Myelodysplastic Syndromes/diagnosis
8.
Gan To Kagaku Ryoho ; 39(4): 625-7, 2012 Apr.
Article in Japanese | MEDLINE | ID: mdl-22504689

ABSTRACT

We present three long-term survivors treated with high-dose melphalan with autologous peripheral blood stem cell transplantation(auto PBSCT)for primary AL amyloidosis. Because melphalan toxicity is dose-related, patient age and the extent of organ involvement are very important factors for the success of high-dose melphalan treatment with PBSCT. The patients were therefore given high-dose melphalan using the risk-adapted approach to melphalan dosing. They received 3 courses of a vincristine, doxorubicin and dexamethasone(VAD)regimen, along with high-dose melphalan(100-200mg/m2)with auto PBSCT. There were no serious complications or transplantation-related mortalities. Patients survived for an average of 68 months(22-100 months)in partial response. A risk-adapted approach to melphalan dosing with PBSCT is an effective treatment in patients with primary AL amyloidosis.


Subject(s)
Amyloidosis/drug therapy , Melphalan/therapeutic use , Peripheral Blood Stem Cell Transplantation , Amyloidosis/pathology , Amyloidosis/surgery , Biopsy , Combined Modality Therapy , Female , Humans , Immunoglobulin Light-chain Amyloidosis , Male , Melphalan/administration & dosage , Middle Aged
9.
Intern Med ; 51(3): 315-9, 2012.
Article in English | MEDLINE | ID: mdl-22293810

ABSTRACT

We report the case of a 17-year-old man with precursor B-lymphoblastic lymphoma involving an intracardiac mass and myocardial infiltration. Intensified chemotherapy followed by autologous peripheral blood stem cell transplantation resulted in long-term complete remission for over 5 years. As the most frequent sites of B-lymphoblastic lymphoma involvement are the skin, soft tissue, bone, and lymph nodes, reports of cases harboring cardiac involvement are relatively few. This is a rare case of B-lymphoblastic lymphoma displaying cardiac involvement, in which cardiac infiltration was one of the initial manifestations.


Subject(s)
Heart Neoplasms/diagnosis , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/diagnosis , Adolescent , Heart Neoplasms/complications , Heart Neoplasms/therapy , Humans , Male , Myocardium/pathology , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/complications , Precursor B-Cell Lymphoblastic Leukemia-Lymphoma/therapy
10.
Haematologica ; 97(6): 903-6, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22180435

ABSTRACT

It was recently recognized that some chronic myeloid leukemia patients with a complete molecular response could sustain that response after discontinuation of imatinib. To characterize the clinical outcomes and profiles of chronic phase chronic myeloid leukemia patients who could discontinue imatinib, we conducted a nationwide survey in Japan. Among 3,242 imatinib-treated chronic myeloid leukemia patients, we identified 50 who had discontinued imatinib for at least six months; of these we analyzed 43. Molecular recurrence was detected in 19 patients, and a complete molecular response rate was estimated to be 47% following imatinib discontinuation. Based on multivariate regression analysis, imatinib dose intensity and prior interferon-α administration were independently predictive of molecular recurrence within 12 months. The depth of the molecular response should be a factor influencing long-term sustained complete molecular response after discontinuation of imatinib. Additionally, an immunological mechanism modified by interferon-α might control chronic myeloid leukemia stem cells.


Subject(s)
Antineoplastic Agents/therapeutic use , Interferon-alpha/therapeutic use , Leukemia, Myeloid, Chronic-Phase/drug therapy , Neoplastic Stem Cells/drug effects , Piperazines/therapeutic use , Pyrimidines/therapeutic use , Adolescent , Adult , Aged , Aged, 80 and over , Antineoplastic Agents/administration & dosage , Benzamides , Disease-Free Survival , Drug Administration Schedule , Female , Humans , Imatinib Mesylate , Immunity, Innate , Interferon-alpha/administration & dosage , Japan , Leukemia, Myeloid, Chronic-Phase/immunology , Leukemia, Myeloid, Chronic-Phase/mortality , Longitudinal Studies , Male , Middle Aged , Multivariate Analysis , Neoplastic Stem Cells/immunology , Piperazines/administration & dosage , Pyrimidines/administration & dosage , Recurrence , Treatment Outcome
12.
Leuk Res Treatment ; 2011: 592519, 2011.
Article in English | MEDLINE | ID: mdl-23213545

ABSTRACT

The t(9;22)(q34;q11) translocation is found in about 90% of chronic myeloid leukemia (CML) patients. About 5-10% of CML patients have complex variant translocations involving a third chromosome in addition to chromosomes 9 and 22. Herein, we describe a CML-chronic phase male with a complex translocation involving chromosome 16, t(9;22;16)(q34;q11;q24). First, he was treated with interferon-alpha and intermittent hydroxyurea, but only a partial cytogenetic response was attained. Subsequently, the patient was treated with imatinib mesylate because of an additional chromosome abnormality, trisomy 8. A major molecular response was obtained after one year's imatinib therapy, and the follow-up chromosomal analysis performed 4 years and 3 months after the initiation of imatinib therapy displayed a normal karyotype of 46,XY.

15.
Arch Gerontol Geriatr ; 51(2): 209-15, 2010.
Article in English | MEDLINE | ID: mdl-19926148

ABSTRACT

CHOP (cyclophosphamide, adriamycin, vincristine, and prednisolone) plus rituximab is a standard chemotherapy used to treat patients with aggressive B-cell non-Hodgkin lymphoma (B-NHL). However, among elderly patients, this regimen has not been completely satisfactory in its efficacy and safety. We report our clinical experience in 8 collaborative institutions to determine if the VNCOP-B (etoposide, mitoxantrone, cyclophosphamide, vincristine, prednisolone, and bleomycin) combination therapy plus rituximab was effective and safe to treat elderly patients with aggressive B-NHL. Between September 2004 and December 2007, 23 previously untreated patients, median age 73 years, 50.0% classified as high-intermediate/high-risk on the standard International Prognostic Index (IPI) entered this trial. Complete remission rate was 90.5%, with a 100% overall response rate (RR) at the end of induction therapy; overall survival (OS) rate at 3 years was 76.4% (median follow-up 744 days), with an 82.6% 3-year progression-free survival (PFS) rate (median follow-up 744 days). The most common grade 3/4 toxicities were hematologic, including neutropenia in 75.0% of the patients despite prophylactic administration of granulocyte colony-stimulating factor (G-CSF), febrile neutropenia in 30.0%, respectively. There was no treatment-related mortality (TRM). Rituximab not only combined with chemotherapy but also given sequentially improved survival. R-VNCOP-B could be another option for elderly patients who are not considered to tolerate in receiving R-CHOP.


Subject(s)
Antibodies, Monoclonal, Murine-Derived/therapeutic use , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Lymphoma, B-Cell/drug therapy , Aged , Aged, 80 and over , Antibodies, Monoclonal, Murine-Derived/adverse effects , Antineoplastic Combined Chemotherapy Protocols/adverse effects , Bleomycin/adverse effects , Bleomycin/therapeutic use , Cyclophosphamide/adverse effects , Cyclophosphamide/therapeutic use , Etoposide/adverse effects , Etoposide/therapeutic use , Female , Granulocyte Colony-Stimulating Factor/therapeutic use , Humans , Lymphoma, B-Cell/mortality , Male , Mitoxantrone/adverse effects , Mitoxantrone/therapeutic use , Neutropenia/chemically induced , Prednisone/adverse effects , Prednisone/therapeutic use , Remission Induction , Rituximab , Vincristine/adverse effects , Vincristine/therapeutic use
16.
J Exp Clin Cancer Res ; 28: 116, 2009 Aug 19.
Article in English | MEDLINE | ID: mdl-19689822

ABSTRACT

BACKGROUND: Recently, maintaining higher relative dose intensity (RDI) of chemotherapeutic drugs has become a widespread practice in an attempt to achieve better outcomes in the treatment of aggressive lymphoma. The addition of rituximab to chemotherapy regimens has significantly improved outcome in diffuse large B-cell lymphoma (DLBL). However, it is unknown if higher RDI in chemotherapy when combined with rituximab leads to a better outcome in aggressive B-cell lymphoma. METHODS: We retrospectively evaluated the impact of the RDI of initial chemotherapy (consisting of cyclophosphamide, doxorubicin, vincristine and prednisolone with rituximab (R-CHOP) on outcome in 100 newly diagnosed DLBL patients. RESULTS: A multivariate Cox regression model showed that RDI trended towards a significant association with mortality [hazard ratio per 0.1 of RDI = 0.8; 95% confidence interval 0.6-1.0; P = 0.08]. Additionally, on multivariate logistic analysis, advanced age was a significant factor for reduced RDI. CONCLUSION: Our data suggest that in DLBL patients, mortality was affected by RDI of R-CHOP as the initial treatment, and the retention of a high RDI could therefore be crucial.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/administration & dosage , Lymphoma, Large B-Cell, Diffuse/drug therapy , Antibodies, Monoclonal/administration & dosage , Antibodies, Monoclonal, Murine-Derived , Cyclophosphamide , Disease-Free Survival , Dose-Response Relationship, Drug , Doxorubicin , Humans , Kaplan-Meier Estimate , Lymphoma, Large B-Cell, Diffuse/mortality , Middle Aged , Neoplasm Staging , Prednisolone , Retrospective Studies , Risk Factors , Rituximab , Treatment Outcome , Vincristine
17.
Gan To Kagaku Ryoho ; 33(2): 193-8, 2006 Feb.
Article in Japanese | MEDLINE | ID: mdl-16484855

ABSTRACT

High-dose chemotherapy followed by autologous peripheral blood transplantation (HD-APBSCT) is a therapeutic option for patients with non-Hodgkin's lymphoma (NHL) after complete remission (CR) as consolidation therapy. In this report we describe a retrospective study of such treatment. A total of 38 patients with NHL were treated between November 19 9 1 and March 2005. At five years,the rate of disease-free survival (DFS) and overall survival (OS) was 64.3% and 66.5%, respectively. Patients who underwent transplantation in first CR had a 5-year probability of disease-free survival of 71.6% compared with 35.7% for those who were in second CR at the time of transplantation (p=0.10). In a monovariate analysis, second CR status at the time of transplantation was a relatively adverse predictor of DFS. None of those factors containing surface markers were significantly associated with clinical variables such as the CR status at the time of transplantation. Thirty high intermediate risk and high risk patients with aggressive B-cell lymphoma had a better outcome than patients treated with standard chemotherapy. In this study, 8 patients with T-cell lymphoma had a 3-year DFS and OS of 87.5% and 87.5%, respectively. HDT-APBSCT is a candidate for consolidation therapy for high-intermediate risk and high risk patients with aggressive B-cell and T-cell lymphoma.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Hematopoietic Stem Cell Transplantation , Lymphoma, B-Cell/therapy , Lymphoma, T-Cell/therapy , Adolescent , Adult , Antineoplastic Combined Chemotherapy Protocols/administration & dosage , Combined Modality Therapy , Cyclophosphamide/administration & dosage , Cytarabine/administration & dosage , Disease-Free Survival , Dose-Response Relationship, Drug , Doxorubicin/administration & dosage , Drug Administration Schedule , Female , Humans , Lymphoma, B-Cell/drug therapy , Lymphoma, T-Cell/drug therapy , Male , Middle Aged , Prednisone/administration & dosage , Remission Induction , Retrospective Studies , Transplantation, Autologous , Treatment Outcome , Vincristine/administration & dosage
18.
Intern Med ; 45(1): 21-4, 2006.
Article in English | MEDLINE | ID: mdl-16467600

ABSTRACT

A case of subcutaneous panniculitis-like T-cell lymphoma (SPTCL) is reported. A 27-year-old man presented with fever and abdominal swelling. His laboratory examination revealed pancytopenia and liver dysfunction. The diagnosis of SPTCL was made by biopsy based on thickened subcutaneous tissue. In addition, bone marrow specimen showed a hemophagocytosis syndrome (HPS). Methylprednisolone pulse therapy was initiated followed by prednisolone (60 mg/day) and cyclosporin A (150 mg/day). He responded to the treatment and remained asymptomatic for at least for 6 months. Our results suggest that a trial of cyclosporin A is warranted in patients with SPTCL complicated by HPS.


Subject(s)
Antineoplastic Agents, Hormonal/administration & dosage , Cyclosporine/administration & dosage , Immunosuppressive Agents/administration & dosage , Lymphoma, T-Cell/drug therapy , Panniculitis/drug therapy , Prednisolone/administration & dosage , Adult , Drug Therapy, Combination , Humans , Lymphohistiocytosis, Hemophagocytic/complications , Lymphohistiocytosis, Hemophagocytic/drug therapy , Lymphoma, T-Cell/complications , Lymphoma, T-Cell/pathology , Male , Panniculitis/complications , Panniculitis/pathology , Remission Induction
19.
Cancer ; 104(5): 1022-31, 2005 Sep 01.
Article in English | MEDLINE | ID: mdl-15999368

ABSTRACT

BACKGROUND: Blastic natural killer (NK) cell lymphoma/leukemia (BNKL) is an immature CD56-positive neoplasm, which was recognized recently and characterized by systemic proliferation of tumor cells including skin, lymph node, and bone marrow. METHODS: The current study analyzed 47 patients with BNKL (27 had leukemias and 20 had lymphomas). Patient data were collected for the survey of the NK-Cell Tumor Study Group. RESULTS: There were 33 males and 14 females, with a median age of 53 years (range, 3 months to 89 years). There were few clinicopathologic differences between the leukemia and lymphoma types. Cutaneous involvement was noted at diagnosis in 28 patients, who presented a tendency for older age of onset (median: 56 vs. 46 years, P = 0.11) than patients with noncutaneous BNKL. Cutaneous BNKL showed less frequent mediastinal involvement (4% vs. 53%, P = 0.0002) and less severe thrombocytopenia (P =0 .03). Phenotypic characteristics were also different, with cutaneous BNKL favoring CD4 and HLA-DR expression, and noncutaneous BNKL favoring CD16 and CD34 expression. Both groups responded well to chemotherapy for lymphoid malignancies, but disease recurrence was frequent. The prognosis of patients with noncutaneous BNKL was significantly poorer than that of patients with cutaneous BNKL (median survival: 15 vs. 25 months, P = 0.02). Multivariate analysis confirmed that cutaneous involvement was a significant and independent prognostic factor for BNKL, as were age of onset and leukocyte count. CONCLUSIONS: These findings suggested that BNKL is a heterogeneous disease and contains at least two subtypes. Although further investigations are needed to settle a marker for distinction, the presence of cutaneous involvement is a useful prognostic factor.


Subject(s)
CD56 Antigen/analysis , Killer Cells, Natural/pathology , Leukemia, Lymphoid/mortality , Lymphoma, T-Cell/mortality , Adolescent , Adult , Aged , Aged, 80 and over , DNA Nucleotidylexotransferase/analysis , Female , Gene Rearrangement, T-Lymphocyte , Humans , Immunophenotyping , Interleukin-3 Receptor alpha Subunit , Karyotyping , Leukemia, Lymphoid/immunology , Leukemia, Lymphoid/therapy , Lymphoma, T-Cell/immunology , Lymphoma, T-Cell/therapy , Male , Middle Aged , Prognosis , Receptors, Interleukin-3/analysis , Skin Neoplasms/immunology , Skin Neoplasms/mortality , Skin Neoplasms/therapy
20.
Nucleic Acids Res ; 33(Web Server issue): W29-35, 2005 Jul 01.
Article in English | MEDLINE | ID: mdl-15980473

ABSTRACT

Diamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new functionalities by both providing more structure parameters to the STING Database and by improving/expanding the interface for enhanced data handling. The integration among the STING components has also been improved. A new key feature is the ability of the STING server to handle local files containing protein structures (either modeled or not yet deposited to the Protein Data Bank) so that they can be used by the principal STING components: (Java)Protein Dossier ((J)PD) and STING Report. The current capabilities of the new STING version and a couple of biologically relevant applications are described here. We have provided an example where Diamond STING identifies the active site amino acids and folding essential amino acids (both previously determined by experiments) by filtering out all but those residues by selecting the numerical values/ranges for a set of corresponding parameters. This is the fundamental step toward a more interesting endeavor-the prediction of such residues. Diamond STING is freely accessible at http://sms.cbi.cnptia.embrapa.br and http://trantor.bioc.columbia.edu/SMS.


Subject(s)
Databases, Protein , Proteins/chemistry , Software , Acid Anhydride Hydrolases/chemistry , Amino Acids/chemistry , Binding Sites , HIV Integrase/chemistry , Internet , Models, Molecular , Protein Conformation , Proteins/physiology , Sequence Analysis, Protein , Systems Integration , Acylphosphatase
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