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1.
Environ Toxicol ; 31(11): 1329-1336, 2016 Nov.
Article in English | MEDLINE | ID: mdl-25855086

ABSTRACT

Matrix metalloproteinases (MMPs) play a key role in cancer progression, including cell invasion, metastasis, cell growth, apoptosis, angiogenesis, and cell adhesion. Thus, suppression of the MMPs activities is crucial for inhibiting cancer cells metastasis. Herein, bioactive agents from crocodile (Crocodylus siamensis) leukocyte extracts (WBCex) showed the anticancer activity with HeLa cells and inhibited the migration and invasion process by reducing gelatinases (MMP-2, MMP-9) activity and their protein levels. This mechanism is regulated via interfering Ras and p38 signal transduction. Moreover, disrupting VEGF and integrin-signaling cascade by bioactive agents are the predictable mechanisms that cause the decreasing of MMP-2 and MMP-9 activity. Hence, bioactive substances in WBCex may play the mode of action similar with MMPs inhibitor due to HeLa cell metastasis being suppressed in vitro. © 2015 Wiley Periodicals, Inc. Environ Toxicol 31: 1329-1336, 2016.


Subject(s)
Alligators and Crocodiles/metabolism , Antineoplastic Agents/metabolism , Leukocytes/metabolism , Animals , Antineoplastic Agents/toxicity , Cell Movement/drug effects , Cell Survival/drug effects , HeLa Cells , Humans , Matrix Metalloproteinase 2/metabolism , Matrix Metalloproteinase 9/metabolism , Signal Transduction/drug effects , p38 Mitogen-Activated Protein Kinases/antagonists & inhibitors , p38 Mitogen-Activated Protein Kinases/metabolism , ras Proteins/antagonists & inhibitors , ras Proteins/metabolism
2.
Environ Toxicol ; 31(8): 986-97, 2016 Aug.
Article in English | MEDLINE | ID: mdl-25691005

ABSTRACT

Crocodile (Crocodylus siamensis) white blood cell extracts (WBCex) were examined for anticancer activity in HeLa cell lines using the MTT assay. The percentage viability of HeLa cells significantly deceased after treatment with WBCex in a dose- and time-dependent manner. The IC50 dose was suggested to be approximately 225 µg/mL protein. Apoptotic cell death occurred in a time-dependent manner based on investigation by flow cytometry using annexin V-FITC and PI staining. DAPI nucleic acid staining indicated increased chromatin condensation. Caspase-3, -8 and -9 activities also increased, suggesting the induction of the caspase-dependent apoptotic pathway. Furthermore, the mitochondrial membrane potential (ΔΨm ) of HeLa cells was lost as a result of increasing levels of Bax and reduced levels of Bcl-2, Bcl-XL, Bcl-Xs, and XIAP. The decreased ΔΨm led to the release of cytochrome c and the activation of caspase-9 and -3. Apoptosis-inducing factor translocated into the nuclei, and endonuclease G (Endo G) was released from the mitochondria. These results suggest that anticancer agents in WBCex can induce apoptosis in HeLa cells via both caspase-dependent and -independent pathways. © 2015 Wiley Periodicals, Inc. Environ Toxicol 31: 986-997, 2016.


Subject(s)
Alligators and Crocodiles , Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Leukocytes/chemistry , Animals , Cell Extracts/pharmacology , Cell Survival/drug effects , Drug Screening Assays, Antitumor , HeLa Cells , Humans , Membrane Potential, Mitochondrial/drug effects , Mitochondria/metabolism
3.
Protein J ; 33(5): 484-92, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25216803

ABSTRACT

Antioxidant and anti-inflammatory activities were found from Crocodylus siamensis (C. siamensis) blood. The 2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) (ABTS) radical scavenging, nitric oxide scavenging, hydroxyl radical scavenging and linoleic peroxidation assays were used to investigate the antioxidant activities of the crocodile blood. Results show that crocodile blood components had antioxidant activity, especially hemoglobin (40.58 % nitric oxide radical inhibition), crude leukocyte extract (78 % linoleic peroxidation inhibition) and plasma (57.27 % hydroxyl radical inhibition). Additionally, the anti-inflammatory activity of the crocodile blood was studied using murine macrophage (RAW 264.7) as a model. The results show that hemoglobin, crude leukocyte extract and plasma were not toxic to RAW 264.7 cells. Also they showed anti-inflammatory activity by reduced nitric oxide (NO) and interleukin 6 (IL-6) productions from lipopolysaccharide (LPS)-stimulated cells. The NO inhibition percentages of hemoglobin, crude leukocyte extract and plasma were 31.9, 48.24 and 44.27 %, respectively. However, only crude leukocyte extract could inhibit IL-6 production. So, the results of this research directly indicate that hemoglobin, crude leukocyte extract and plasma of C. siamensis blood provide both antioxidant and anti-inflammatory activities, which could be used as a supplementary agent in pharmaceutical products.


Subject(s)
Alligators and Crocodiles , Anti-Inflammatory Agents , Antioxidants , Cell Extracts/pharmacology , Hemoglobins/pharmacology , Animals , Anti-Inflammatory Agents/blood , Anti-Inflammatory Agents/pharmacology , Antioxidants/analysis , Antioxidants/pharmacology , Blood Physiological Phenomena , Cell Line , Cell Survival/drug effects , Cytokines/metabolism , Hemoglobins/chemistry , Hydroxyl Radical/metabolism , Lipid Peroxidation/drug effects , Mice , Nitric Oxide/metabolism , Plasma
4.
Protein Expr Purif ; 103: 56-63, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25175288

ABSTRACT

We have established a method to express soluble heme-bound recombinant crocodile (Crocodylus siamensis) α-globin chain holo-protein in bacteria (Escherichia coli) using an autoinduction system without addition of exogenous heme. This is the first time that heme-bound crocodile α-globin chains have been expressed in bacteria without in vitro heme reconstitution. The observed molecular mass of purified recombinant α-globin is consistent with that calculated from the primary amino acid sequence of native crocodile (C. siamensis) α-globin. Both the monomeric and the dimeric protein configuration formed by intermolecular disulfide bond could be purified as soluble protein. Spectroscopic characterization [UV-visible, circular dichroism (CD), and electron paramagnetic resonance (EPR)] of purified recombinant α-globin demonstrates nearly identical properties as reported for hemoglobin and myoglobin isolated from other organisms. For comparison, cyanide and nitric oxide binding of purified α-globin was also investigated. These results suggested that C. siamensis α-globin expressed in E. coli was folded correctly with proper incorporation of the heme cofactor. The expression method we now describe can facilitate production and isolation of individual globin chains in order to further study the mechanism and assembly of crocodile hemoglobin.


Subject(s)
Hemoglobins/chemistry , Hemoglobins/isolation & purification , alpha-Globins/chemistry , alpha-Globins/isolation & purification , Alligators and Crocodiles , Amino Acid Sequence , Animals , Circular Dichroism , Escherichia coli , Heme/chemistry , Hemoglobins/biosynthesis , Hemoglobins/genetics , Spectrum Analysis , alpha-Globins/biosynthesis , alpha-Globins/genetics
5.
Biochem Genet ; 52(11-12): 459-73, 2014 Dec.
Article in English | MEDLINE | ID: mdl-24980735

ABSTRACT

Heteroscorpine-1 (HS-1) was identified as a member of the scorpine family. HS-1 shows insecticidal activities, exhibiting a low median lethal dose (LD50) in mealworm (Tenebrio molitor L.) and inhibitory activities against Bacillus subtilis, Klebsiella pneumoniae, and Pseudomonas aeruginosa. In this study, a recombinant HS-1 (rHS-1) was produced by overexpression in E. coli. A large yield of product was obtained. The structure of purified rHS-1 was confirmed through mass spectrometry. Both anti-crude venom and anti-rHS-1 antibodies specifically recognized rHS-1, suggesting its structural similarity. Reactivated rHS-1 caused roughening and blebbing of bacterial cell surfaces. It showed higher activity than that of pre-refolded protein. Antisera raised against a partially purified and mis- or unfolded peptide can inhibit relevant bioactivity.


Subject(s)
Anti-Bacterial Agents/pharmacology , Antivenins , Scorpion Venoms/pharmacology , Animals , Antibodies, Neutralizing/immunology , Cross Reactions , Insecticides , Protein Refolding , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/pharmacology , Scorpion Venoms/genetics , Scorpion Venoms/immunology , Tenebrio
6.
Protein J ; 33(4): 377-85, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24928538

ABSTRACT

Crocodylus siamensis hemoglobin was purified by a size exclusion chromatography, Sephacryl S-100 with buffer containing dithiothreitol. The purified Hb was dissociated to be two forms (α chain and ß chain) which observed by SDS-PAGE, indicated that the C. siamensis Hb was an unpolymerized form. The unpolymerized Hb (composed of two α chains and two ß chains) showed high oxygen affinity at 3.13 mmHg (P(50)) and 1.96 (n value), and a small Bohr effect (δH(+) = -0.29) at a pH of 6.9-8.4. Adenosine triphosphate did not affect the oxygenation properties, whereas bicarbonate ions strongly depressed oxygen affinity. Crude C. siamensis Hb solutions were showed high O(2) affinity at P(50) of 2.5 mmHg which may assure efficient utilization of the lung O(2) reserve during breath holding and diving. The purified Hbs were changed to cyanmethemoglobin forms prior crystallization. Rod- and plate-shaped crystals were obtained by the sitting-drop vapor-diffusion method at 5 °C using equal volumes of protein solution (37 mg/ml) and reservoir [10-13 % (w/v) PEG 4000, with 0.1 M Tris buffer in present of 0.2 M MgCl(2)·6H(2)O] solution at a pH of 7.0-8.5.


Subject(s)
Alligators and Crocodiles/blood , Hemoglobins/chemistry , Hemoglobins/isolation & purification , Adenosine Triphosphate , Amino Acid Sequence , Animals , Bicarbonates , Crystallization , Hydrogen-Ion Concentration , Molecular Sequence Data , Polymerization , Protein Stability , Sequence Alignment
7.
J Antibiot (Tokyo) ; 67(3): 205-12, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24192554

ABSTRACT

Leucrocin I is an antibacterial peptide isolated from crocodile (Crocodylus siamensis) white blood cell extracts. Based on Leucrocin I sequence, cationic peptide, NY15, was designed, synthesized and evaluated for antibacterial activity against Bacillus sphaericus TISTR 678, Bacillus megaterium (clinical isolate), Vibrio cholerae (clinical isolate), Salmonella typhi (clinical isolate), Salmonella typhi ATCC 5784 and Escherichia coli 0157:H7. The efficacy of the peptide made from all L-amino acids was also compared with all D-amino acids. The peptide made from all D-amino acids was more active than the corresponding L-enantiomer. In our detailed study, the interaction between peptides and the cell membrane of Vibrio cholerae as part of their killing mechanism was studied by fluorescence and electron microscopy. The results show that the membrane was the target of action of the peptides. Finally, the cytotoxicity assays revealed that both L-NY15 and D-NY15 peptides are non-toxic to mammalian cells at bacteriolytic concentrations.


Subject(s)
Alligators and Crocodiles/blood , Anti-Bacterial Agents/pharmacology , Antimicrobial Cationic Peptides/pharmacology , Bacteria/drug effects , Amino Acid Sequence , Animals , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/toxicity , Antimicrobial Cationic Peptides/isolation & purification , Antimicrobial Cationic Peptides/toxicity , Cell Extracts , Cell Membrane/metabolism , Chlorocebus aethiops , Drug Design , Humans , Leukocytes/metabolism , Microscopy, Electron , Microscopy, Fluorescence , Stereoisomerism , Toxicity Tests , Vero Cells , Vibrio cholerae/drug effects
8.
Protein J ; 33(1): 24-31, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24374428

ABSTRACT

Antioxidant peptides were isolated from the leukocyte extract of the Siamese crocodile, Crocodylus siamensis. Crocodile leukocyte was extracted by a combination of methods including freeze-thawing, acetic acid extraction and homogenization. The peptides in the leukocyte extract were purified by anion exchange chromatography and reversed phase-high performance liquid chromatography. The 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging assay was used to evaluate the antioxidant activity of the elution peaks at each purification step. As a result, there were two purified peptides exhibiting strong antioxidant activity in reducing free radicals on DPPH molecules. The amino acid sequences of these peptides were determined by LC-MS/MS as TDVLGLPAK (912.5 Da) and DPNAALPAGPR (1,148.6 Da), and their IC50 values were 153.4 and 95.7 µM, respectively. The results of this study therefore indicate that leukocyte extract of C. siamensis contains peptides with antioxidant activity which could be used as a novel antioxidant.


Subject(s)
Alligators and Crocodiles , Antioxidants/chemistry , Oxidation-Reduction , Peptides/chemistry , Amino Acid Sequence , Animals , Antioxidants/isolation & purification , Biphenyl Compounds/chemistry , Free Radical Scavengers/chemistry , Leukocytes/chemistry , Peptides/isolation & purification , Picrates/chemistry , Tandem Mass Spectrometry , Tissue Extracts/chemistry
9.
Bioorg Med Chem Lett ; 23(16): 4657-62, 2013 Aug 15.
Article in English | MEDLINE | ID: mdl-23831136

ABSTRACT

The principle of amino acid stretches tagged at the C terminal of Luecrocin I, which is an ultra-short antibacterial peptide, by tryptophan and arginine or lysine has been reported. The choice of amino acid type at each stretch position depends on the hydrophobic and hydrophilic regions visualized in the helical wheel pattern of Luecrocin I. Oligopeptide tagging should also consider the properties such as positive charge, hydrophobicity, the content of hydrophobic amino acids, polar angle, the properly hydrophilic and hydrophobic facets. Amidation at C terminal and lysine substitute for arginine can increase selectivity between mammalian cells (hemolytic and MTT assay) and bacterial cells tested. KT2 and RT2 which have 53% hydrophobic residues, 7 positive charges, 160° polar angle, -0.02 (KT2) and -0.04 (RT2) hydrophobicity were effective against S. typhi DMST 22842, S. epidermidis ATCC 12228, E. coli ATCC 25922 and V. cholerae non-O1, non-O139. The SEM images implied that the antibacterial mechanism of RT2 and KT2 may depend on concentration rather than time. Finally, RT2 and KT2 can be new antibacterial agents or may be further developed for alternative antibiotics.


Subject(s)
Amino Acids/chemistry , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Drug Design , Peptides/chemistry , Peptides/pharmacology , Salmonella typhi/drug effects , Amino Acid Sequence , Microbial Sensitivity Tests , Microscopy, Electron, Scanning , Protein Structure, Secondary
10.
Appl Biochem Biotechnol ; 170(8): 2034-45, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23813341

ABSTRACT

A protease inhibitor protein with the molecular mass of 11,804.931 Da (analyzed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry) was isolated from Aloe vera leaf gel and designated as AVPI-12. The isoelectric point of the protein is about 7.43. The first ten amino acid sequence from the N-terminal was found to be R-D-W-A-E-P-N-D-G-Y, which did not match other protease inhibitors in database searches and other publications, indicating AVPI-12 is a novel protease inhibitor. The band protein of AVPI-12 migrated further on nonreducing sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) than reducing SDS-PAGE. This result indicated that the molecule of AVPI-12 did not contain interchain disulfide bonds, but appeared to have intrachain disulfide bonds instead. AVPI-12 strongly resisted digestion by the serine proteases human plasmin and bovine trypsin. The protein could protect the γ-subunit of human fibrinogen from plasmin and trypsin digestion, similar to the natural plasma serine protease inhibitor α2-macroglobulin. The protein also could protect the γ-subunit of fibrinogen from the cysteine protease papain. AVPI-12 also exhibited dose-dependent inhibition of the fibrinogenolytic activity of plasmin, similar to α2-macroglobulin. The fibrinolytic inhibitory activity of AVPI-12 and the small-angle X-ray scattering showed that the protein could protect human fibrin clot from complete degradation by plasmin. The inhibition of the fibrinogenolytic and fibrinolytic activities of plasmin by AVPI-12 suggests that the inhibitor has potential for use in antifibrinolytic treatment.


Subject(s)
Aloe/metabolism , Fibrinogen/chemistry , Fibrinolysin/chemistry , Plant Proteins/chemistry , Plant Proteins/metabolism , Protease Inhibitors/chemistry , Protease Inhibitors/metabolism , Plant Proteins/isolation & purification , Protease Inhibitors/isolation & purification , Protein Binding
11.
PLoS Negl Trop Dis ; 7(6): e2267, 2013.
Article in English | MEDLINE | ID: mdl-23785532

ABSTRACT

Burkholderia pseudomallei is a category B agent that causes Melioidosis, an acute and chronic disease with septicemia. The current treatment regimen is a heavy dose of antibiotics such as ceftazidime (CAZ); however, the risk of a relapse is possible. Peptide antibiotics are an alternative to classical antibiotics as they exhibit rapid action and are less likely to result in the development of resistance. The aim of this study was to determine the bactericidal activity against B. pseudomallei and examine the membrane disrupting abilities of the potent antimicrobial peptides: bactenecin, RTA3, BMAP-18 and CA-MA. All peptides exhibited >97% bactericidal activity at 20 µM, with bactenecin having slightly higher activity. Long term time-kill assays revealed a complete inhibition of cell growth at 50 µM bactenecin and CA-MA. All peptides inhibited biofilm formation comparable to CAZ, but exhibited faster kinetics (within 1 h). Bactenecin exhibited stronger binding to LPS and induced perturbation of the inner membrane of live cells. Interaction of bactenecin with model membranes resulted in changes in membrane fluidity and permeability, leading to leakage of dye across the membrane at levels two-fold greater than that of other peptides. Modeling of peptide binding on the membrane showed stable and deep insertion of bactenecin into the membrane (up to 9 Å). We propose that bactenecin is able to form dimers or large ß-sheet structures in a concentration dependent manner and subsequently rapidly permeabilize the membrane, leading to cytosolic leakage and cell death in a shorter period of time compared to CAZ. Bactenecin might be considered as a potent antimicrobial agent for use against B. pseudomallei.


Subject(s)
Anti-Bacterial Agents/pharmacology , Burkholderia pseudomallei/drug effects , Cell Membrane Permeability/drug effects , Cell Membrane/drug effects , Peptides, Cyclic/pharmacology , Burkholderia pseudomallei/physiology , Cell Membrane/physiology , Microbial Viability/drug effects
12.
Protein J ; 32(3): 172-82, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23463382

ABSTRACT

The first report of complete nucleotide sequences for α- and ß-globin chains from the Siamese hemoglobin (Crocodylus siamensis) is given in this study. The cDNAs encoding α- and ß-globins were cloned by RT-PCR using the degenerate primers and by the rapid amplification of cDNA ends method. The full-length α-globin cDNA contains an open reading frame of 423 nucleotides encoding 141 amino acid residues, whereas the ß-globin cDNA contains an open reading frame of 438 nucleotides encoding 146 amino acid residues. The authenticity of both α- and ß-globin cDNA clones were also confirmed by the heterologous expression in Escherichia coli (E. coli). This is the first time that the recombinant C. siamensis globins were produced in prokaryotic system. Additionally, the heme group was inserted into the recombinant proteins and purified heme-bound proteins were performed by affinity chromatography using Co(2+)-charged Talon resins. The heme-bound proteins appeared to have a maximum absorbance at 415 nm, indicated that the recombinant proteins bound to oxygen and formed active oxyhemoglobin (HbO2). The results indicated that recombinant C. siamensis globins were successfully expressed in prokaryotic system and possessed an activity as ligand binding protein.


Subject(s)
Alligators and Crocodiles/genetics , Cloning, Molecular , Reptilian Proteins/genetics , alpha-Globins/genetics , beta-Globins/genetics , Alligators and Crocodiles/metabolism , Amino Acid Sequence , Animals , Base Sequence , Gene Expression , Humans , Molecular Sequence Data , Phylogeny , Reptilian Proteins/chemistry , Reptilian Proteins/metabolism , Sequence Alignment , Vertebrates/classification , Vertebrates/genetics , alpha-Globins/chemistry , alpha-Globins/metabolism , beta-Globins/chemistry , beta-Globins/metabolism
13.
Protein J ; 32(2): 89-96, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23328997

ABSTRACT

Ovotransferrin (OTf) is the major glycoprotein in reptile egg whites. However, knowledge concerning its functional and biological properties remains limited. In this study, OTf from Crocodylus siamensis was purified and characterized. The proteins were precipitated with 80 % ammonium sulfate and then purified by anion exchange chromatography followed by hydrophobic interaction chromatography. The purified crocodile ovotransferrin (cOTf) had a molecular weight of 79 kDa. Analysis by two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) indicated multiple isoforms of cOTf, which had isoelectric points ranging from 6.0 to 6.8. cOTf was N-linked glycosylated protein identified by using PNGase F deglycosylation technique. Optimal autoproteolysis of cOTf occurred under acidic conditions and pH values more than 5, which differs from that of OTf.


Subject(s)
Conalbumin/chemistry , Conalbumin/isolation & purification , Reptilian Proteins/chemistry , Alligators and Crocodiles , Animals , Electrophoresis, Gel, Two-Dimensional , Isoelectric Point , Molecular Weight , Ovum/chemistry , Reptilian Proteins/isolation & purification
14.
Toxicon ; 61: 62-71, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23142507

ABSTRACT

Heteromtoxin (HmTx) is a group III phospholipase A(2) produced in Heterometrus laoticus, in Thailand. In this study, HmTx was purified from venom by separation chromatography, and the PLA(2) activity of the fractions was determined by lecithin agar assay. The enzyme is an acidic protein with a pI of 5.6 and an apparent molecular weight of 14018.4 Da. The nucleotide sequence of HmTx contains 649 bp, and the mature protein is predicted to have 131 amino acid residues-104 of which make up the large subunit, and 27 of which make up the small subunit. The subunit structure of HmTx is highly similar to that of the other toxin, Pandinus imperator imperatoxin I (IpTx(i)) and to Mesobuthus tamulus phospholipase A(2) (MtPLA(2)). The 3D-structure of HmTx consists of three conserved alpha-helices: h1 (Lys24-His34), h2 (Cys59-Asp71), and h3 (Ala80-Phe89). The beta-sheet consisted of a single stranded anti-parallel beta-sheet (b1.1 at Glu43-Lys45 and b1.2 at Lys48-Asn50) that was highly similar to the conserved sequences (-CGXG-, -CCXXHDXC- and CXCEXXXXXC-) of Apis mellifera (bee) phospholipases.


Subject(s)
Phospholipases A2/chemistry , Scorpion Venoms/enzymology , Scorpions/chemistry , Amino Acid Sequence , Animals , DNA, Complementary/genetics , Electrophoresis, Polyacrylamide Gel , Models, Genetic , Models, Molecular , Molecular Sequence Data , Molecular Weight , Phospholipases A2/genetics , Phylogeny , Scorpion Venoms/genetics , Scorpions/genetics , Sequence Homology, Amino Acid
15.
Toxicon ; 61: 151-64, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23159790

ABSTRACT

The Thai banded tiger wasp (Vespa affinis) is one of the most dangerous vespid species in Southeast Asia, and stinging accidents involving this species still cause fatalities. In the present study, four forms of V. affinis phospholipase A(1) were identified through a proteomics approach. Two of these enzymes were purified by reverse-phase chromatography, and their biochemical properties were characterised. These enzymes, designated Ves a 1s, are not glycoproteins and exist as 33441.5 and 33474.4 Da proteins, which corresponded with the 34-kDa band observed via SDS-PAGE. The thermal stabilities of these enzymes were stronger than snake venom. Using an in vivo assay, no difference was found in the toxicities of the different isoforms. Furthermore, the toxicity of these enzymes does not appear to be correlated with their PLA(1) activity. The cDNAs of the full-length version of Ves a 1s revealed that the Ves a 1 gene consists of a 1005-bp ORF, which encodes 334 amino acid residues, and 67- and 227-bp 5' and 3' UTRs, respectively. The two isoforms are different by three nucleotide substitutions, resulting in the replacement of two amino acids. Through sequence alignment, these enzymes were classified as members of the pancreatic lipase family. The structural modelling of Ves a 1 used the rat pancreatic lipase-related protein 2 (1bu8A) as a template because it has PLA(1) activity, which demonstrated that this enzyme belongs to the α/ß hydrolase fold family. The Ves a 1 structure, which is composed of seven α-helixes and eleven ß-strands, contains the ß-strand/ɛSer/α-helix structural motif, which contains the Gly-X-Ser-X-Gly consensus sequence. The typical surface structures that play important roles in substrate selectivity (the lid domain and the ß9 loop) were shortened in the Ves a 1 structure, which suggests that this enzyme may only exhibit phospholipase activity. Moreover, the observed insertion of proline into the lid domain of the Ves a 1 structure is rare. We therefore propose that this proline residue might be involved in the stability and activity of Ves a 1s.


Subject(s)
Phospholipases A1/chemistry , Wasp Venoms/enzymology , Wasps/chemistry , Animals , Base Sequence , Chromatography, High Pressure Liquid , DNA, Complementary/genetics , Databases, Factual , Dose-Response Relationship, Drug , Electrophoresis, Polyacrylamide Gel , Gryllidae , Isoenzymes/chemistry , Mass Spectrometry , Models, Molecular , Molecular Sequence Data , Molecular Weight , Paralysis/chemically induced , Phospholipases A1/genetics , Phospholipases A1/isolation & purification , Real-Time Polymerase Chain Reaction , Sequence Analysis, DNA , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Thailand , Wasp Venoms/chemistry
16.
Ann Clin Microbiol Antimicrob ; 11: 22, 2012 Jul 30.
Article in English | MEDLINE | ID: mdl-22846342

ABSTRACT

BACKGROUND: The Siamese crocodile (Crocodylus siamensis) is a critically endangered species of freshwater crocodiles. Crocodilians live with opportunistic bacterial infection but normally suffer no adverse effects. They are not totally immune to microbial infection, but their resistance thereto is remarkably effective. In this study, crude and purified plasma extracted from the Siamese crocodile were examined for antibacterial activity against clinically isolated, human pathogenic bacterial strains and the related reference strains. METHODS: Crude plasma was prepared from whole blood of the Siamese crocodile by differential sedimentation. The crude plasma was examined for antibacterial activity by the liquid growth inhibition assay. The scanning electron microscopy was performed to confirm the effect of crude crocodile plasma on the cells of Salmonella typhi ATCC 11778. Effect of crude crocodile plasma on cell viability was tested by MTT assay. In addition, the plasma was purified by anion exchange column chromatography with DEAE-Toyopearl 650 M and the purified plasma was tested for antibacterial activity. RESULTS: Crude plasma was prepared from whole blood of the Siamese crocodile and exhibited substantial antibacterial activities of more than 40% growth inhibition against the six reference strains of Staphylococcus aureus, Salmonella typhi, Escherichia coli, Vibrio cholerae, Pseudomonas aeruginosa, and Staphylococcus epidermidis, and the four clinical isolates of Staphylococcus epidermidis, Pseudomonas aeruginosa, Salmonella typhi, and Vibrio cholerae. Especially, more than 80% growth inhibition was found in the reference strains of Salmonella typhi, Vibrio cholerae, and Staphylococcus epidermidis and in the clinical isolates of Salmonella typhi and Vibrio cholerae. The effect of the crude plasma on bacterial cells of Salmonella typhi, a certain antibacterial material probably penetrates progressively into the cytoplasmic space, perturbing and damaging bacterial membranes. The effect of the crude plasma was not toxic by the yellow tetrazolium bromide (MTT) assay using a macrophage-like cell, RAW 264.7. The pooled four fractions, designated as fractions D1-D4, were obtained by column chromatography, and only fraction D1 showed growth inhibition in the reference strains and the clinical, human pathogenic isolates. CONCLUSIONS: The crude and purified plasma from the Siamese crocodile significantly showed antibacterial activity against pathogenic bacteria and reference strains by damage cell membrane of target bacterial cells. From the MTT assay, the Siamese crocodile plasma was not cytotoxic to the cells.


Subject(s)
Alligators and Crocodiles/blood , Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Bacterial Infections/microbiology , Blood Bactericidal Activity , Blood Chemical Analysis , Animals , Anti-Bacterial Agents/chemistry , Bacteria/pathogenicity , Cell Line , Humans , Macrophages/drug effects , Mice , Microbial Sensitivity Tests
17.
Protein J ; 31(6): 466-76, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22648692

ABSTRACT

Hemoglobin, α-chain, ß-chain and fragmented hemoglobin of Crocodylus siamensis demonstrated both antibacterial and antioxidant activities. Antibacterial and antioxidant properties of the hemoglobin did not depend on the heme structure but could result from the compositions of amino acid residues and structures present in their primary structure. Furthermore, thirteen purified active peptides were obtained by RP-HPLC analyses, corresponding to fragments in the α-globin chain and the ß-globin chain which are mostly located at the N-terminal and C-terminal parts. These active peptides operate on the bacterial cell membrane. The globin chains of Crocodylus siamensis showed similar amino acids to the sequences of Crocodylus niloticus. The novel amino acid substitutions of α-chain and ß-chain are not associated with the heme binding site or the bicarbonate ion binding site, but could be important through their interactions with membranes of bacteria.


Subject(s)
Alligators and Crocodiles , Anti-Bacterial Agents/chemistry , Antioxidants/chemistry , Hemoglobins/chemistry , Peptide Fragments/chemistry , Reptilian Proteins/chemistry , Amino Acid Sequence , Animals , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/pharmacology , Antifungal Agents/chemistry , Antifungal Agents/isolation & purification , Antifungal Agents/pharmacology , Antioxidants/isolation & purification , Antioxidants/pharmacology , Candida albicans/drug effects , Conserved Sequence , Disk Diffusion Antimicrobial Tests , Gram-Negative Bacteria/drug effects , Gram-Positive Bacteria/drug effects , Gram-Positive Bacteria/ultrastructure , Hemoglobins/isolation & purification , Hemoglobins/pharmacology , Molecular Sequence Data , Peptide Fragments/isolation & purification , Peptide Fragments/pharmacology , Phylogeny , Protein Subunits/chemistry , Protein Subunits/isolation & purification , Protein Subunits/pharmacology , Proteolysis , Reptilian Proteins/isolation & purification , Reptilian Proteins/pharmacology , Sequence Analysis, Protein
18.
Biochim Biophys Acta ; 1824(7): 907-12, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22579962

ABSTRACT

A protease was isolated and purified from Artocarpus heterophyllus (jackfruit) latex and designated as a 48-kDa antimicrobial protease (AMP48) in a previous publication. In this work, the enzyme was characterized for more biochemical and medicinal properties. Enzyme activity of AMP48 was strongly inhibited by phenylmethanesulfonyl fluoride and soybean trypsin inhibitor, indicating that the enzyme was a plant serine protease. The N-terminal amino acid sequences (A-Q-E-G-G-K-D-D-D-G-G) of AMP48 had no sequence similarity matches with any sequence databases of BLAST search and other plant serine protease. The secondary structure of this enzyme was composed of high α-helix (51%) and low ß-sheet (9%). AMP48 had fibrinogenolytic activity with maximal activity between 55 and 60°C at pH 8. The enzyme efficiently hydrolyzed α followed by partially hydrolyzed ß and γ subunits of human fibrinogen. In addition, the fibrinolytic activity was observed through the degradation products by SDS-PAGE and emphasized its activity by monitoring the alteration of secondary structure of fibrin clot after enzyme digestion using ATR-FTIR spectroscopy. This study presented the potential role to use AMP48 as antithrombotic for treatment thromboembolic disorders such as strokes, pulmonary emboli and deep vein thrombosis.


Subject(s)
Artocarpus/chemistry , Fibrinogen/chemistry , Fibrinolytic Agents/chemistry , Latex/chemistry , Plant Proteins/chemistry , Protein Subunits/chemistry , Serine Endopeptidases/chemistry , Amino Acid Sequence , Fibrinolytic Agents/isolation & purification , Humans , Hydrogen-Ion Concentration , Molecular Sequence Data , Phenylmethylsulfonyl Fluoride/chemistry , Plant Proteins/antagonists & inhibitors , Plant Proteins/isolation & purification , Protein Structure, Secondary , Serine Endopeptidases/isolation & purification , Spectroscopy, Fourier Transform Infrared , Temperature , Trypsin Inhibitors/chemistry
19.
J Proteomics ; 75(6): 1940-59, 2012 Mar 16.
Article in English | MEDLINE | ID: mdl-22266102

ABSTRACT

Proteomics of egg white proteins of five reptile species, namely Siamese crocodile (Crocodylus siamensis), soft-shelled turtle (Trionyx sinensis taiwanese), red-eared slider turtle (Trachemys scripta elegans), hawksbill turtle (Eretmochelys imbricate) and green turtle (Chelonia mydas) were studied by 2D-PAGE using IPG strip pH 4-7 size 7 cm and IPG strip pH 3-10 size 24 cm. The protein spots in the egg white of the five reptile species were identified by MALDI-TOF mass spectrometry and LC/MS-MS analysis. Sequence comparison with the database revealed that reptile egg white contained at least seven protein groups, such as serpine, transferrin precursor/iron binding protein, lysozyme C, teneurin-2 (fragment), interferon-induced GTP-binding protein Mx, succinate dehydrogenase iron-sulfur subunit and olfactory receptor 46. This report confirms that transferrin precursor/iron binding protein is the major component in reptile egg white. In egg white of Siamese crocodile, twenty isoforms of transferrin precursor were found. Iron binding protein was found in four species of turtle. In egg white of soft-shelled turtle, ten isoforms of lysozyme were found. Apart from well-known reptile egg white constituents, this study identified some reptile egg white proteins, such as the teneurin-2 (fragment), the interferon-induced GTP-binding protein Mx, the olfactory receptor 46 and the succinate dehydrogenase iron-sulfur subunit.


Subject(s)
Alligators and Crocodiles , Egg Proteins/chemistry , Egg White/chemistry , Turtles , Animals , Chickens , Chromatography, Liquid , Electrophoresis, Polyacrylamide Gel , Glycoproteins/analysis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Tandem Mass Spectrometry
20.
Protein J ; 31(1): 43-50, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22101803

ABSTRACT

Crocodylus siamensis hemoglobin (cHb) was purified by gel filtration chromatography and visualized by SDS-PAGE. Effects of temperature and pH on secondary structure and conformation changes of cHb were studied using circular dichroism spectropolarimeter and fourier transform infrared spectrophotometer. The secondary structure of intact cHb was mainly α-helices. cHb was not heat stable when heated at 65 °C and cooled down to original temperature, indicating the irreversible unfolding process. The stability of cHb at different pH ranging from 2.5 to 10.5 was determined. The maximum value of the α-helix content was found at pH 3.5 and tended to decrease at strong acid and strong base. The antioxidant activities of heat treated cHb and cHb in solution with pH range 2.5 to 10.5 were tested by DPPH radical scavenging assay. cHb at pH 4.5, having highest ß-turn structure, showed highest radical scavenging activity. In contrast to pH, heat had no effect on antioxidant activity of cHb.


Subject(s)
Alligators and Crocodiles/metabolism , Antioxidants/chemistry , Hemoglobins/chemistry , Animals , Antioxidants/isolation & purification , Antioxidants/metabolism , Hemoglobins/isolation & purification , Hemoglobins/metabolism , Hydrogen-Ion Concentration , Protein Stability , Protein Structure, Tertiary , Temperature
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