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1.
Viruses ; 16(6)2024 May 22.
Article in English | MEDLINE | ID: mdl-38932112

ABSTRACT

HIV-associated neurocognitive disorders (HAND) are highly prevalent in those ageing with HIV. High-income country data suggest that vascular risk factors (VRFs) may be stronger predictors of HAND than HIV-disease severity, but data from sub-Saharan Africa are lacking. We evaluated relationships of VRFs, vascular end-organ damage and HAND in individuals aged ≥ 50 in Tanzania. c-ART-treated individuals were assessed for HAND using consensus criteria. The prevalence of VRFs and end organ damage markers were measured. The independent associations of VRFs, end organ damage and HAND were examined using multivariable logistic regression. Data were available for 153 individuals (median age 56, 67.3% female). HAND was highly prevalent (66.7%, 25.5% symptomatic) despite well-managed HIV (70.5% virally suppressed). Vascular risk factors included hypertension (34%), obesity (10.5%), hypercholesterolemia (33.3%), diabetes (5.3%) and current smoking (4.6%). End organ damage prevalence ranged from 1.3% (prior myocardial infarction) to 12.5% (left ventricular hypertrophy). Measured VRFs and end organ damage were not independently associated with HAND. The only significant association was lower diastolic BP (p 0.030, OR 0.969 (0.943-0.997). Our results suggest that vascular risk factors are not major drivers of HAND in this setting. Further studies should explore alternative aetiologies such as chronic inflammation.


Subject(s)
HIV Infections , Humans , Female , Male , Tanzania/epidemiology , Middle Aged , Risk Factors , HIV Infections/complications , HIV Infections/epidemiology , Aged , Prevalence , AIDS Dementia Complex/epidemiology , Anti-HIV Agents/therapeutic use , Antiretroviral Therapy, Highly Active , Neurocognitive Disorders/epidemiology , Neurocognitive Disorders/etiology
2.
Photochem Photobiol Sci ; 17(11): 1599-1611, 2018 Nov 01.
Article in English | MEDLINE | ID: mdl-29855017

ABSTRACT

Photodynamic therapy (PDT) represents a non-toxic and non-mutagenic antitumor therapy. The photosensitizer's (PS) chemo-physical properties are essential for the therapy, being responsible for the biological effects induced in the targeted tissues. In this study, we present the synthesis and development of some glycoconjugated porphyrins based on lectin-type receptor interaction. They were tested in vitro for finally choosing the most effective chemical structure for an optimum antitumor outcome. The most effective photosensitizer is substituted by three diethylene glycol α-d-mannosyl groups. In vivo studies allow firstly the determination of some characteristics of the biological processes triggered by the initial photochemical activation. Secondly, they make it possible to improve the therapeutic protocol in the function of the structural architecture of the targeted tumor tissue.


Subject(s)
Antineoplastic Agents/therapeutic use , Disease Models, Animal , Photochemotherapy , Photosensitizing Agents/therapeutic use , Animals , Antineoplastic Agents/chemistry , Mice , Neoplasms, Experimental/drug therapy , Photosensitizing Agents/chemistry
3.
Equine Vet J ; 50(2): 255-260, 2018 Mar.
Article in English | MEDLINE | ID: mdl-28833497

ABSTRACT

BACKGROUND: Palmar/plantar osteochondral disease (POD) and third metacarpal/-tarsal condylar fractures are considered fatigue injuries of subchondral bone (SCB) and calcified cartilage due to repetitive high loads in racehorses. In combination with adaptive changes in SCB in response to race training, the accumulation of SCB fatigue is likely to result in changes of joint surface mechanical properties. OBJECTIVES: To determine the spatial relationship and correlation of calcified articular surface biomechanical properties with SCB microstructure and training history in the distal palmar metacarpal condyle of Thoroughbred racehorses. STUDY DESIGN: Cross-sectional study. METHODS: Third metacarpal condyles were examined from 31 Thoroughbred horses with micro-computed tomography (microCT). Hyaline cartilage was removed and reference point indentation (RPI) mechanical testing of the calcified articular surface was performed. Training histories were obtained from trainers. The association among indentation distance increase (IDI, an inverse RPI measure of toughness), and microCT and training variables was assessed using a mixed-effects generalised linear model. RESULTS: Untrained horses had higher IDI than horses that had commenced training (P<0.001). Death as a result of musculoskeletal bone fatigue injury (P = 0.044) and presence of POD (P = 0.05) were associated with higher IDI. The microCT variables connectivity density and trabecular pattern factor were positively (P = 0.002) and negatively (P<0.001) correlated with IDI respectively. MAIN LIMITATIONS: The application of RPI to the calcified articular surface is novel and there is a potential for measurement variability with surface unevenness. CONCLUSION: Commencement of race training is associated with altered material properties of the calcified articular surface in horses. Reduced articular surface material properties can also be detected in horses that have fatigue injuries of the distal metacarpus and at other sites in the skeleton. Measures of SCB connectivity and trabecular surface shape may be more important determinants of resistance to failure of the calcified articular surface than traditional measures such as SCB volume and density.


Subject(s)
Bone Density/physiology , Bone and Bones/anatomy & histology , Horses , Metacarpal Bones/physiology , Animals , Biomechanical Phenomena , Cartilage, Articular , Cross-Sectional Studies , Physical Conditioning, Animal , Sports , X-Ray Microtomography
4.
Bone Rep ; 7: 9-16, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28752112

ABSTRACT

The lacunar-canalicular network (LCN) of bone contains osteocytes and their dendritic extensions, which allow for intercellular communication, and are believed to serve as the mechanosensors that coordinate the processes of bone modeling and remodeling. Imbalances in remodeling, for example, are linked to bone disease, including fragility associated with aging. We have reported that there is a reduction in scale for one component of the LCN, osteocyte lacunar volume, across the human lifespan in females. In the present study, we explore the hypothesis that canalicular porosity also declines with age. To visualize the LCN and to determine how its components are altered with aging, we examined samples from young (age: 20-23 y; n = 5) and aged (age: 70-86 y; n = 6) healthy women donors utilizing a fluorescent labelling technique in combination with confocal laser scanning microscopy. A large cross-sectional area of cortical bone spanning the endosteal to periosteal surfaces from the anterior proximal femoral shaft was examined in order to account for potential trans-cortical variation in the LCN. Overall, we found that LCN areal fraction was reduced by 40.6% in the samples from aged women. This reduction was due, in part, to a reduction in lacunar density (21.4% decline in lacunae number per given area of bone), but much more so due to a 44.6% decline in canalicular areal fraction. While the areal fraction of larger vascular canals was higher in endosteal vs. periosteal regions for both age groups, no regional differences were observed in the areal fractions of the LCN and its components for either age group. Our data indicate that the LCN is diminished in aged women, and is largely due to a decline in the canalicular areal fraction, and that, unlike vascular canal porosity, this diminished LCN is uniform across the cortex.

5.
Biomech Model Mechanobiol ; 15(1): 29-42, 2016 Feb.
Article in English | MEDLINE | ID: mdl-25862068

ABSTRACT

In this study, the development of a mechanostatistical model of three-dimensional cortical bone remodelling informed with in vivo equine data is presented. The equine model was chosen as it is highly translational to the human condition due to similar Haversian systems, availability of in vivo bone strain and biomarker data, and furthermore, equine models are recommended by the US Federal Drugs Administration for comparative joint research. The model was derived from micro-computed tomography imaged specimens taken from the equine third metacarpal bone, and the Frost-based 'mechanostat' was informed from both in vivo strain gauges and biomarkers to estimate bone growth rates. The model also described the well-known 'cutting cone' phenomena where Haversian canals tunnel and replace bone. In order to make this model useful in practice, a partial least squares regression (PLSR) surrogate model was derived based on training data from finite element simulations with different loads. The PLSR model was able to predict microstructure and homogenised Young's modulus with errors less than 2.2% and 0.6%, respectively.


Subject(s)
Bone Remodeling , Cortical Bone/physiology , Horses/physiology , Models, Biological , Models, Statistical , Animals , Biomechanical Phenomena , Cortical Bone/diagnostic imaging , Elastic Modulus , Haversian System/physiology , Imaging, Three-Dimensional , Least-Squares Analysis , Weight-Bearing , X-Ray Microtomography
6.
Biomed Microdevices ; 17(3): 9952, 2015.
Article in English | MEDLINE | ID: mdl-25877379

ABSTRACT

High density electrodes are a new frontier for biomedical implants. Increasing the density and the number of electrodes used for the stimulation of retinal ganglion cells is one possible strategy for enhancing the quality of vision experienced by patients using retinal prostheses. The present work presents an integration strategy for a diamond based, high density, stimulating electrode array with a purpose built application specific integrated circuit (ASIC). The strategy is centered on flip-chip bonding of indium bumps to create high count and density vertical interconnects between the stimulator ASIC and an array of diamond neural stimulating electrodes. The use of polydimethylsiloxane (PDMS) housing prevents cross-contamination of the biocompatible diamond electrode with non-biocompatible materials, such as indium, used in the microfabrication process. Micro-imprint lithography allowed edge-to-edge micro-scale pattering of the indium bumps on non-coplanar substrates that have a form factor that can conform to body organs and thus are ideally suited for biomedical applications. Furthermore, micro-imprint lithography ensures the compatibility of lithography with the silicon ASIC and aluminum contact pads. Although this work focuses on 256 stimulating diamond electrode arrays with a pitch of 150 µm, the use of indium bump bonding technology and vertical interconnects facilitates implants with tens of thousands electrodes with a pitch as low as 10 µm, thus ensuring validity of the strategy for future high acuity retinal prostheses, and bionic implants in general.


Subject(s)
Electric Stimulation Therapy/instrumentation , Microelectrodes , Nanodiamonds/chemistry , Nanodiamonds/ultrastructure , Semiconductors , Visual Prosthesis , Animals , Electric Conductivity , Electrodes, Implanted , Humans , Microarray Analysis/instrumentation , Molecular Imprinting/methods , Systems Integration , Visual Acuity/physiology
7.
Bone ; 72: 109-17, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25433340

ABSTRACT

A characteristic relationship for bone between bone volume fraction (BV/TV) and specific surface (BS/TV) has previously been proposed based on 2D histological measurements. This relationship has been suggested to be bone intrinsic, i.e., to not depend on bone type, bone site and health state. In these studies, only limited data comes from cortical bone. The aim of this paper was to investigate the relationship between BV/TV and BS/TV in human cortical bone using high-resolution micro-CT imaging and the correlations with subject-specific biometric data such as height, weight, age and sex. Images from femoral cortical bone samples of the Melbourne Femur Collection were obtained using synchrotron radiation micro-CT (SPring8, Japan). Sixteen bone samples from thirteen individuals were analysed in order to find bone volume fraction values ranging from 0.20 to 1. Finally, morphological models of the tissue microstructure were developed to help explain the relationship between BV/TV and BS/TV. Our experimental findings indicate that the BV/TV vs BS/TV relationship is subject specific rather than intrinsic. Sex and pore density were statistically correlated with the individual curves. However no correlation was found with body height, weight or age. Experimental cortical data points deviate from interpolating curves previously proposed in the literature. However, these curves are largely based on data points from trabecular bone samples. This finding challenges the universality of the curve: highly porous cortical bone is significantly different to trabecular bone of the same porosity. Finally, our morphological models suggest that changes in BV/TV within the same sample can be explained by an increase in pore area rather than in pore density. This is consistent with the proposed mechanisms of age-related endocortical bone loss. In addition, these morphological models highlight that the relationship between BV/TV and BS/TV is not linear at high BV/TV as suggested in the literature but is closer to a square root function.


Subject(s)
Bone and Bones/pathology , Porosity , Aged , Aged, 80 and over , Body Height , Body Weight , Bone Density , Computer Simulation , Female , Femur/pathology , Humans , Imaging, Three-Dimensional , Male , Middle Aged , Models, Theoretical , Reproducibility of Results , Synchrotrons
8.
Acta Obstet Gynecol Scand ; 92(7): 858-61, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23581719

ABSTRACT

The increase in immigration from countries with a high prevalence of female genital mutilation (FGM) has highlighted the need for knowledge and sensitivity in this area of healthcare in high-resource countries. We have surveyed with an online questionnaire 607 members, fellows and trainees of the Royal College of Obstetricians and Gynaecologists (RCOG) on knowledge about the RCOG guidelines for FGM. Completed training and more practical experience with women affected by FGM significantly increased knowledge. Many respondents were not aware of specialist services locally (22.9%) or how to access them (52.3%). Some areas of insufficient knowledge were identified, in particular in relation to psychiatric morbidity, HIV, hepatitis B and pelvic infection. More specialized training efforts might improve this aspect.


Subject(s)
Circumcision, Female , Clinical Competence/statistics & numerical data , Gynecology , Obstetrics , Physicians , Practice Guidelines as Topic , Circumcision, Female/adverse effects , Circumcision, Female/education , Circumcision, Female/psychology , Female , Gynecology/education , Health Care Surveys , Humans , Linear Models , Obstetrics/education , Referral and Consultation , Surveys and Questionnaires , United Kingdom
9.
Int J Numer Method Biomed Eng ; 29(1): 129-43, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23293073

ABSTRACT

In the neck of the femur, about 70% of the strength is contributed by the cortical bone, which is the most highly stressed part of the structure and is the site where failure is almost certainly initiated. A better understanding of cortical bone remodelling mechanisms can help discern changes at this anatomical site, which are essential if an understanding of the mechanisms by which hips weaken and become vulnerable to fracture is to be gained. The aims of this study were to (i) examine a hypothesis that low strain fields arise because of subject-specific Haversian canal distributions causing bone resorption and reduced bone integrity and (ii) introduce the use of a meshless particle-based computational modelling approach SPH to capture bone remodelling features at the level of the Haversian canals. We show that bone remodelling initiated by strain at the Haversian level is highly influenced by the subject-specific pore distribution, bone density, loading and osteocyte density. SPH is shown to be effective at capturing the intricate bone pore shapes that evolved over time.


Subject(s)
Bone Resorption , Femur Neck , Hip Fractures , Models, Biological , Stress, Physiological , Aged , Aged, 80 and over , Female , Femur Neck/pathology , Femur Neck/physiopathology , Hip Fractures/pathology , Hip Fractures/physiopathology , Humans , Hydrodynamics , Male
10.
Proc Inst Mech Eng H ; 225(6): 585-96, 2011 Jun.
Article in English | MEDLINE | ID: mdl-22034742

ABSTRACT

Homogenized elastic properties are often assumed for macro-finite element (FE) models used in orthopaedic biomechanics. The accuracy of material property assignments may have a strong effect on the ability of these models to make accurate predictions. For cortical bone, most macro-scale FE models assume isotropic elastic material behaviour and do not include variation of material properties due to bone micro-architecture. The first aim of the present study was to evaluate the variation of apparent-level (homogenized) orthotropic elastic constants of cortical bone with age and indices of bone micro-architecture. Considerable age-dependent differences in porosity were noted across the cortical thickness in previous research. The second aim of the study was to quantify the resulting differences in elastic constants between the periosteum and endosteum. Specimens were taken from the anterior femoral midshaft of 27 female donors (age 53.4 +/- 23.6 years) and micro-FE (gFE) analysis was used to derive orthotropic elastic constants. The variation of orthotropic elastic constants (Young's moduli, shear moduli, and Poisson's ratios) with various cortical bone micro-architectural indices was investigated. The ratio of canal volume to tissue volume, Ca.V/TV, analogous to porosity, was found to be the strongest predictor (r2(ave) = 0.958) of the elastic constants. Age was less predictive (r2(ave) = 0.385) than Ca.V/TV. Elastic anisotropy increased with increasing Ca.V/TV, leading to lower elastic moduli in the transverse, typically less frequently loaded, directions. Increased Ca.V/TV led to a more substantial reduction in elastic constants at the endosteal aspect than at the periosteal aspect. The results are expected to be most applicable in similar midshaft locations of long bones; specific analysis of other sites would be necessary to evaluate elastic properties elsewhere. It was concluded that Ca.V/TV was the most predictive of cortical bone elastic constants and that considerable periosteal-endosteal variations in these constants can develop with bone loss.


Subject(s)
Elastic Modulus/physiology , Femur/ultrastructure , Finite Element Analysis , Periosteum/ultrastructure , Adult , Age Factors , Aged , Aged, 80 and over , Anisotropy , Female , Humans , Linear Models , Middle Aged , Models, Biological , Porosity , Tomography, X-Ray Computed
11.
Oper Dent ; 36(6): 618-25, 2011.
Article in English | MEDLINE | ID: mdl-21864124

ABSTRACT

OBJECTIVE: This study compared the microshear bond strengths (MSBS) of four self-etching adhesives (Adper Scotchbond SE [SSE], Clearfil SE Bond [CSE], Clearfil S3 Bond [CS3] and One Coat 7.0 [OC]) and an etch-and-rinse adhesive (Adper Single Bond Plus [SB]) when bonded to two conventional glass ionomer cements (GICs) (Fuji IX GP EXTRA and Riva Self Cure). The null hypothesis tested was there is no difference in the adhesive ability of an etch-and-rinse adhesive and self-etching adhesives when bonded to GIC for up to 6 months. METHODS: The GICs were embedded in type III dental stone and wet ground with 1200-grit SiC paper. Twenty specimens were bonded for each adhesive according to manufacturers' instructions with a 1.5-mm bonding diameter. Specimens were stored at 100% humidity for 24 hours, 1 month, or 6 months. Microshear bond strengths were obtained using a crosshead speed of 1 mm/min. The results were calculated and analyzed using analysis of variance (ANOVA) and Tukey HSD test. RESULTS: SB had significantly lower MSBS than the four self-etching adhesives for all storage periods. MSBS at 6 months for SB was significantly lower than at 1 month. There were no significant differences in MSBS among the self-etching adhesives. Cohesive failure within GIC was the most common failure mode observed. CONCLUSIONS: SB showed a lower bond strength than the self-etching adhesives when bonded to conventional GICs for all storage periods. This might be a result of the phosphoric acid etching. However, cohesive strength of GIC was a limiting factor for the MSBS outcomes.


Subject(s)
Dental Bonding , Glass Ionomer Cements , Resin Cements , Composite Resins , Dental Cavity Lining , Dental Etching/methods , Dental Stress Analysis , Materials Testing , Resin Cements/chemistry , Shear Strength , Time Factors , Water
12.
Phys Med Biol ; 56(16): 5265-74, 2011 Aug 21.
Article in English | MEDLINE | ID: mdl-21791734

ABSTRACT

By applying a phase-retrieval step before carrying out standard filtered back-projection reconstructions in tomographic imaging, we were able to resolve structures with small differences in density within a densely absorbing sample. This phase-retrieval tomography is particularly suited for the three-dimensional segmentation of secondary osteons (roughly cylindrical structures) which are superimposed upon an existing cortical bone structure through the process of turnover known as remodelling. The resulting images make possible the analysis of the secondary osteon structure and the relationship between an osteon and the surrounding tissue. Our observations have revealed many different and complex 3D structures of osteons that could not be studied using previous methods. This work was carried out using a laboratory-based x-ray source, which makes obtaining these sorts of images readily accessible.


Subject(s)
Haversian System/cytology , Imaging, Three-Dimensional/methods , Tomography/methods , Femur/cytology , Humans
13.
J Anat ; 219(4): 481-9, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21644972

ABSTRACT

Cortical bone histology has been the subject of scientific inquiry since the advent of the earliest microscopes. Histology - literally the study of tissue - is a field nearly synonymous with 2D thin sections. That said, progressive developments in high-resolution X-ray imaging are enabling 3D visualization to reach ever smaller structures. Micro-computed tomography (micro-CT), employing conventional X-ray sources, has become the gold standard for 3D analysis of trabecular bone and is capable of detecting the structure of vascular (osteonal) porosity in cortical bone. To date, however, direct 3D visualization of secondary osteons has eluded micro-CT based upon absorption-derived contrast. Synchrotron radiation micro-CT, through greater image quality, resolution and alternative contrast mechanisms (e.g. phase contrast), holds great potential for non-destructive 3D visualization of secondary osteons. Our objective was to demonstrate this potential and to discuss areas of bone research that can be advanced through the application of this approach. We imaged human mid-femoral cortical bone specimens derived from a 20-year-old male (Melbourne Femur Collection) at the Advanced Photon Source synchrotron (Chicago, IL, USA) using the 2BM beam line. A 60-mm distance between the target and the detector was employed to enhance visualization of internal structures through propagation phase contrast. Scan times were 1 h and images were acquired with 1.4-µm nominal isotropic resolution. Computer-aided manual segmentation and volumetric 3D rendering were employed to visualize secondary osteons and porous structures, respectively. Osteonal borders were evident via two contrast mechanisms. First, relatively new (hypomineralized) osteons were evident due to differences in X-ray attenuation relative to the surrounding bone. Second, osteon boundaries (cement lines) were delineated by phase contrast. Phase contrast also enabled the detection of soft tissue remnants within the vascular pores. The ability to discern osteon boundaries in conjunction with vascular and cellular porosity revealed a number of secondary osteon morphologies and provided a unique 3D perspective of the superimposition of secondary osteons on existing structures. Improvements in resolution and optimization of the propagation phase contrast promise to provide further improvements in structural detail in the future.


Subject(s)
Femur/diagnostic imaging , Haversian System/diagnostic imaging , Humans , Imaging, Three-Dimensional , Male , Synchrotrons , X-Ray Microtomography , Young Adult
14.
Bone ; 47(5): 866-71, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20691298

ABSTRACT

Tomographic reconstructions of sections of human femoral bone were created from x-ray data sets taken using synchrotron radiation of 26.4 keV and with isotropic voxels 1.47 µm on a side. We demonstrate that it is possible to segment the data to isolate both the osteocyte lacunae and the Haversian canals in the bone as well as identifying osteon boundaries. From this information a wealth of data relating to bone structure becomes available. The data were used to map the spatial positions of the osteocyte lacunae, relative to the Haversian canals and of the osteon boundaries. The dimensions and volume of the imaged osteocyte lacunae were measured for close to 10,000 lacunae. When averaged over the 11 osteons measured, osteocyte densities varied from 4×10(4)per mm(3) close to the Haversian canals to about 9×10(4)per mm(3) at 80% of osteon radius. The nearest-neighbour distances varied from 10 µm to 40 µm with a peak at 23 µm and an approximately normal distribution. The distribution of lacunar long-axis length was also approximately normal with a small positive skew and the peak value was 8 µm with a range from 3 µm to 20 µm. The most significant finding from this study was that the distribution of the measured volumes of osteocyte lacunae had two distinct peaks, one at 200 µm(3) and a second at 330 µm(3).


Subject(s)
Femur/cytology , Femur/diagnostic imaging , Osteocytes/diagnostic imaging , X-Ray Microtomography/methods , Adult , Humans , Male , Young Adult
15.
Ann Pharm Fr ; 68(3): 195-202, 2010 May.
Article in French | MEDLINE | ID: mdl-20569775

ABSTRACT

Photodynamic therapy (PDT) is a recent approach for the treatment of small cancerous tumours, on-surface or accessible by endoscopy in which a dye (usually a tetrapyrrolic macrocycle) absorbs light and generates cytotoxic reactive oxygen species leading to cellular damage. Retinoblastoma (Rb) is a rare intraocular tumour of childhood. All the multifocal forms are hereditary and constitute a syndrome of genetic predisposition in the cancer. The current treatments with etoposide or carboplatine expose the patient to the late risk of second cancer. The use of PDT as cancer therapy is particularly attractive due to the use of few mutagenic and non-toxic photosensitizers (PS) prior light excitation and to the localized tumour illumination. The photoefficiency towards Rb of a glycoconjugated porphyrin is discussed and compared with the results obtained with a second-generation photosensitizer, the Foscan. Some in vivo results on an animal model of Rb are presented by a point of view of photoefficiency, biodistribution, pharmacokinetic and longitudinal follow-up of the PDT effect using a new non-invasive method of magnetic resonance imaging of real-time. Photodynamic treatments in association with non-invasive sodium imaging open ways for new treatment tailoring or treatment individualization of retinoblastoma in clinic.


Subject(s)
Photochemotherapy , Retinal Neoplasms/drug therapy , Retinoblastoma/drug therapy , Animals , Chemistry, Pharmaceutical , Humans , Magnetic Resonance Imaging , Mice , Neoplasm Transplantation , Photochemotherapy/methods , Photosensitizing Agents/pharmacokinetics , Photosensitizing Agents/therapeutic use , Retinal Neoplasms/pathology , Retinoblastoma/pathology
16.
Nucleic Acids Res ; 38(6): 1874-88, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20044350

ABSTRACT

Plasmid encoded replication initiation (Rep) proteins recruit host helicases to plasmid replication origins. Previously, we showed that RepD recruits directionally the PcrA helicase to the pC221 oriD, remains associated with it, and increases its processivity during plasmid unwinding. Here we show that RepD forms a complex extending upstream and downstream of the core oriD. Binding of RepD causes remodelling of a region upstream from the core oriD forming a 'landing pad' for the PcrA. PcrA is recruited by this extended RepD-DNA complex via an interaction with RepD at this upstream site. PcrA appears to have weak affinity for this region even in the absence of RepD. Upon binding of ADPNP (non-hydrolysable analogue of ATP), by PcrA, a conformational rearrangement of the RepD-PcrA-ATP initiation complex confines it strictly within the boundaries of the core oriD. We conclude that RepD-mediated recruitment of PcrA at oriD is a three step process. First, an extended RepD-oriD complex includes a region upstream from the core oriD; second, the PcrA is recruited to this upstream region and thirdly upon ATP-binding PcrA relocates within the core oriD.


Subject(s)
Bacterial Proteins/metabolism , DNA Helicases/metabolism , DNA-Binding Proteins/metabolism , Plasmids/genetics , Replication Origin , Staphylococcus aureus/genetics , Adenosine Triphosphate/metabolism , Base Sequence , DNA Footprinting , DNA, Bacterial/chemistry , DNA, Bacterial/metabolism , DNA, Bacterial/ultrastructure , Deoxyribonuclease I , Exodeoxyribonucleases , Molecular Sequence Data , Nucleic Acid Conformation , Protein Binding
17.
Anat Rec (Hoboken) ; 292(1): 48-64, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19051245

ABSTRACT

The bone growth process has long-lasting effects on adult bone structure and mechanical adaptation, yet the tissue level dynamics of growth are poorly studied. The specific aims of this study were to (1) quantify changes in bone size and shape through ontogeny, (2) describe the distribution of tissue types and patterns of cortical drift and expansion through ontogeny, and (3) explore relationships between cortical drift and ontogenetic variation geometric size and shape. The study utilized 14 juvenile (ages 2-19) mid-shaft femur blocks removed at autopsy from individuals who died suddenly. Eighty-mum-thick sections were imaged using polarized and brightfield microscopy. For descriptive purposes the sample was divided into five age groups. Features of collagen fiber matrix orientation, vascularity (e.g., pore orientation and density), and osteocyte lacunar density and shape were used to classify primary and secondary tissue types in LM images. This information, combined with evaluation of resorptive versus depositional bone surfaces, was used to identify cortical drift direction. A pattern of posterior and medial drift was identified at the mid-shaft femur in the toddler years. The drift pattern shifts antero-laterally in late childhood, predating the appearance of a more adult-like geometry. On the basis of the presence of transitional fibrolamellar bone complex, growth is more rapid during the toddler years and peri-puberty, and slower in early to late childhood and in later adolescence. Extensive variability in histological and geometric organization typifies the sample, particularly beginning in late childhood. The potential implications of this variability for adult fracture risk warrant further study. Anat Rec, 2009. (c) 2008 Wiley-Liss, Inc.


Subject(s)
Bone Density/physiology , Bone Remodeling/physiology , Femur/anatomy & histology , Femur/growth & development , Osteogenesis/physiology , Adolescent , Bone Development/physiology , Child , Child, Preschool , Female , Humans , Male , Young Adult
19.
Science ; 320(5873): 222-6, 2008 Apr 11.
Article in English | MEDLINE | ID: mdl-18403708

ABSTRACT

Globally, priority areas for biodiversity are relatively well known, yet few detailed plans exist to direct conservation action within them, despite urgent need. Madagascar, like other globally recognized biodiversity hot spots, has complex spatial patterns of endemism that differ among taxonomic groups, creating challenges for the selection of within-country priorities. We show, in an analysis of wide taxonomic and geographic breadth and high spatial resolution, that multitaxonomic rather than single-taxon approaches are critical for identifying areas likely to promote the persistence of most species. Our conservation prioritization, facilitated by newly available techniques, identifies optimal expansion sites for the Madagascar government's current goal of tripling the land area under protection. Our findings further suggest that high-resolution multitaxonomic approaches to prioritization may be necessary to ensure protection for biodiversity in other global hot spots.


Subject(s)
Anura , Biodiversity , Conservation of Natural Resources , Insecta , Lemur , Lizards , Plants , Algorithms , Animals , Conservation of Natural Resources/methods , Ecosystem , Geography , Madagascar , Trees
20.
Science ; 313(5785): 351-4, 2006 Jul 21.
Article in English | MEDLINE | ID: mdl-16857940

ABSTRACT

Despite widespread concern about declines in pollination services, little is known about the patterns of change in most pollinator assemblages. By studying bee and hoverfly assemblages in Britain and the Netherlands, we found evidence of declines (pre-versus post-1980) in local bee diversity in both countries; however, divergent trends were observed in hoverflies. Depending on the assemblage and location, pollinator declines were most frequent in habitat and flower specialists, in univoltine species, and/or in nonmigrants. In conjunction with this evidence, outcrossing plant species that are reliant on the declining pollinators have themselves declined relative to other plant species. Taken together, these findings strongly suggest a causal connection between local extinctions of functionally linked plant and pollinator species.


Subject(s)
Bees , Biodiversity , Diptera , Ecosystem , Plants , Pollen , Animal Migration , Animals , Environment , Flowers , Netherlands , Population Dynamics , United Kingdom
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