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1.
Bioorg Khim ; 17(1): 42-6, 1991 Jan.
Article in Russian | MEDLINE | ID: mdl-2064623

ABSTRACT

Analysis of the blood serum of healthy and infected with malaria plasmodium mice showed a steep rise in content of linear double-stranded DNA (0.2-0.5 and 2-15 gamma/ml, respectively). Some physico-chemical properties of serum DNA and a DNA-associated glycoprotein (M approximately 40 kDa) are determined.


Subject(s)
Malaria/blood , Nucleoproteins/blood , Amino Acids/analysis , Animals , DNA/chemistry , Electrophoresis, Agar Gel , Electrophoresis, Polyacrylamide Gel , Malaria/veterinary , Mice , Nucleoproteins/isolation & purification
2.
Bioorg Khim ; 17(1): 47-52, 1991 Jan.
Article in Russian | MEDLINE | ID: mdl-2064624

ABSTRACT

From the tryptic hydrolysis of 40-kDa protein from the mouse blood serum thirty-four peptides were isolated by HPLC, of which complete and partial amino acid sequence was established for twenty-eight and six, respectively. On the basis of these data the protein is identified as the blood serum alpha 1-acid glycoprotein.


Subject(s)
Blood Proteins/chemistry , Nucleoproteins/blood , Orosomucoid/chemistry , Amino Acid Sequence , Animals , Chromatography, High Pressure Liquid , Hydrolysis , Malaria/blood , Malaria/veterinary , Mice , Molecular Sequence Data , Trypsin
3.
Bioorg Khim ; 14(3): 333-9, 1988 Mar.
Article in Russian | MEDLINE | ID: mdl-2454631

ABSTRACT

Interaction of MspI restriction endonuclease with a series of oligodeoxynucleotides, varying in stability of secondary structure and in location of the restriction site, has been studied. It is shown that a functionally active MspI-site must be double-stranded and flanked from both sides. Separate MspI-cleavage of dodecanucleotides dCGACCCGGGATC and dGATCCCGGGTCG is inhibited by the reaction products as well as by non-homological hexanucleotides dGGTACC and dGGATCC (but not by dCGGCGC). Polyethylene glycol in low concentrations (1-3%) promotes and in higher concentrations (7-14%) inhibits the cleavage. A scheme of MspI functioning is suggested including enzyme's step-by-step recognition of the restriction site and its nonspecific interaction with flanking segments of DNA, which leads to formation of the productive complex.


Subject(s)
DNA Restriction Enzymes/metabolism , Oligodeoxyribonucleotides/metabolism , Base Sequence , Binding Sites , Deoxyribonuclease HpaII , Electrophoresis, Polyacrylamide Gel , Nucleic Acid Heteroduplexes , Oligodeoxyribonucleotides/chemical synthesis , Protein Conformation , Substrate Specificity
4.
Bioorg Khim ; 12(11): 1484-91, 1986 Nov.
Article in Russian | MEDLINE | ID: mdl-3026408

ABSTRACT

Hybridization of synthetic oligodeoxynucleotides with single-stranded phage M13mp2 DNA has been studied in terms of temperature, ionic strength, oligonucleotide molar excess and chain length, and DNA secondary structure. Combination of two decadeoxynucleotides corresponding to a nicked eicosamer (composite primer) was found to be efficient in the template-directed DNA polymerase-catalyzed chain elongation, where both decamers separately failed. Circular SS DNA was specifically linearized by BamHI cleavage of SS DNA-tetradecadeoxynucleotide duplex.


Subject(s)
DNA Restriction Enzymes , DNA, Single-Stranded/analysis , DNA-Directed DNA Polymerase , Nucleic Acid Conformation , Nucleic Acid Hybridization , Oligodeoxyribonucleotides/analysis , Coliphages/analysis , DNA, Viral/analysis , Electrophoresis, Polyacrylamide Gel
5.
Bioorg Khim ; 12(5): 640-6, 1986 May.
Article in Russian | MEDLINE | ID: mdl-3015153

ABSTRACT

Interaction of the restriction endonuclease BamHI with a series of synthetic oligodeoxynucleotides containing the restriction site has been studied. The enzyme is shown to specifically cut the BamHI site in hexanucleotide (I) and in non-selfcomplementary deca- and octanucleotides (II)-(IV). The data obtained led to the conclusion that BamHI reacts with duplex structures, while playing an important role in their stabilization. In 14-mer (V) BamHI cuts a non-standard half-site GAA to yield the 5'-terminal tri- (rather than hepta-) nucleotide. Hypothetical mechanisms of the process are discussed basing on conception of the role of higher DNA structures in the interaction with restriction endonucleases.


Subject(s)
DNA Restriction Enzymes/metabolism , Oligodeoxyribonucleotides/metabolism , Base Sequence , Deoxyribonuclease BamHI , Electrophoresis, Polyacrylamide Gel , In Vitro Techniques , Macromolecular Substances , Nucleic Acid Conformation , Oligodeoxyribonucleotides/chemical synthesis
6.
Bioorg Khim ; 12(1): 116-23, 1986 Jan.
Article in Russian | MEDLINE | ID: mdl-3004511

ABSTRACT

In the course of studying extrachromosomal DNA with composite replicons, a hybrid has been constructed by the in vitro recombination of the filamentous phage M13mp2 DNA (RF) and plasmid pUR222 (ApR). Both parental DNAs contain a fragment of lac-operon (ca. 800 bp), which includes the distal end of lacI gene, lacPO segments, and the lacZ gene proximal region coding for 145 N-terminal amino acid residues of beta-galactosidase and thus providing for alpha-complementation, the effect being cancelled with a polynucleotide insertion at the unique EcoRI site in the lacZ gene segment. E. coli BMH71-18 cells were transformed with the ligated mixture of EcoRI restricts of both DNAs. A phage-like nucleoprotein was isolated from colourless plaques (on the Xgal- and IPTG-supplemented medium); its deproteinization yielded a DNA which contains the ApR-determinant and, according to PAGE, structurally specific staining, restriction analysis, sequencing by the Sanger procedure, and electron microscopy data, is a linear double-stranded molecule comprising the phage and plasmid genomes in an equimolar ratio. Since the hybrid DNA does not display the alpha-complementation effect, both bacterial inserts are in the opposite orientation. Transformation of both phage (F+) and plasmid (F-) hosts with the hybrid DNA led to cultures which, after precipitation of the nucleoprotein from the extracellular medium and deproteinization, afforded the same composite DNA.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Coliphages/analysis , DNA, Recombinant/isolation & purification , DNA, Viral/analysis , Nucleic Acid Hybridization , Plasmids , Chromosome Mapping , Coliphages/genetics , DNA Restriction Enzymes , DNA, Circular/analysis , DNA, Circular/genetics , DNA, Recombinant/analysis , DNA, Viral/genetics , Electrophoresis, Agar Gel
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