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1.
Animals (Basel) ; 14(8)2024 Apr 22.
Article in English | MEDLINE | ID: mdl-38672398

ABSTRACT

Mammary gland tumors represent the most frequently diagnosed malignant neoplasm in intact female dogs, and surgical removal represents the current gold standard treatment. To promote wound healing and prevent possible bacterial contamination, perioperative antimicrobials are commonly used in clinical practice, even though there are no publications establishing guidelines for the use of such drugs in canine mastectomy. The aim of the present study was to evaluate the ameliorative effect of fluorescent light energy on the quality of the healing process after mastectomy surgery in female dogs, in the absence of perioperative antimicrobial administration. Nine female dogs received a multiple-gland mastectomy due to gland tumors and received FLE application immediately after surgery and then five days after. The surgical incisions were evaluated by a blind investigator over time using the Modified Hollander Cosmesis and Modified Draize Wound Healing Score systems. Statistical analysis revealed a significant ameliorative effect of FLE in the control of step-off borders, contour irregularities, and excessive distortion. In addition, erythema, edema, and serous discharge were lower for those wounds managed with FLE. These results underscore the advantageous impact of FLE on the healing of post-mastectomy wounds in female dogs, offering the dual benefits of reducing potential infection risks and lessening the home care burden for pet owners.

2.
J Chem Theory Comput ; 20(9): 4019-4028, 2024 May 14.
Article in English | MEDLINE | ID: mdl-38642040

ABSTRACT

A quantum chemistry (QC)/molecular dynamics (MD) scheme is developed to calculate electronic properties of semiconducting polymers in three steps: (i) constructing the polymer force field through a unified workflow, (ii) equilibrating polymer models, and (iii) calculating electronic structure properties (e.g., density of states and localization length) from the equilibrated models by QC approaches. Notably, as the second step of this scheme is generally the most time-consuming one, we introduce an alternative method to compute thermally averaged electronic properties in bulk, based on the simulation of a polymer chain in the solution of its repeat units, which is shown to reproduce the microstructure of polymer chains and their electrostatic effect (successfully tested for five benchmark polymers) 10 times faster than state-of-the-art methods. In fact, this scheme offers a consistent and speedy way of estimating electronic properties of polymers from their chemical drawings, thus ensuring the availability of a homogeneous set of simulations to derive structure-property relationships and material design principles. As an example, we show how the electrostatic effect of the polymer chain environment can disturb the localized electronic states at the band tails and how this effect is more significant in the case of diketopyrrolopyrrole polymers as compared to indacenodithiophene and dithiopheneindenofluorene ones.

3.
ACS Nano ; 18(10): 7444-7454, 2024 Mar 12.
Article in English | MEDLINE | ID: mdl-38411123

ABSTRACT

We report a strong and structurally sensitive 13C intramolecular conductance isotope effect (CIE) for oligophenyleneimine (OPI) molecular wires connected to Au electrodes. Wires were built from Au surfaces beginning with the formation of 4-aminothiophenol self-assembled monolayers (SAMs) followed by subsequent condensation reactions with 13C-labeled terephthalaldehyde and phenylenediamine; in these monomers the phenylene rings were either completely 13C-labeled or the naturally abundant 12C isotopologues. Alternatively, perdeuterated versions of terephthalaldehyde and phenylenediamine were employed to make 2H(D)-labeled OPI wires. For 13C-isotopologues of short OPI wires (<4 nm) in length where the charge transport mechanism is tunneling, there was no measurable effect, i.e., 13C CIE ≈ 1, where CIE is defined as the ratio of labeled and unlabeled wire resistances, i.e., CIE = Rheavy/Rlight. However, for long OPI wires >4 nm, in which the transport mechanism is polaron hopping, a strong 13C CIE = 4-5 was observed. A much weaker inverse CIE < 1 was evident for the longest D-labeled wires. Importantly, the magnitude of the 13C CIE was sensitive to the number and spacing of 13C-labeled rings, i.e., the CIE was structurally sensitive. The structural sensitivity is intriguing because it may be employed to understand polaron hopping mechanisms and charge localization/delocalization in molecular wires. A preliminary theoretical analysis explored several possible explanations for the CIE, but so far a fully satisfactory explanation has not been identified. Nevertheless, the latest results unambiguously demonstrate structural sensitivity of the heavy atom CIE, offering directions for further utilization of this interesting effect.

4.
J Chem Theory Comput ; 20(3): 1252-1262, 2024 Feb 13.
Article in English | MEDLINE | ID: mdl-38305003

ABSTRACT

The optical, electronic, and (photo) catalytic properties of covalent organic frameworks (COFs) are largely determined by their electronic structure and, specifically, by their Frontier conduction and valence bands (VBs). In this work, we establish a transparent relationship between the periodic electronic structure of the COFs and the orbital characteristics of their individual molecular building units, a relationship that is challenging to unravel through conventional solid-state calculations. As a demonstration, we applied our method to five COFs with distinct framework topologies. Our approach successfully predicts their first-principles conduction and VBs by expressing them as a linear combination of the Frontier molecular orbitals localized on the COF fragments. We demonstrate that our method allows for the rapid exploration of the impact of chemical modifications on the band structures of COFs, making it highly suitable for further application in the quest to discover new functional materials.

5.
Chem Sci ; 15(2): 500-510, 2024 Jan 03.
Article in English | MEDLINE | ID: mdl-38179524

ABSTRACT

We evaluate the effectiveness of fine-tuning GPT-3 for the prediction of electronic and functional properties of organic molecules. Our findings show that fine-tuned GPT-3 can successfully identify and distinguish between chemically meaningful patterns, and discern subtle differences among them, exhibiting robust predictive performance for the prediction of molecular properties. We focus on assessing the fine-tuned models' resilience to information loss, resulting from the absence of atoms or chemical groups, and to noise that we introduce via random alterations in atomic identities. We discuss the challenges and limitations inherent to the use of GPT-3 in molecular machine-learning tasks and suggest potential directions for future research and improvements to address these issues.

6.
Vet Res Commun ; 48(1): 357-366, 2024 Feb.
Article in English | MEDLINE | ID: mdl-37707657

ABSTRACT

Canine seminal plasma is a complex fluid containing proteins, peptides, enzymes, hormones as well as extracellular vesicles that are involved in many physiological and pathological processes including reproduction. We examined the expression of the extracellular vesicles surface antigens Aminopeptidase-N (CD13) and Dipeptidyl peptidase IV (CD26) by flow cytometry. For this study, third fraction of the ejaculate, from fertile adult male German Shepherd dogs, was manually collected twice, two days apart. FACS analyses revealed that CD13 and CD26 are co-expressed on the 69.3 ± 3.7% of extracellular vesicles and only a 2.0 ± 0.5% of extracellular vesicles express CD26 alone. On the other hand, 28.6 ± 3.6% of seminal EVs express CD13 alone. Our results agree with the hypothesis that CD26 needs to be co-expressed with other signal-transducing molecules, while CD13, can perform functions independently of the presence or co-expression of CD26. The results obtained in normal fertile dogs could represent physiological expression of these enzymes. Therefore, it would be interesting to carry out further studies to evaluate the expression of CD13 and CD26 on extracellular vesicles as biomarker for prostate pathological condition in dogs.


Subject(s)
Dipeptidyl Peptidase 4 , Semen , Dogs , Male , Animals , Dipeptidyl Peptidase 4/genetics , Dipeptidyl Peptidase 4/metabolism , CD13 Antigens/genetics , CD13 Antigens/metabolism , Flow Cytometry/veterinary
7.
J Phys Chem Lett ; 14(39): 8867-8873, 2023 Oct 05.
Article in English | MEDLINE | ID: mdl-37756473

ABSTRACT

Morphological and electronic properties of indacenodithiophene-co-benzothiadiazole (IDTBT) copolymer with varying molecular weights are calculated through combined molecular dynamics (MD) and quantum chemical (QC) methods. Our study focuses on the polymer chain arrangements, interchain connectivity pathways, and interplay between morphological and electronic structure properties of IDTBT. Our models, which are verified against GIWAXS measurements, show a considerable number of BT-BT π-π interactions with a (preferential) perpendicular local orientation of polymer chains due to the steric hindrance of bulky side chains around IDT. Although our models predict a noncrystalline structure for IDTBT, the BT-BT (interchain) crossing points show a considerable degree of short-range order in spatial arrangement which most likely result in a mesh-like structure for the polymer and provide efficient pathways for interchain charge transport.

8.
J Am Chem Soc ; 145(36): 19790-19799, 2023 Sep 13.
Article in English | MEDLINE | ID: mdl-37639703

ABSTRACT

Molecules where the energy of the lowest excited singlet state is found below the energy of the lowest triplet state (inverted singlet-triplet molecules) are extremely rare. It is particularly challenging to discover new ones through virtual screening because the required wavefunction-based methods are expensive and unsuitable for high-throughput calculations. Here, we devised a virtual screening approach where the molecules to be considered with advanced methods are pre-selected with increasingly more sophisticated filters that include the evaluation of the HOMO-LUMO exchange integral and approximate CASSCF calculations. A final set of 7 candidates (0.05% of the initial 15 000) were verified to possess inversion between singlet and triplet states with state-of-the-art multireference methods (MS-CASPT2). One of them is deemed of particular interest because it is unrelated to other proposals made in the literature.

9.
J Mater Chem C Mater ; 11(24): 8062-8073, 2023 Jun 22.
Article in English | MEDLINE | ID: mdl-37362027

ABSTRACT

In organic polymeric materials with mixed ionic and electronic conduction (OMIEC), the excess charge in doped polymers is very mobile and the dynamics of the polymer chain cannot be accurately described with a model including only fixed point charges. Ions and polymer are comparatively slower and a methodology to capture the correlated motions of excess charge and ions is currently unavailable. Considering a prototypical interface encountered in this type of materials, we constructed a scheme based on the combination of MD and QM/MM to evaluate the classical dynamics of polymer, water and ions, while allowing the excess charge of the polymer chains to rearrange following the external electrostatic potential. We find that the location of the excess charge varies substantially between chains. The excess charge changes across multiple timescales as a result of fast structural fluctuations and slow rearrangement of the polymeric chains. Our results indicate that such effects are likely important to describe the phenomenology of OMIEC, but additional features should be added to the model to enable the study of processes such as electrochemical doping.

10.
Animals (Basel) ; 13(10)2023 May 11.
Article in English | MEDLINE | ID: mdl-37238045

ABSTRACT

The use of contrast-enhanced ultrasound (CEUS) has been widely reported for reproductive imaging in humans and animals. This review aims to analyze the utility of CEUS in characterizing canine reproductive physiology and pathologies. In September 2022, a search for articles about CEUS in canine testicles, prostate, uterus, placenta, and mammary glands was conducted on PubMed and Scopus from 1990 to 2022, showing 36 total results. CEUS differentiated testicular abnormalities and neoplastic lesions, but it could not characterize tumors. In prostatic diseases, CEUS in dogs was widely studied in animal models for prostatic cancer treatment. In veterinary medicine, this diagnostic tool could distinguish prostatic adenocarcinomas. In ovaries, CEUS differentiated the follicular phases. In CEH-pyometra syndrome, it showed a different enhancement between endometrium and cysts, and highlighted angiogenesis. CEUS was shown to be safe in pregnant dogs and was able to assess normal and abnormal fetal-maternal blood flow and placental dysfunction. In normal mammary glands, CEUS showed vascularization only in diestrus, with differences between mammary glands. CEUS was not specific for neoplastic versus non-neoplastic masses and for benign tumors, except for complex carcinomas and neoplastic vascularization. Works on CEUS showed its usefulness in a wide spectrum of pathologies of this non-invasive, reliable diagnostic procedure.

11.
J Phys Chem Lett ; 14(17): 4119-4126, 2023 May 04.
Article in English | MEDLINE | ID: mdl-37129191

ABSTRACT

A sequence of quantum chemical computations of increasing accuracy was used in this work to identify molecules with small exciton reorganization energy (exciton-vibration coupling), of interest for light emitting devices and coherent exciton transport, starting from a set of ∼4500 known molecules. We validated an approximate computational approach based on single-point calculations of the force in the excited state, which was shown to be very efficient in identifying the most promising candidates. We showed that a simple descriptor based on the bond order could be used to find molecules with potentially small exciton reorganization energies without performing excited state calculations. A small set of chemically diverse molecules with a small exciton reorganization energy was analyzed in greater detail to identify common features leading to this property. Many such molecules display an A-B-A structure where the bonding/antibonding patterns in the fragments A are similar in HOMO and LUMO. Another group of molecules with small reorganization energy displays instead HOMO and LUMO with a strong nonbonding character.

13.
Vet Res Commun ; 47(2): 929-935, 2023 Jun.
Article in English | MEDLINE | ID: mdl-36331787

ABSTRACT

Apelin, a member of the adipokine family, is a novel endogenous peptide which regulates the male reproductive system of mammals by interacting with a specific receptor. Recent studies have highlighted that apelin may play a role in the regulation of reproduction by reducing testosterone production and inhibiting LH secretion. To the best of our knowledge, there is no available data on the presence of the apelin and its receptor in canine testes. Therefore, the aim of this study was to reveal the presence of apelin and evaluate its distribution in the canine testes using immunohistochemical and RT-PCR techniques. For this purpose, five fertile and healthy male dogs were subjected to elective orchiectomy. The immunohistochemical reaction revealed the presence of apelin and its receptor in the canine testes. Apelin was localized in spermatids and spermatozoa with a positive signal in the "acrosomal bodies". As regards the apelin receptor, a positive immunoreaction was detected in the cytoplasm of the cells localized near to the basal membrane of the seminiferous tubules and in the cytoplasm of Leydig cells. The RT-PCR analysis showed the presence of transcripts for apelin and apelin receptor in all of the samples under study. A 35kDa band confirmed apelin receptor protein expression in all of the samples analysed. In conclusion, the paracrine and endocrine role of apelin and its cognate receptor on male reproduction reported in humans and laboratory animals could also be hypothesized in dogs.


Subject(s)
Canidae , Testis , Humans , Dogs , Animals , Male , Apelin/genetics , Apelin Receptors/genetics , Reverse Transcriptase Polymerase Chain Reaction/veterinary , Spermatozoa
14.
Animals (Basel) ; 12(24)2022 Dec 08.
Article in English | MEDLINE | ID: mdl-36552388

ABSTRACT

The aim of this prospective clinical study was to evaluate the effectiveness of transdermal patches of buprenorphine as an alternative route for the management of perioperative pain in dogs undergoing a unilateral mastectomy. Our hypothesis was that the transdermal route would allow the obtainment of an analgesic plan comparable to that of the injectable administration. Twelve dogs were divided in two groups. In the BupreP group (six dogs), buprenorphine patches were applied 40 h before the start of the surgery, guaranteeing a dosage of 5−6 µg/kg/h. In the BupreI group (six dogs), 20 µg/kg of buprenorphine was administered intravenously 30 min before the induction of anesthesia, and this was repeated every 6 h for 24 h. The main physiological parameters, sedation scores (0 = no sedation; 11 = deep sedation), and pain scores were monitored from 30 min before the surgery to 24 h after the end of anesthesia. All p values < 0.05 were defined as statistically significant. Thirty minutes before the surgery, the sedation scores were higher in BupreI (score = 10) compared to the BupreP group (score = 1). Moreover, during the mastectomy, the mean arterial pressure significantly increased in both groups even if nobody required additional analgesia. In the postoperative period, the pain scores did not show statistically significant differences between the two groups, maintaining values below the pain threshold at all times of the study. In conclusion, the transdermal administration of buprenorphine could guarantee an analgesic quality equal to that of the injectable route.

15.
J Mater Chem C Mater ; 10(38): 14319-14333, 2022 Oct 06.
Article in English | MEDLINE | ID: mdl-36325475

ABSTRACT

We employ a rapid method for computing the electronic structure and orbital localization characteristics for a sample of 36 different polymer backbone structures. This relatively large sample derived from recent literature is used to identify the features of the monomer sequence that lead to greater charge delocalization and, potentially, greater charge mobility. Two characteristics contributing in equal measure to large localization length are the reduced variation of the coupling between adjacent monomers due to conformational fluctuations and the presence of just two monomers in the structural repeating units. For such polymers a greater mismatch between the HOMO orbitals of the fragments and, surprisingly, a smaller coupling between them is shown to favour greater delocalization of the orbitals. The underlying physical reasons for such observations are discussed and explicit and constructive design rules are proposed.

16.
J Mater Chem C Mater ; 10(42): 16126-16137, 2022 Nov 03.
Article in English | MEDLINE | ID: mdl-36387833

ABSTRACT

Having phase-separated conductive and less-conductive domains is a common morphology in semiconducting polymer blends as it exists in the case of PEDOT:PSS, which is a representative example with a wide range of applications. In this paper, we constructed atomistic models for the interface between the PEDOT-rich (conductive) grains and the PSS-rich (less-conductive) phase through molecular dynamics simulations. Our models are obtained from experimentally relevant compositions, based on precise force field parameters, and through a robust relaxation procedure. We show that both PEDOT-rich and PSS-rich phases consist of PEDOT lamellae embedded in PSS chains. The size of these lamellae depends on the PEDOT concentration in each phase and our model predictions are in quantitative agreement with the experimental data. Furthermore, our models suggest that neither the phases nor the interfaces are entirely connected by π-π stacking. Thus, inter-lamellae tunnelling is essential for both intra- and inter-grain charge transport. We also show that a small increase (≈8 wt%) in the PEDOT concentration results in rather larger lamellae sizes, considerably more oriented lamellae, and slightly better inter-lamellae connectivity, which result in enhanced intra-grain conductivity. Moreover, we show how enhancing phase separation between PEDOT-rich and PSS-rich domains (similar to the effect of polar co-solvents), i.e., pulling out PEDOT from the PSS-rich phase and adding it in the PEDOT-rich phase, highly enhances the intra-grain connectivity but decreases the inter-grain conduction paths through the interface. Our results explain how the marginal extra degree of phase separation (based on experimentally obtained values) could result in a great enhancement in the overall film conductivity.

17.
J Chem Phys ; 157(13): 134106, 2022 Oct 07.
Article in English | MEDLINE | ID: mdl-36209008

ABSTRACT

The internal conversion (IC) process from S1 to S0 and the intersystem crossing (ISC) transition from T1 to S0 are two essential processes in functional molecular material design. Despite their importance, it is currently impossible to evaluate the rate of these processes for a large set of molecules and, therefore, perform high-throughput virtual screening in large-scale data to gain more physical insight. In this work, we explore possible approaches to accelerate the calculations of IC and ISC rates based on a systematic reduction of the number of modes included in the computation and the study of the importance of the different parameters and the influence of their accuracy on the final result. The results reproduce the experimental trends with systematic errors that are ultimately due to the approximations of the theory. We noted that plausible results for ISC in planar molecules are only obtained by including the effect of Hertzberg-Teller coupling. Our method establishes the feasibility and expected accuracy of the computation of nonradiative rates in the virtual screening of molecular materials.

18.
J Phys Chem C Nanomater Interfaces ; 126(31): 13053-13061, 2022 Aug 11.
Article in English | MEDLINE | ID: mdl-35983311

ABSTRACT

We have created a dataset of 269 perovskite solar cells, containing information about their perovskite family, cell architecture, and multiple hole-transporting materials features, including fingerprints, additives, and structural and electronic features. We propose a predictive machine learning model that is trained on these data and can be used to screen possible candidate hole-transporting materials. Our approach allows us to predict the performance of perovskite solar cells with reasonable accuracy and is able to successfully identify most of the top-performing and lowest-performing hole-transporting materials in the dataset. We discuss the effect of data biases on the distribution of perovskite families/architectures on the model's accuracy and offer an analysis with a subset of the data to accurately study the effect of the hole-transporting material on the solar cell performance. Finally, we discuss some chemical fragments, like arylamine and aryloxy groups, which present a relatively large positive correlation with the efficiency of the cell, whereas other groups, like thiophene groups, display a negative correlation with power conversion efficiency (PCE).

19.
Digit Discov ; 1(3): 266-276, 2022 Jun 13.
Article in English | MEDLINE | ID: mdl-35769202

ABSTRACT

We try to determine if machine learning (ML) methods, applied to the discovery of new materials on the basis of existing data sets, have the power to predict completely new classes of compounds (extrapolating) or perform well only when interpolating between known materials. We introduce the leave-one-group-out cross-validation, in which the ML model is trained to explicitly perform extrapolations of unseen chemical families. This approach can be used across materials science and chemistry problems to improve the added value of ML predictions, instead of using extrapolative ML models that were trained with a regular cross-validation. We consider as a case study the problem of the discovery of non-fullerene acceptors because novel classes of acceptors are naturally classified into distinct chemical families. We show that conventional ML methods are not useful in practice when attempting to predict the efficiency of a completely novel class of materials. The approach proposed in this work increases the accuracy of the predictions to enable at least the categorization of materials with a performance above and below the median value.

20.
J Phys Chem Lett ; 13(24): 5530-5537, 2022 Jun 23.
Article in English | MEDLINE | ID: mdl-35695809

ABSTRACT

Knowledge of the full phonon spectrum is essential to accurately calculate the dynamic disorder (σ) and hole mobility (µh) in organic semiconductors (OSCs). However, most vibrational spectroscopy techniques under-measure the phonons, thus limiting the phonon validation. Here, we measure and model the full phonon spectrum using multiple spectroscopic techniques and predict µh using σ from only the Γ-point and the full Brillouin zone (FBZ). We find that only inelastic neutron scattering (INS) provides validation of all phonon modes, and that σ in a set of small molecule semiconductors can be miscalculated by up to 28% when comparing Γ-point against FBZ calculations. A subsequent mode analysis shows that many modes contribute to σ and that no single mode dominates. Our results demonstrate the importance of a thoroughly validated phonon calculation, and a need to develop design rules considering the full spectrum of phonon modes.

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