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1.
IEEE Trans Pattern Anal Mach Intell ; 46(2): 1305-1318, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38015704

ABSTRACT

3D morphable model (3DMM) fitting on 2D data is traditionally done via unconstrained optimization with regularization terms to ensure that the result is a plausible face shape and is consistent with a set of 2D landmarks. This paper presents inequality-constrained 3DMM fitting as the first alternative to regularization in optimization-based 3DMM fitting. Inequality constraints on the 3DMM's shape coefficients ensure face-like shapes without modifying the objective function for smoothness, thus allowing for more flexibility to capture person-specific shape details. Moreover, inequality constraints on landmarks increase robustness in a way that does not require per-image tuning. We show that the proposed method stands out with its ability to estimate person-specific face shapes by jointly fitting a 3DMM to multiple frames of a person. Further, when used with a robust objective function, namely gradient correlation, the method can work "in-the-wild" even with a 3DMM constructed from controlled data. Lastly, we show how to use the log-barrier method to efficiently implement the method. To our knowledge, we present the first 3DMM fitting framework that requires no learning yet is accurate, robust, and efficient. The absence of learning enables a generic solution that allows flexibility in the input image size, interchangeable morphable models, and incorporation of camera matrix.

2.
CEUR Workshop Proc ; 3359(ITAH): 48-57, 2023 Mar.
Article in English | MEDLINE | ID: mdl-38037663

ABSTRACT

Advances in computational behavior analysis via artificial intelligence (AI) promise to improve mental healthcare services by providing clinicians with tools to assist diagnosis or measurement of treatment outcomes. This potential has spurred an increasing number of studies in which automated pipelines predict diagnoses of mental health conditions. However, a fundamental question remains unanswered: How do the predictions of the AI algorithms correspond and compare with the predictions of humans? This is a critical question if AI technology is to be used as an assistive tool, because the utility of an AI algorithm would be negligible if it provides little information beyond what clinicians can readily infer. In this paper, we compare the performance of 19 human raters (8 autism experts and 11 non-experts) and that of an AI algorithm in terms of predicting autism diagnosis from short (3-minute) videos of N = 42 participants in a naturalistic conversation. Results show that the AI algorithm achieves an average accuracy of 80.5%, which is comparable to that of clinicians with expertise in autism (83.1%) and clinical research staff without specialized expertise (78.3%). Critically, diagnoses that were inaccurately predicted by most humans (experts and non-experts, alike) were typically correctly predicted by AI. Our results highlight the potential of AI as an assistive tool that can augment clinician diagnostic decision-making.

3.
Article in English | MEDLINE | ID: mdl-38737297

ABSTRACT

The standard benchmark metric for 3D face reconstruction is the geometric error between reconstructed meshes and the ground truth. Nearly all recent reconstruction methods are validated on real ground truth scans, in which case one needs to establish point correspondence prior to error computation, which is typically done with the Chamfer (i.e., nearest neighbor) criterion. However, a simple yet fundamental question have not been asked: Is the Chamfer error an appropriate and fair benchmark metric for 3D face reconstruction? More generally, how can we determine which error estimator is a better benchmark metric? We present a meta-evaluation framework that uses synthetic data to evaluate the quality of a geometric error estimator as a benchmark metric for face reconstruction. Further, we use this framework to experimentally compare four geometric error estimators. Results show that the standard approach not only severely underestimates the error, but also does so inconsistently across reconstruction methods, to the point of even altering the ranking of the compared methods. Moreover, although non-rigid ICP leads to a metric with smaller estimation bias, it could still not correctly rank all compared reconstruction methods, and is significantly more time consuming than Chamfer. In sum, we show several issues present in the current benchmarking and propose a procedure using synthetic data to address these issues.

4.
Article in English | MEDLINE | ID: mdl-38699395

ABSTRACT

Autism spectrum disorder (ASD) is a neurodevelopmental condition characterized in part by difficulties in verbal and nonverbal social communication. Evidence indicates that autistic people, compared to neurotypical peers, exhibit differences in head movements, a key form of nonverbal communication. Despite the crucial role of head movements in social communication, research on this nonverbal cue is relatively scarce compared to other forms of nonverbal communication, such as facial expressions and gestures. There is a need for scalable, reliable, and accurate instruments for measuring head movements directly within the context of social interactions. In this study, we used computer vision and machine learning to examine the head movement patterns of neurotypical and autistic individuals during naturalistic, face-to-face conversations, at both the individual (monadic) and interpersonal (dyadic) levels. Our model predicts diagnostic status using dyadic head movement data with an accuracy of 80%, highlighting the value of head movement as a marker of social communication. The monadic data pipeline had lower accuracy (69.2%) compared to the dyadic approach, emphasizing the importance of studying back-and-forth social communication cues within a true social context. The proposed classifier is not intended for diagnostic purposes, and future research should replicate our findings in larger, more representative samples.

5.
J Neurodev Disord ; 14(1): 39, 2022 06 24.
Article in English | MEDLINE | ID: mdl-35751013

ABSTRACT

BACKGROUND: Numerous genes are implicated in autism spectrum disorder (ASD). ASD encompasses a wide-range and severity of symptoms and co-occurring conditions; however, the details of how genetic variation contributes to phenotypic differences are unclear. This creates a challenge for translating genetic evidence into clinically useful knowledge. Sleep disturbances are particularly prevalent co-occurring conditions in ASD, and genetics may inform treatment. Identifying convergent mechanisms with evidence for dysfunction that connect ASD and sleep biology could help identify better treatments for sleep disturbances in these individuals. METHODS: To identify mechanisms that influence risk for ASD and co-occurring sleep disturbances, we analyzed whole exome sequence data from individuals in the Simons Simplex Collection (n = 2380). We predicted protein damaging variants (PDVs) in genes currently implicated in either ASD or sleep duration in typically developing children. We predicted a network of ASD-related proteins with direct evidence for interaction with sleep duration-related proteins encoded by genes with PDVs. Overrepresentation analyses of Gene Ontology-defined biological processes were conducted on the resulting gene set. We calculated the likelihood of dysfunction in the top overrepresented biological process. We then tested if scores reflecting genetic dysfunction in the process were associated with parent-reported sleep duration. RESULTS: There were 29 genes with PDVs in the ASD dataset where variation was reported in the literature to be associated with both ASD and sleep duration. A network of 108 proteins encoded by ASD and sleep duration candidate genes with PDVs was identified. The mechanism overrepresented in PDV-containing genes that encode proteins in the interaction network with the most evidence for dysfunction was cerebral cortex development (GO:0,021,987). Scores reflecting dysfunction in this process were associated with sleep durations; the largest effects were observed in adolescents (p = 4.65 × 10-3). CONCLUSIONS: Our bioinformatic-driven approach detected a biological process enriched for genes encoding a protein-protein interaction network linking ASD gene products with sleep duration gene products where accumulation of potentially damaging variants in individuals with ASD was associated with sleep duration as reported by the parents. Specifically, genetic dysfunction impacting development of the cerebral cortex may affect sleep by disrupting sleep homeostasis which is evidenced to be regulated by this brain region. Future functional assessments and objective measurements of sleep in adolescents with ASD could provide the basis for more informed treatment of sleep problems in these individuals.


Subject(s)
Autism Spectrum Disorder , Biological Phenomena , Sleep Wake Disorders , Adolescent , Autism Spectrum Disorder/complications , Autism Spectrum Disorder/genetics , Child , Exome/genetics , Humans , Sleep Wake Disorders/complications , Sleep Wake Disorders/genetics , Exome Sequencing
6.
J Neurodev Disord ; 14(1): 32, 2022 05 23.
Article in English | MEDLINE | ID: mdl-35606697

ABSTRACT

BACKGROUND: Autism spectrum disorder (ASD) is a complex neurodevelopmental condition characterized by restricted, repetitive behavior, and impaired social communication and interactions. However, significant challenges remain in diagnosing and subtyping ASD due in part to the lack of a validated, standardized vocabulary to characterize clinical phenotypic presentation of ASD. Although the human phenotype ontology (HPO) plays an important role in delineating nuanced phenotypes for rare genetic diseases, it is inadequate to capture characteristic of behavioral and psychiatric phenotypes for individuals with ASD. There is a clear need, therefore, for a well-established phenotype terminology set that can assist in characterization of ASD phenotypes from patients' clinical narratives. METHODS: To address this challenge, we used natural language processing (NLP) techniques to identify and curate ASD phenotypic terms from high-quality unstructured clinical notes in the electronic health record (EHR) on 8499 individuals with ASD, 8177 individuals with non-ASD psychiatric disorders, and 8482 individuals without a documented psychiatric disorder. We further performed dimensional reduction clustering analysis to subgroup individuals with ASD, using nonnegative matrix factorization method. RESULTS: Through a note-processing pipeline that includes several steps of state-of-the-art NLP approaches, we identified 3336 ASD terms linking to 1943 unique medical concepts, which represents among the largest ASD terminology set to date. The extracted ASD terms were further organized in a formal ontology structure similar to the HPO. Clustering analysis showed that these terms could be used in a diagnostic pipeline to differentiate individuals with ASD from individuals with other psychiatric disorders. CONCLUSION: Our ASD phenotype ontology can assist clinicians and researchers in characterizing individuals with ASD, facilitating automated diagnosis, and subtyping individuals with ASD to facilitate personalized therapeutic decision-making.


Subject(s)
Autism Spectrum Disorder , Natural Language Processing , Autism Spectrum Disorder/diagnosis , Autism Spectrum Disorder/genetics , Electronic Health Records , Humans , Phenotype , Vocabulary
7.
ICMI'22 Companion (2022) ; 2022: 185-195, 2022 Nov.
Article in English | MEDLINE | ID: mdl-37975062

ABSTRACT

Advances in computational behavior analysis have the potential to increase our understanding of behavioral patterns and developmental trajectories in neurotypical individuals, as well as in individuals with mental health conditions marked by motor, social, and emotional difficulties. This study focuses on investigating how head movement patterns during face-to-face conversations vary with age from childhood through adulthood. We rely on computer vision techniques due to their suitability for analysis of social behaviors in naturalistic settings, since video data capture can be unobtrusively embedded within conversations between two social partners. The methods in this work include unsupervised learning for movement pattern clustering, and supervised classification and regression as a function of age. The results demonstrate that 3-minute video recordings of head movements during conversations show patterns that distinguish between participants that are younger vs. older than 12 years with 78% accuracy. Additionally, we extract relevant patterns of head movement upon which the age distinction was determined by our models.

8.
IEEE Trans Biomed Eng ; 68(12): 3713-3724, 2021 12.
Article in English | MEDLINE | ID: mdl-34061731

ABSTRACT

It is well-known that expanding glioblastomas typically induce significant deformations of the surrounding parenchyma (i.e., the so-called "mass effect"). In this study, we evaluate the performance of three mathematical models of tumor growth: 1) a reaction-diffusion-advection model which accounts for mass effect (RDAM), 2) a reaction-diffusion model with mass effect that is consistent only in the case of small deformations (RDM), and 3) a reaction-diffusion model that does not include the mass effect (RD). The models were calibrated with magnetic resonance imaging (MRI) data obtained during tumor development in a murine model of glioma (n = 9). We obtained T2-weighted and contrast-enhanced T1-weighted MRI at 6 time points over 10 days to determine the spatiotemporal variation in the mass effect and the volume fraction of tumor cells, respectively. We calibrated the three models using data 1) at the first four, 2) only at the first and fourth, and 3) only at the third and fourth time points. Each of these calibrations were run forward in time to predict the volume fraction of tumor cells at the conclusion of the experiment. The diffusion coefficient for the RDAM model (median of 10.65 × 10 -3 mm 2· d -1) is significantly less than those for the RD and RDM models (17.46 × 10 -3 mm 2· d -1 and 19.38 × 10 -3 mm 2· d -1, respectively). The error in the tumor volume fraction for the RD, RDM, and RDAM models have medians of 40.2%, 32.1%, and 44.7%, respectively, for the calibration using data from the first four time points. The RDM model most accurately predicts tumor growth, while the RDAM model presents the least variation in its estimates of the diffusion coefficient and proliferation rate. This study demonstrates that the mathematical models capture both tumor development and mass effect observed in experiments.


Subject(s)
Brain Neoplasms , Glioblastoma , Glioma , Animals , Brain Neoplasms/diagnostic imaging , Diffusion Magnetic Resonance Imaging , Glioblastoma/diagnostic imaging , Glioma/diagnostic imaging , Magnetic Resonance Imaging , Mice
9.
J Child Psychol Psychiatry ; 62(10): 1236-1245, 2021 10.
Article in English | MEDLINE | ID: mdl-33826159

ABSTRACT

BACKGROUND: Diagnostic shifts at early ages may provide invaluable insights into the nature of separation between autism spectrum disorder (ASD) and typical development. Recent conceptualizations of ASD suggest the condition is only fuzzily separated from non-ASD, with intermediate cases between the two. These intermediate cases may shift along a transition region over time, leading to apparent instability of diagnosis. METHODS: We used a cohort of children with high ASD risk, by virtue of having an older sibling with ASD, assessed at 24 months (N = 212) and 36 months (N = 191). We applied machine learning to empirically characterize the classification boundary between ASD and non-ASD, using variables quantifying developmental and adaptive skills. We computed the distance of children to the classification boundary. RESULTS: Children who switched diagnostic labels from 24 to 36 months, in both directions, (dynamic group) had intermediate phenotypic profiles. They were closer to the classification boundary compared to children who had stable diagnoses, both at 24 months (Cohen's d = .52) and at 36 months (d = .75). The magnitude of change in distance between the two time points was similar for the dynamic and stable groups (Cohen's d = .06), and diagnostic shifts were not associated with a large change. At the individual level, a few children in the dynamic group showed substantial change. CONCLUSIONS: Our results suggested that a diagnostic shift was largely due to a slight movement within a transition region between ASD and non-ASD. This fact highlights the need for more vigilant surveillance and intervention strategies. Young children with intermediate phenotypes may have an increased susceptibility to gain or lose their diagnosis at later ages, calling attention to the inherently dynamic nature of early ASD diagnoses.


Subject(s)
Autism Spectrum Disorder , Autism Spectrum Disorder/diagnosis , Child, Preschool , Cohort Studies , Early Diagnosis , Humans , Phenotype , Siblings
10.
ICMI '21 Companion (2021) ; 2021: 362-370, 2021 Oct.
Article in English | MEDLINE | ID: mdl-38037600

ABSTRACT

Motor imitation is a critical developmental skill area that has been strongly and specifically linked to autism spectrum disorder (ASD). However, methodological variability across studies has precluded a clear understanding of the extent and impact of imitation differences in ASD, underscoring a need for more automated, granular measurement approaches that offer greater precision and consistency. In this paper, we investigate the utility of a novel motor imitation measurement approach for accurately differentiating between youth with ASD and typically developing (TD) youth. Findings indicate that youth with ASD imitate body movements significantly differently from TD youth upon repeated administration of a brief, simple task, and that a classifier based on body coordination features derived from this task can differentiate between autistic and TD youth with 82% accuracy. Our method illustrates that group differences are driven not only by interpersonal coordination with the imitated video stimulus, but also by intrapersonal coordination. Comparison of 2D and 3D tracking shows that both approaches achieve the same classification accuracy of 82%, which is highly promising with regard to scalability for larger samples and a range of non-laboratory settings. This work adds to a rapidly growing literature highlighting the promise of computational behavior analysis for detecting and characterizing motor differences in ASD and identifying potential motor biomarkers.

11.
Comput Vis ECCV ; 12354: 433-449, 2020.
Article in English | MEDLINE | ID: mdl-33135013

ABSTRACT

Fitting 3D morphable models (3DMMs) on faces is a well-studied problem, motivated by various industrial and research applications. 3DMMs express a 3D facial shape as a linear sum of basis functions. The resulting shape, however, is a plausible face only when the basis coefficients take values within limited intervals. Methods based on unconstrained optimization address this issue with a weighted ℓ 2 penalty on coefficients; however, determining the weight of this penalty is difficult, and the existence of a single weight that works universally is questionable. We propose a new formulation that does not require the tuning of any weight parameter. Specifically, we formulate 3DMM fitting as an inequality-constrained optimization problem, where the primary constraint is that basis coefficients should not exceed the interval that is learned when the 3DMM is constructed. We employ additional constraints to exploit sparse landmark detectors, by forcing the facial shape to be within the error bounds of a reliable detector. To enable operation "in-the-wild", we use a robust objective function, namely Gradient Correlation. Our approach performs comparably with deep learning (DL) methods on "in-the-wild" data that have inexact ground truth, and better than DL methods on more controlled data with exact ground truth. Since our formulation does not require any learning, it enjoys a versatility that allows it to operate with multiple frames of arbitrary sizes. This study's results encourage further research on 3DMM fitting with inequality-constrained optimization methods, which have been unexplored compared to unconstrained methods.

12.
Article in English | MEDLINE | ID: mdl-32968342

ABSTRACT

Finding the largest subset of sequences (i.e., time series) that are correlated above a certain threshold, within large datasets, is of significant interest for computer vision and pattern recognition problems across domains, including behavior analysis, computational biology, neuroscience, and finance. Maximal clique algorithms can be used to solve this problem, but they are not scalable. We present an approximate, but highly efficient and scalable, method that represents the search space as a union of sets called ϵ-expanded clusters, one of which is theoretically guaranteed to contain the largest subset of synchronized sequences. The method finds synchronized sets by fitting a Euclidean ball on ϵ-expanded clusters, using Jung's theorem. We validate the method on data from the three distinct domains of facial behavior analysis, finance, and neuroscience, where we respectively discover the synchrony among pixels of face videos, stock market item prices, and dynamic brain connectivity data. Experiments show that our method produces results comparable to, but up to 300 times faster than, maximal clique algorithms, with speed gains increasing exponentially with the number of input sequences.

13.
Article in English | MEDLINE | ID: mdl-32921968

ABSTRACT

Separating facial pose and expression within images requires a camera model for 3D-to-2D mapping. The weak perspective (WP) camera has been the most popular choice; it is the default, if not the only option, in state-of-the-art facial analysis methods and software. WP camera is justified by the supposition that its errors are negligible when the subjects are relatively far from the camera, yet this claim has never been tested despite nearly 20 years of research. This paper critically examines the suitability of WP camera for separating facial pose and expression. First, we theoretically show that WP causes pose-expression ambiguity, as it leads to estimation of spurious expressions. Next, we experimentally quantify the magnitude of spurious expressions. Finally, we test whether spurious expressions have detrimental effects on a common facial analysis application, namely Action Unit (AU) detection. Contrary to conventional wisdom, we find that severe pose-expression ambiguity exists even when subjects are not close to the camera, leading to large false positive rates in AU detection. We also demonstrate that the magnitude and characteristics of spurious expressions depend on the point distribution model used to model the expressions. Our results suggest that common assumptions about WP need to be revisited in facial expression modeling, and that facial analysis software should encourage and facilitate the use of the true camera model whenever possible.

14.
Biol Psychiatry ; 88(1): 70-82, 2020 07 01.
Article in English | MEDLINE | ID: mdl-32201044

ABSTRACT

Brain aging is a complex process that includes atrophy, vascular injury, and a variety of age-associated neurodegenerative pathologies, together determining an individual's course of cognitive decline. While Alzheimer's disease and related dementias contribute to the heterogeneity of brain aging, these conditions themselves are also heterogeneous in their clinical presentation, progression, and pattern of neural injury. We reviewed studies that leveraged data-driven approaches to examining heterogeneity in Alzheimer's disease and related dementias, with a principal focus on neuroimaging studies exploring subtypes of regional neurodegeneration patterns. Over the past decade, the steadily increasing wealth of clinical, neuroimaging, and molecular biomarker information collected within large-scale observational cohort studies has allowed for a richer understanding of the variability of disease expression within the aging and Alzheimer's disease and related dementias continuum. Moreover, the availability of these large-scale datasets has supported the development and increasing application of clustering techniques for studying disease heterogeneity in a data-driven manner. In particular, data-driven studies have led to new discoveries of previously unappreciated disease subtypes characterized by distinct neuroimaging patterns of regional neurodegeneration, which are paralleled by heterogeneous profiles of pathological, clinical, and molecular biomarker characteristics. Incorporating these findings into novel frameworks for more differentiated disease stratification holds great promise for improving individualized diagnosis and prognosis of expected clinical progression, and provides opportunities for development of precision medicine approaches for therapeutic intervention. We conclude with an account of the principal challenges associated with data-driven heterogeneity analyses and outline avenues for future developments in the field.


Subject(s)
Alzheimer Disease , Cognitive Dysfunction , Alzheimer Disease/diagnostic imaging , Alzheimer Disease/pathology , Atrophy/pathology , Brain/diagnostic imaging , Brain/pathology , Cognitive Dysfunction/pathology , Humans , Neuroimaging
15.
Behav Res Methods ; 52(4): 1516-1527, 2020 08.
Article in English | MEDLINE | ID: mdl-31907754

ABSTRACT

Face identity recognition is important for social interaction and is impaired in a range of clinical disorders, including several neurodevelopmental disorders. The Benton Facial Recognition Test (BFRT; Benton & Van Allen, 1968), a widely used assessment of identity recognition, is the only standardized test of face identity perception, as opposed to face memory, that has been normed on children and adolescents. However, the existing norms for the BFRT are suboptimal, with several ages not represented and no established time limit (which can lead to inflated scores by allowing individuals with prosopagnosia to use feature matching). Here we address these issues with a large normative dataset of children and adolescents (ages 5-17, N = 398) and adults (ages 18-55; N = 120) who completed a time-limited version of the BFRT. Using Bayesian regression, we demonstrate that face identity perception increases asymptotically from childhood through adulthood, and provide continuous norms based on age and sex that can be used to calculate standard scores. We show that our time limit of 16 seconds per item yields scores comparable to the existing norms without time limits from the non-prosopagnostic samples. We also find that females (N = 156) score significantly higher than males (N = 362), supporting the existence of a female superiority effect for face identification. Overall, these results provide more robust norms for the BFRT and promote future research on face identity perception in developmental populations.


Subject(s)
Facial Recognition , Prosopagnosia , Adolescent , Adult , Bayes Theorem , Child , Child, Preschool , Face , Female , Humans , Male , Memory , Middle Aged , Neuropsychological Tests , Pattern Recognition, Visual , Young Adult
16.
Biometrics ; 76(1): 257-269, 2020 03.
Article in English | MEDLINE | ID: mdl-31350904

ABSTRACT

The field of neuroimaging dedicated to mapping connections in the brain is increasingly being recognized as key for understanding neurodevelopment and pathology. Networks of these connections are quantitatively represented using complex structures, including matrices, functions, and graphs, which require specialized statistical techniques for estimation and inference about developmental and disorder-related changes. Unfortunately, classical statistical testing procedures are not well suited to high-dimensional testing problems. In the context of global or regional tests for differences in neuroimaging data, traditional analysis of variance (ANOVA) is not directly applicable without first summarizing the data into univariate or low-dimensional features, a process that might mask the salient features of high-dimensional distributions. In this work, we consider a general framework for two-sample testing of complex structures by studying generalized within-group and between-group variances based on distances between complex and potentially high-dimensional observations. We derive an asymptotic approximation to the null distribution of the ANOVA test statistic, and conduct simulation studies with scalar and graph outcomes to study finite sample properties of the test. Finally, we apply our test to our motivating study of structural connectivity in autism spectrum disorder.


Subject(s)
Biometry/methods , Connectome/statistics & numerical data , Adolescent , Analysis of Variance , Autism Spectrum Disorder/diagnostic imaging , Child , Computer Simulation , Data Interpretation, Statistical , Diffusion Tensor Imaging/statistics & numerical data , Humans
17.
Mol Autism ; 10: 46, 2019.
Article in English | MEDLINE | ID: mdl-31867092

ABSTRACT

Background: Autism spectrum disorder (ASD) is a heterogeneous neurodevelopmental condition. The degree to which the brain development in ASD deviates from typical brain development, and how this deviation relates to observed behavioral outcomes at the individual level are not well-studied. We hypothesize that the degree of deviation from typical brain development of an individual with ASD would relate to observed symptom severity. Methods: The developmental changes in anatomical (cortical thickness, surface area, and volume) and diffusion metrics (fractional anisotropy and apparent diffusion coefficient) were compared between a sample of ASD (n = 247) and typically developing children (TDC) (n = 220) aged 6-25. Machine learning was used to predict age (brain age) from these metrics in the TDC sample, to define a normative model of brain development. This model was then used to compute brain age in the ASD sample. The difference between chronological age and brain age was considered a developmental deviation index (DDI), which was then correlated with ASD symptom severity. Results: Machine learning model trained on all five metrics accurately predicted age in the TDC (r = 0.88) and the ASD (r = 0.85) samples, with dominant contributions to the model from the diffusion metrics. Within the ASD group, the DDI derived from fractional anisotropy was correlated with ASD symptom severity (r = - 0.2), such that individuals with the most advanced brain age showing the lowest severity, and individuals with the most delayed brain age showing the highest severity. Limitations: This work investigated only linear relationships between five specific brain metrics and only one measure of ASD symptom severity in a limited age range. Reported effect sizes are moderate. Further work is needed to investigate developmental differences in other age ranges, other aspects of behavior, other neurobiological measures, and in an independent sample before results can be clinically applicable. Conclusions: Findings demonstrate that the degree of deviation from typical brain development relates to ASD symptom severity, partially accounting for the observed heterogeneity in ASD. Our approach enables characterization of each individual with reference to normative brain development and identification of distinct developmental subtypes, facilitating a better understanding of developmental heterogeneity in ASD.


Subject(s)
Autism Spectrum Disorder/pathology , Brain/growth & development , Brain/pathology , Severity of Illness Index , Adolescent , Adult , Anisotropy , Diffusion , Female , Humans , Male , Multivariate Analysis , Sex Characteristics , Young Adult
18.
Neuroimage ; 199: 93-104, 2019 10 01.
Article in English | MEDLINE | ID: mdl-31141738

ABSTRACT

The brain can be considered as an information processing network, where complex behavior manifests as a result of communication between large-scale functional systems such as visual and default mode networks. As the communication between brain regions occurs through underlying anatomical pathways, it is important to define a "traffic pattern" that properly describes how the regions exchange information. Empirically, the choice of the traffic pattern can be made based on how well the functional connectivity between regions matches the structural pathways equipped with that traffic pattern. In this paper, we present a multimodal connectomics paradigm utilizing graph matching to measure similarity between structural and functional connectomes (derived from dMRI and fMRI data) at node, system, and connectome level. Through an investigation of the brain's structure-function relationship over a large cohort of 641 healthy developmental participants aged 8-22 years, we demonstrate that communicability as the traffic pattern describes the functional connectivity of the brain best, with large-scale systems having significant agreement between their structural and functional connectivity patterns. Notably, matching between structural and functional connectivity for the functionally specialized modular systems such as visual and motor networks are higher as compared to other more integrated systems. Additionally, we show that the negative functional connectivity between the default mode network (DMN) and motor, frontoparietal, attention, and visual networks is significantly associated with its underlying structural connectivity, highlighting the counterbalance between functional activation patterns of DMN and other systems. Finally, we investigated sex difference and developmental changes in brain and observed that similarity between structure and function changes with development.


Subject(s)
Brain/anatomy & histology , Brain/physiology , Connectome/methods , Magnetic Resonance Imaging/methods , Nerve Net/anatomy & histology , Nerve Net/physiology , Adolescent , Age Factors , Brain/diagnostic imaging , Child , Cross-Sectional Studies , Diffusion Magnetic Resonance Imaging/methods , Female , Humans , Male , Nerve Net/diagnostic imaging , Sex Factors , Young Adult
19.
Article in English | MEDLINE | ID: mdl-30777604

ABSTRACT

BACKGROUND: Children with autism spectrum disorder (ASD) and co-occurring attention-deficit/hyperactivity disorder (ADHD) symptoms have worse functional outcomes and treatment response than those without ADHD symptoms. There is limited knowledge of the neurobiology of ADHD symptoms in ASD. Here, we test the hypothesis that aberrant functional connectivity of two large-scale executive brain networks implicated in ADHD-the frontoparietal and salience/ventral attention networks-also play a role in ADHD symptoms in ASD. METHODS: We compared resting-state functional connectivity of the two executive brain networks in children with ASD (n = 77) and typically developing control children (n = 82). These two executive brain networks comprise five subnetworks (three frontoparietal, two salience/ventral attention). After identifying aberrant functional connections among subnetworks, we examined dimensional associations with parent-reported ADHD symptoms. RESULTS: Weaker functional connectivity in ASD was present within and between the frontoparietal and salience/ventral attention subnetworks. Decreased functional connectivity within a single salience/ventral attention subnetwork, as well as between two frontoparietal subnetworks, significantly correlated with ADHD symptoms. Furthermore, follow-up linear regressions demonstrated that the salience/ventral attention and frontoparietal subnetworks explain unique variance in ADHD symptoms. These executive brain network-ADHD symptom relationships remained significant after controlling for ASD symptoms. Finally, specificity was also demonstrated through the use of a control brain network (visual) and a control co-occurring symptom domain (anxiety). CONCLUSIONS: The present findings provide novel evidence that both frontoparietal and salience/ventral attention networks' weaker connectivities are linked to ADHD symptoms in ASD. Moreover, co-occurring ADHD in the context of ASD is a source of meaningful neural heterogeneity in ASD.


Subject(s)
Attention Deficit Disorder with Hyperactivity/physiopathology , Autism Spectrum Disorder/physiopathology , Cerebral Cortex/physiopathology , Connectome , Executive Function/physiology , Nerve Net/physiopathology , Adolescent , Attention Deficit Disorder with Hyperactivity/diagnostic imaging , Autism Spectrum Disorder/diagnostic imaging , Cerebral Cortex/diagnostic imaging , Child , Female , Humans , Magnetic Resonance Imaging , Male , Nerve Net/diagnostic imaging
20.
Comput Methods Programs Biomed ; 161: 15-24, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29852958

ABSTRACT

BACKGROUND AND OBJECTIVE: Spiral waves are phenomena observed in cardiac tissue especially during fibrillatory activities. Spiral waves are revealed through in-vivo and in-vitro studies using high density mapping that requires special experimental setup. Also, in-silico spiral wave analysis and classification is performed using membrane potentials from entire tissue. In this study, we report a characterization approach that identifies spiral wave behaviors using intracardiac electrogram (EGM) readings obtained with commonly used multipolar diagnostic catheters that perform localized but high-resolution readings. Specifically, the algorithm is designed to distinguish between stationary, meandering, and break-up rotors. METHODS: The clustering and classification algorithms are tested on simulated data produced using a phenomenological 2D model of cardiac propagation. For EGM measurements, unipolar-bipolar EGM readings from various locations on tissue using two catheter types are modeled. The distance measure between spiral behaviors are assessed using normalized compression distance (NCD), an information theoretical distance. NCD is a universal metric in the sense it is solely based on compressibility of dataset and not requiring feature extraction. We also introduce normalized FFT distance (NFFTD) where compressibility is replaced with a FFT parameter. RESULTS: Overall, outstanding clustering performance was achieved across varying EGM reading configurations. We found that effectiveness in distinguishing was superior in case of NCD than NFFTD. We demonstrated that distinct spiral activity identification on a behaviorally heterogeneous tissue is also possible. CONCLUSIONS: This report demonstrates a theoretical validation of clustering and classification approaches that provide an automated mapping from EGM signals to assessment of spiral wave behaviors and hence offers a potential mapping and analysis framework for cardiac tissue wavefront propagation patterns.


Subject(s)
Cluster Analysis , Electrophysiologic Techniques, Cardiac , Medical Informatics/methods , Signal Processing, Computer-Assisted , Action Potentials , Algorithms , Atrial Fibrillation/diagnosis , Computer Simulation , Data Compression , Electromagnetic Phenomena , Electronic Data Processing , Heart Atria , Humans , Models, Cardiovascular
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