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1.
J Comput Chem ; 44(31): 2374-2390, 2023 Dec 05.
Article in English | MEDLINE | ID: mdl-37589287

ABSTRACT

This work reports on a spin-pure configuration-based implementation of the heatbath configuration interaction (HCI) algorithm for selective configuration interaction. Besides the obvious advantage of being spin-pure, the presented method combines the compactness of the configurational ansatz with the known efficiency of the HCI algorithm and a variety of algorithmic and conceptual ideas to achieve a high level of performance. In particular, through pruning of the selected configurational space after HCI selection by means of a more strict criterion, a more compact wavefunction representation is obtained. Moreover, the underlying logic of the method allows us to minimize the number of redundant matrix-matrix multiplications while making use of just-in-time compilation to achieve fast diagonalization of the Hamiltonian. The critical search for 2-electron connections within the configurational space is facilitated by a tree-based representation thereof as suggested previously by Gopal et al. Usage of a prefix-based parallelization and batching during the calculation of the PT2-correction leads to a good load balancing and significantly reduced memory requirements for these critical steps of the calculation. In this way, the need for a semistochastic approach to the PT2 correction is avoided even for large configurational spaces. Finally, several test-cases are discussed to demonstrate the strengths and weaknesses of the presented method.

2.
Chemistry ; 28(42): e202200974, 2022 Jul 26.
Article in English | MEDLINE | ID: mdl-35510557

ABSTRACT

Hypervalent bromine(III) reagents possess a higher electrophilicity and a stronger oxidizing power compared to their iodine(III) counterparts. Despite the superior reactivity, bromine(III) reagents have a reputation of hard-to-control and difficult-to-synthesize compounds. This is partly due to their low stability, and partly because their synthesis typically relies on the use of the toxic and highly reactive BrF3 as a precursor. Recently, we proposed chelation-stabilized hypervalent bromine(III) compounds as a possible solution to both problems. First, they can be conveniently prepared by electro-oxidation of the corresponding bromoarenes. Second, the chelation endows bromine(III) species with increased stability while retaining sufficient reactivity, comparable to that of iodine(III) counterparts. Finally, their intrinsic reactivity can be unlocked in the presence of acids. Herein, an in-depth mechanistic study of both the electrochemical generation and the reactivity of the bromine(III) compounds is disclosed, with implications for known applications and future developments in the field.

3.
J Phys Chem A ; 124(38): 7756-7767, 2020 Sep 24.
Article in English | MEDLINE | ID: mdl-32845147

ABSTRACT

In this work, the photochemically and thermally induced isomerization of multiple donor-acceptor Stenhouse adducts (DASAs) of the first, second, and third generation is studied by means of state-of-the-art ab initio electronic structure methods leading to new insight into multiple facets of the reaction mechanism. Importantly, prior to any studies of the reaction mechanism, a set of test calculations demonstrate the suitability of the applied ADC(2) and CC2 methods in the present context. An important aspect in this regard is the availability of electronic energies and gradients under implicit consideration of solvent effects. On the basis of calculated reaction energies and barriers as well as a thorough analysis of the wave function compositions, interesting features of the reaction mechanism are deduced. For example, the closed form of second- and third-generation DASAs can be significantly stabilized by π - π interactions between the donor and acceptor termini when certain structural requirements are fulfilled. The central point of this work concerns the delicate balance between neutral and zwitterionic resonance structures that governs the relative barrier height for the crucial C2-C3 and C3-C4 bond rotations. Finally, a set of calculations on yet unreported derivatives highlights how this balance and hence the barrier heights can be tuned through variation of the donor-acceptor strength as well as the solvent polarity.

4.
J Org Chem ; 85(12): 8029-8044, 2020 Jun 19.
Article in English | MEDLINE | ID: mdl-32456428

ABSTRACT

The facilitation of redox-neutral reactions by electrochemical injection of holes and electrons, also known as "electrochemical catalysis", is a little explored approach that has the potential to expand the scope of electrosynthesis immensely. To systematically improve existing protocols and to pave the way toward new developments, a better understanding of the underlying principles is crucial. In this context, we have studied the Newman-Kwart rearrangement of O-arylthiocarbamates to the corresponding S-aryl derivatives, the key step in the synthesis of thiophenols from the corresponding phenols. This transformation is a particularly useful example because the conventional method requires temperatures up to 300 °C, whereas electrochemical catalysis facilitates the reaction at room temperature. A combined experimental-quantum chemical approach revealed several reaction channels and rendered an explanation for the relationship between the structure and reactivity. Furthermore, it is shown how rapid cyclic voltammetry measurements can serve as a tool to predict the feasibility for specific substrates. The study also revealed distinct parallels to photoredox-catalyzed reactions, in which back-electron transfer and chain propagation are competing pathways.

5.
Chem Commun (Camb) ; 50(31): 4096-8, 2014 Apr 21.
Article in English | MEDLINE | ID: mdl-24619026

ABSTRACT

Benzoselenadiazole-containing inhibitors of protein kinases were constructed and their capability to emit phosphorescence in the kinase-bound state was established. Labelling of the inhibitors with a red fluorescent dye led to sensitive responsive photoluminescent probes for protein kinase CK2 that emitted red light with a long (microsecond-scale) decay time upon excitation of the probes with a pulse of near-UV light.


Subject(s)
Azoles/chemistry , Casein Kinase II/chemistry , Coloring Agents/chemistry , Organoselenium Compounds/chemistry , Peptides/chemistry , Azoles/radiation effects , Coloring Agents/radiation effects , Cyclic AMP-Dependent Protein Kinases/chemistry , Light , Organoselenium Compounds/radiation effects , Peptides/radiation effects , Proto-Oncogene Proteins c-pim-1/chemistry
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