Integrative phylogenetic, phylogeographic and morphological characterisation of the Unio crassus species complex reveals cryptic diversity with important conservation implications.

The global decline of freshwater mussels and their crucial ecological services highlight the need to understand their phylogeny, phylogeography and patterns of genetic diversity to guide conservation efforts. Such knowledge is urgently needed for Unio crassus, a highly imperilled species originally widespread throughout Europe and southwest Asia. Recent studies have resurrected several species from synonymy based on mitochondrial data, revealing U. crassus to be a complex of cryptic species. To address long-standing taxonomic uncertainties hindering effective conservation, we integrate morphometric, phylogenetic, and phylogeographic analyses to examine species diversity within the U. crassus complex across its entire range. Phylogenetic analyses were performed using cytochrome c oxidase subunit I (815 specimens from 182 populations) and, for selected specimens, whole mitogenome sequences and Anchored Hybrid Enrichment (AHE) data on âˆ¼ 600 nuclear loci. Mito-nuclear discordance was detected, consistent with mitochondrial DNA gene flow between some species during the Pliocene and Pleistocene. Fossil-calibrated phylogenies based on AHE data support a Mediterranean origin for the U. crassus complex in the Early Miocene. The results of our integrative approach support 12 species in the group: the previously recognised Unio bruguierianus, Unio carneus, Unio crassus, Unio damascensis, Unio ionicus, Unio sesirmensis, and Unio tumidiformis, and the reinstatement of five nominal taxa: Unio desectusstat. rev., Unio gontieriistat. rev., Unio mardinensisstat. rev., Unio nanusstat. rev., and Unio vicariusstat. rev. Morphometric analyses of shell contours reveal important morphospace overlaps among these species, highlighting cryptic, but geographically structured, diversity. The distribution, taxonomy, phylogeography, and conservation of each species are succinctly described.

Integrating ecosystem services into sustainable landscape management: A collaborative approach.

The Paiva River is considered one of the least polluted rivers in Europe and its watershed has a high conservation value. However, the Paiva River basin suffers pressures related with recurrent disturbances in land use, such as forest fires, agricultural activities, urbanization and pressures that affect the natural hydromorphological conditions and the continuity of watercourses. Blue and Green Infrastructures (BGINs) emerge to improve biodiversity, sustainability and the supply of ecosystem services while improving socioeconomic aspects. Thus, this article aims to identify priority areas in the basin, for intervention with these infrastructures. For that, a spatial multicriteria decision analysis (MDCA) was carried out according to several data related to the Paiva River Basin. As local politicians and responsible entities for the natural resources management are the main experts on the problems and their possible solutions at the local level, they were involved in this decision-making model. Therefore, these specialized stakeholders did the weighting assignment according to the most or least importance of the same for the work. The map of priority locations to implement BGINs was obtained in the sequel. To the top 5 priority areas, stakeholders attributed the best solutions based on nature. The most recommended BGINs were recovery/maintenance of riparian vegetation and conservation and reforestation of the native forest, both presented in four of the five areas, and introduction of fuel management strips presented in three of the five areas. Thus, we concluded that it is extremely important to include the communities and the competent entities of nature and environment management in scientific projects related to conservation, forming a synergy that makes it possible to combine scientific knowledge with local experience acquired in the field. This project uses a very flexible methodology of local data and can be a great example to be implemented in other hydrographic basins anywhere in the world.

Integrative assessment of river damming impacts on aquatic fauna in a Portuguese reservoir.

The impacts of river damming on aquatic fauna are assessed and then integrated across hierarchical scales, portrayed as nested circles. The outer circles characterize the studied site for habitat disturbance and hydrologic regime during the construction and filling phases. The inner circles characterize the construction and filling phase zones for water quality parameters and aquatic fauna. The procedure for integrating the impacts comprises two consecutive stages: in the task stage, inner circles are characterized through field and laboratory work involving sampling and analyses of water aliquots and aquatic fauna; in the impact assessment stage, circle data are processed in ecological and statistical algorithms, which allow identification of changes in abundance and composition of aquatic fauna communities and their integration with changes in water quality parameters across the construction and filling phase zones. The integrative assessment of river damming impacts on aquatic fauna was carried out in the Sabor River dam (Portugal). This dam created two reservoirs: primary and secondary. Changes in water quality caused by dam construction and stream water impoundment were significant, marked by increases in temperature and electric conductivity downstream, accumulation of phosphorus and nitrogen in the reservoirs triggering the growth of algae and the increase of chlorophyll a, and drop of transparency. These changes were aggravated in the secondary reservoir. The consequences of water deterioration for aquatic fauna were severe, marked by abrupt declines of native fish species and invasion of exotic species even upwards the reservoirs. The ecological status determined from ecological quality ratios of benthic macroinvertebrate assemblages were also affected, changing from good-fair in the unaffected watercourses to fair-poor in the lakes.

The role of environmental land use conflicts in soil fertility: A study on the Uberaba River basin, Brazil.

In the Uberaba River basin (state of Minas Gerais, Brazil), pastures for livestock production have invaded areas of native vegetation (Cerrado biome), while already existing pastures were invaded by crop agriculture, with an expansion of sugar cane plantations in the most recent years. In some areas of the basin, these land use changes were classified as environmental land use conflicts because the new uses were not conforming to land capability, i.e. the soil's natural use. Where the areas in conflict became dense, some soil properties have changed significantly, namely the organic matter content and the exchangeable potassium concentration, which have decreased drastically (5kg/m(3) per 10% increase in the conflict area) threatening the fertility of soil. Besides, these changes may have triggered a cascade of other environmental damages, specifically the increase of soil erosion and the degradation of water quality with negative impacts on aquatic biodiversity, related to a disruption of soil organic matter structural functions. Because half the Uberaba catchment has been considered is a state of accentuated environmental degradation, not only caused by environmental land use conflicts, conservation measures have been proposed and requested for immediate implementation across the watershed.

First results on the genetic diversity of the invasive signal crayfish Pacifastacus leniusculus (Dana, 1852) in Europe using novel microsatellite loci.

The introduction of non-native crayfish in aquatic ecosystems is very common due to human activities (e.g. aquaculture, recreational and commercial fisheries). The signal crayfish, Pacifastacus leniusculus (Dana, 1852), is one of the most widespread invasive species in Europe. Although several important ecological and economic impacts of this species have been reported, its European population genetic characterisation has never been undertaken using nuclear markers. Thus, the aim of this study was to develop and characterise new microsatellite markers for signal crayfish that can be useful in future studies in its invaded range, since only five are available so far. In total, 93 individuals from four geographically distinct European populations (Portugal, Great Britain, Finland and Sweden) were scored for the new markers and for those previously described, with the Bayesian analysis revealing a clear distinction among populations. These markers are suitable for future studies of the population genetic structure of this important invasive species, by increasing information about the possible pathways of introduction and dispersal, and by giving insights about the most important vectors of introduction.

Impacts of climate change and land-use scenarios on Margaritifera margaritifera, an environmental indicator and endangered species.

In this study, we assess the impacts of future climate and land-use in the Beça River (northern Portugal) under different scenarios and how this will translate into the conservation status of the endangered pearl mussel Margaritifera margaritifera (Linnaeus, 1758). This species is currently present in several stretches of the Beça River that still hold adequate ecological conditions. However, the species is threatened by projected declines in precipitation for the 21st century, with implication on the river flows and water depths that might decrease below the species requisites. This situation could be especially critical during summer conditions since the ecological flows may not be assured and several river stretches may be converted into stagnant isolated pools. The habitat connectivity will also be affected with reverberating effects on the mobility of Salmo trutta, the host of M. margaritifera, with consequences in the reproduction and recruitment of pearl mussels. In addition, human-related threats mostly associated with the presence of dams and an predicted increases in wildfires in the future. While the presence of dams may decrease even further the connectivity and river flow, with wildfires the major threat will be related to the wash out of burned areas during storms, eventually causing the disappearance of the mussels, especially the juveniles. In view of future climate and land-use change scenarios, conservation strategies are proposed, including the negotiation of ecological flows with the dam promoters, the replanting of riparian vegetation along the water course and the reintroduction of native tree species throughout the catchment.

Groundwater quality in rural watersheds with environmental land use conflicts.

The quality of groundwater was evaluated in a rural watershed of northern Portugal (River Sordo basin) where environmental land use conflicts have developed in the course of a progressive invasion of forest and pasture lands by agriculture, especially by vineyards. The selected groundwater quality parameters were the concentrations of sodium, calcium, bicarbonate, chloride and nitrates, derived from natural and anthropogenic sources. The environmental land use conflicts were revealed by the coupling of land use and land capability raster maps. The land capability evaluation allocated 70.3% of the basin to the practicing of agriculture, 20% to livestock pasturing and 9.7% to a mosaic of land uses including agriculture, livestock pasturing and forestry. The assessment of land use conflicts allocated 93.9% of the basin to no conflict areas. Minor conflict areas (4.1%) were found concentrated in the western region of the watershed. They correspond to an invasion of farmlands towards sectors of the catchment capable for the practicing of livestock pasturing. Moderate (1.6%) and major (0.4%) conflict areas were found limited to the eastern region, matching steep hillsides capable for the practicing of livestock pasturing or forestry but presently occupied with vineyards. The spatial distributions of ion concentrations were generally justified by common geochemical processes. The dominance of high concentration levels in moderate and major conflict areas was justified within the framework of nutrient dynamics in vineyard environment. Nitrate in groundwater was likewise produced via the nitrification of N-fertilizers. Apparently, this process promoted the weathering of plagioclase by the nitric acid reaction, in concurrence with the weathering by the carbonic acid reaction. The impact of nitrification was found more important in moderate and major conflict areas, relative to no conflict areas.

Soil losses in rural watersheds with environmental land use conflicts.

Soil losses were calculated in a rural watershed where environmental land use conflicts developed in the course of a progressive invasion of forest and pasture/forest lands by agriculture, especially vineyards. The hydrographic basin is located in the Douro region where the famous Port wine is produced (northern Portugal) and the soil losses were estimated by the Universal Soil Loss Equation (USLE) in combination with a Geographic Information System (GIS). Environmental land use conflicts were set up on the basis of land use and land capability maps, coded as follows: 1-agriculture, 2-pasture, 3-pasture/forest, and 4-forest. The difference between the codes of capability and use defines a conflict class, where a negative or nil value means no conflict and a positive i value means class i conflict. The reliability of soil loss estimates was tested by a check of these values against the frequency of stone wall instabilities in vineyard terraces, with good results. Using the USLE, the average soil loss (A) was estimated in A=12.2 t·ha(-1)·yr(-1) and potential erosion risk areas were found to occupy 28.3% of the basin, defined where soil losses are larger than soil loss tolerances. Soil losses in no conflict regions (11.2 t·ha(-1)·yr(-1)) were significantly different from those in class 2 (6.8 t·ha(-1)·yr(-1)) and class 3 regions (21.3 t·ha(-1)·yr(-1)) that in total occupy 2.62 km(2) (14.3% of the basin). When simulating a scenario of no conflict across the entire basin, whereby land use in class 2 conflict regions is set up to permanent pastures and in class 3 conflict regions to pine forests, it was concluded that A=0.95 t·ha(-1)·yr(-1) (class 2) or A=9.8 t·ha(-1)·yr(-1) (class 3), which correspond to drops of 86% and 54% in soil loss relative to the actual values.