Microbial diversity and proxy species for human impact in Italian karst caves.

To date, the highly adapted cave microbial communities are challenged by the expanding anthropization of these subterranean habitats. Although recent advances in characterizing show-caves microbiome composition and functionality, the anthropic effect on promoting the establishment, or reducing the presence of specific microbial guilds has never been studied in detail. This work aims to investigate the whole microbiome (Fungi, Algae, Bacteria and Archaea) of four Italian show-caves, displaying different environmental and geo-morphological conditions and one recently discovered natural cave to highlight potential human-induced microbial traits alterations. Results indicate how show-caves share common microbial traits in contrast to the natural one; the first are characterized by microorganisms related to outdoor environment and/or capable of exploiting extra inputs of organic matter eventually supplied by tourist flows (i.e. Chaetomium and Phoma for fungi and Pseudomonas for bacteria). Yet, variation in microalgae assemblage composition was reported in show-caves, probably related to the effect of the artificial lighting. This study provides insights into the potential microbiome cave contamination by human-related bacteria (e.g. Lactobacillus and Staphylococcus) and commensal/opportunistic human associated fungi (e.g. Candida) and dermatophytes. This work is critical to untangle caves microbiome towards management and conservation of these fragile ecosystems.

Magnaporthe oryzae cell wall hydrolysate induces ROS and fungistatic VOCs in rice cell cultures.

Plants react to microbial attack with a number of defense mechanisms, including the synthesis of volatile organic compounds (VOCs) and the production of reactive oxygen species (ROS). These responses are triggered by elicitors derived from either the cell surface of pathogens or the incomplete hydrolysis of the plant cell wall. Here we show the response of rice (Oryza sativa L., cv Gigante Vercelli) cell cultures following treatment with cell wall hydrolysates prepared from the rice blast Magnaporthe oryzae. Elicitation prompted the production of several plant VOCs, which were analyzed by stir bar sorptive extraction from both the liquid and head-space phase (SBSE and HSSE, respectively) and gas chromatography coupled to mass spectrometry (GC-MS) analysis. VOCs included alkanes, alkenes and long-chain alcohols as well as cinnamyl alcohol, myristicin, a sesquiterpene alcohol (caryolan-1-ol), 1-butanamide and 2-pentylfuran. The major released compounds, 1-octanol and 1-decanol, were found to induce ROS production in both elicited and non-elicited rice cells and showed fungistatic activity against the pathogen M. oryzae. The possible role of induced VOCs and ROS production in the plant-pathogen interaction is discussed.