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1.
Article in English | MEDLINE | ID: mdl-23568084

ABSTRACT

The infrared and Raman spectra of methylene bis(thiocyanate), CH2(SCN)2, were obtained. The observed bands were assigned to the different normal modes of vibration using the results of a DFT calculation of the molecular vibrational properties. These results and the experimental data were used to define a Scaled Quantum Mechanics force field for the molecule. A similar treatment was applied to the thiocyanogen molecule, (SCN)2, for which the experimental frequencies were already reported in the literature. The sets of internal force constants for both molecules show very similar values.


Subject(s)
Thiocyanates/chemistry , Models, Molecular , Quantum Theory , Spectroscopy, Fourier Transform Infrared , Spectrum Analysis, Raman
2.
Spectrochim Acta A Mol Biomol Spectrosc ; 65(3-4): 560-4, 2006 Nov.
Article in English | MEDLINE | ID: mdl-16533616

ABSTRACT

The infrared and Raman spectra of KCF(3)SO(2) were obtained and the observed spectral features assigned to the expected normal modes of vibration. Besides, the vibrational properties of the CF(3)SO(2)(-) and CF(3)SeO(2)(-) related anions were studied by means of density functional theory (DFT) techniques. After obtaining the optimized geometrical parameters and conformations, the vibrational wavenumbers and the associated force constants were calculated. The original force fields in cartesian coordinates were transformed to local symmetry coordinates and subsequently scaled to reproduce the experimental wavenumbers. Some trends observed in the force constants of the studied species and of the related CF(3)SO(3)(-) anion could be explained by the differences in geometrical parameters.


Subject(s)
Spectrophotometry, Infrared , Spectrum Analysis, Raman , Vibration , Anions , Mechanics , Mesylates/chemistry , Molecular Structure , Quantum Theory , Selenium Compounds/chemistry
3.
Spectrochim Acta A Mol Biomol Spectrosc ; 62(1-3): 221-5, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16257717

ABSTRACT

Force fields and vibrational wavenumbers were calculated for the molecules SO(2)XF (X=Cl, Br) using DFT techniques. The previously available experimental data and assignments for SO(2)ClF and SO(2)BrF were partially confirmed by the theoretical results. These data were subsequently used in the definition of scaled quantum mechanics force fields for such molecules. A comparison of the obtained force constants is made with results previously published for the SO(2)X(2) molecules.


Subject(s)
Chlorides/chemistry , Fluorides/chemistry , Sulfinic Acids/chemistry , Sulfur Dioxide , Quantum Theory
4.
Article in English | MEDLINE | ID: mdl-15683811

ABSTRACT

The infrared spectra of CCl3SO2OCH2CF3 were obtained in the gaseous, liquid and solid states and complemented with the Raman spectrum of the liquid. Quantum chemistry calculations using the density functional theory (DFT) were used to predict the most stable geometry and conformation of the studied molecule. The harmonic vibrational frequencies and force field were also calculated. Comparison with related molecules and with the predicted frequencies was used as the basis for the assignment of the observed spectral features. Subsequently, a scaling of the original force field by means of a least square procedure was made in order to reproduce as well as possible the experimental frequencies, leading to a final root mean square deviation of 10.6 cm(-1).


Subject(s)
Alkanesulfonates/chemistry , Chloroform/analogs & derivatives , Chloroform/chemistry , Molecular Conformation , Spectrophotometry, Infrared , Spectroscopy, Fourier Transform Infrared , Spectrum Analysis, Raman
5.
J Phys Chem A ; 109(35): 7946-56, 2005 Sep 08.
Article in English | MEDLINE | ID: mdl-16834177

ABSTRACT

Ethyl methanesulfonate, CH3SO2OCH2CH3, is well-known as an alkylating agent in mutagenic and carcinogenic processes. Its electronic structure and that of the methanesulfonate anion (CH3SO3-) were determined using optimization methods based on density functional theory and Moller-Plesset second-order perturbation theory. For CH3SO2OCH2CH3, two conformations with symmetries C(s) and C1 are obtained, the former being more stable than the latter. Natural bond orbital (NBO) calculations show the C(s) conformation provides a more favorable geometry of the lone pairs of the oxygen atom linking the ethyl group. The NBO technique also reveals the characteristics of the methanesulfonate anion as a leaving group due to the rearrangement of the excess electronic charge after alkylation. Furthermore, the infrared spectra of CH3SO2OCH2CH3 are reported for the liquid and solid states as well as the Raman spectrum of the liquid. Comparison to experiment of the conformationally averaged IR spectrum of C(s) and C1 provides evidence of the predicted conformations in the solid IR spectrum. These experimental data along with the calculated theoretical force constants are used to define a scaled quantum mechanical force field for the target molecule, which allowed the measured frequencies to be reproduced with a final root-mean-square deviation of 9 cm(-1) and, thus, a reliable assignment of the vibrational spectrum.

6.
Article in English | MEDLINE | ID: mdl-14747086

ABSTRACT

The infrared spectra of 2,2,2-trifluoroethyl trifluoromethanesulfonate (CF3SO2OCH2CF3) were obtained in the gaseous, liquid and solid states as well as the Raman spectrum of the liquid. Quantum chemistry calculations using the density functional theory were used to predict the most stable geometry and conformation of the studied molecule. Subsequently, the harmonic vibrational frequencies and force field were calculated. An assignment of the observed spectral features made after comparison with the related molecules and with the predicted frequencies was used as the basis of a scaling of the original force field in order to reproduce as well as possible the experimental frequencies. With this purpose a set of scale factors was calculated by a least square procedure, leading to a final root mean square deviation (RMSD) of 9.7 cm(-1).


Subject(s)
Mesylates/chemistry , Models, Molecular , Spectrophotometry, Infrared , Spectrum Analysis, Raman
7.
Spectrochim Acta A Mol Biomol Spectrosc ; 60(1-2): 405-11, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14670506

ABSTRACT

Force fields and vibrational wavenumbers were calculated for the molecules SO2X2 (X=F, Cl, Br) using DFT techniques. The previously available experimental data and assignments for SO2F2 and SO2Cl2 were compared with the theoretical results and revised, and new low temperature infrared and Raman data were obtained for SO2Cl2. These data were subsequently used in the definition of scaled quantum mechanics force fields for such molecules. Adjusted wavenumbers were also predicted for the still unknown SO2Br2. A comparison is made with results published for the VO2X2- anions.


Subject(s)
Spectrophotometry, Infrared/methods , Spectrum Analysis, Raman/methods , Sulfur/chemistry , Chlorides , Models, Molecular , Models, Theoretical , Sulfinic Acids/chemistry
8.
Spectrochim Acta A Mol Biomol Spectrosc ; 58(8): 1769-74, 2002 Jun.
Article in English | MEDLINE | ID: mdl-12166747

ABSTRACT

The infrared spectra of calcium malonate dihydrate in the polycrystalline state, both normal and with different degrees of deuteration, were obtained at low temperatures in order to obtain information about the crystalline environment of the hydration water molecules. The study showed that both water molecules are non-equivalent and non-symmetric. That result is indicative of a non-symmetric space group for the crystal, in agreement with one out of three different crystallographic studies made on the substance.


Subject(s)
Malonates/chemistry , Calcium/chemistry , Crystallography , Deuterium Oxide , Spectroscopy, Fourier Transform Infrared , Temperature , Thermodynamics , Water/chemistry
9.
Inorg Chem ; 40(16): 3979-85, 2001 Jul 30.
Article in English | MEDLINE | ID: mdl-11466057

ABSTRACT

The conformational properties and geometric structures of trifluoromethyl fluoroformate, CF(3)OC(O)F (1), and perfluorodimethyl carbonate, (CF(3)O)(2)CO (2), have been studied by matrix IR spectroscopy, gas electron diffraction (GED), and quantum chemical calculations (MP2 and B3LYP with 6-311G basis sets). In both compounds the synperiplanar orientation of the O-CF(3) groups relative to the C=O double bond is preferred. If heated Ar/1 and Ar/2 mixtures are deposited as a matrix at 14 K, new bands appear in the matrix IR spectra which are assigned to the anti form of 1 and to the syn/anti form of 2. At room temperature the contribution of the anti rotamer of 1 is 4% (DeltaH degrees = H degrees (anti) - H degrees (syn) = 1.97(5) kcal/mol), and the contribution of the syn/anti conformer of 2 is estimated to be less than 1%. These high-energy conformers are not observed in the GED experiment. The quantum chemical calculations reproduce the structural and conformational properties of both compounds satisfactorily.

10.
Article in English | MEDLINE | ID: mdl-11206572

ABSTRACT

Infrared spectra of the metastable state I (MSI) of normal and 15NO, N18O and 54Fe isotopically substituted sodium nitroprusside dihydrate (Na2[Fe(CN)5NO].2H2O) have been obtained at 77 K. A comparison of the isotopic shifts measured for the vibrational modes of the FeXY (XY = NO or ON) moiety with those calculated by means of quantum chemistry (DFT) procedures supports the linear Fe-O = N arrangement for the MSI state.


Subject(s)
Nitric Oxide/chemistry , Nitroprusside/chemistry , Spectroscopy, Fourier Transform Infrared , Indicators and Reagents/chemistry , Iron Isotopes , Nitrogen Isotopes , Oxygen Isotopes , Temperature , Vibration
11.
Spectrochim Acta A Mol Biomol Spectrosc ; 56A(12): 2379-89, 2000 Nov 01.
Article in English | MEDLINE | ID: mdl-11075678

ABSTRACT

The infrared and Raman spectra were obtained for liquid CF3SO2CH3, as well as the infrared spectrum of the gaseous substance. The molecular geometry was optimized by means of the Hartree-Fock (HF), second order electron correlation (MP2) and density functional theory (DFT) procedures of quantum chemistry, resulting in a structure with Cs symmetry. The wavenumbers corresponding to the normal modes of vibration were calculated using the DFT (B3LYP/6-31G**) approximation and their agreement with the measured values improved after scaling of the associated force field. An assignment of bands is proposed on the basis of such calculations and the comparison with related molecules.


Subject(s)
Sulfones/chemistry , Spectrophotometry, Infrared , Spectrum Analysis, Raman
12.
Spectrochim Acta A Mol Biomol Spectrosc ; 56(6): 1101-10, 2000 May.
Article in English | MEDLINE | ID: mdl-10845538

ABSTRACT

Infrared and Raman spectra were obtained for liquid silyl trifluoromethanesulfonate, a silylating agent of limited stability. The molecular geometry was optimized by means of density functional theory and Möller-Plesset second order perturbation theory methods, using different basis sets. The optimized structure presents a gauche conformation, similar to that adopted by methyl trifluoromethanesulfonate, which was determined experimentally a short time ago. The wavenumbers for the normal modes of vibration and the corresponding force constants were also calculated, facilitating the interpretation of the vibrational data. The harmonic force constants given by theory were scaled to reproduce adequately the experimental wavenumbers.


Subject(s)
Silanes/chemistry , Models, Chemical , Spectrophotometry, Infrared , Spectrum Analysis, Raman
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