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1.
Article in English | MEDLINE | ID: mdl-37904327

ABSTRACT

AIM: Neuroimaging-based machine-learning predictions of psychosis onset rely on the hypothesis that structural brain anomalies may reflect the underlying pathophysiology. Yet, current predictors remain difficult to interpret in light of brain structure. Here, we combined an advanced interpretable supervised algorithm and a model of neuroanatomical age to identify the level of brain maturation of the regions most predictive of psychosis. METHODS: We used the voxel-based morphometry of a healthy control dataset (N = 2024) and a prospective longitudinal UHR cohort (N = 82), of which 27 developed psychosis after one year. In UHR, psychosis was predicted at one year using Elastic-Net-Total-Variation (Enet-TV) penalties within a five-fold cross-validation, providing an interpretable map of distinct predictive regions. Using both the whole brain and each predictive region separately, a brain age predictor was then built and validated in 1605 controls, externally tested in 419 controls from an independent cohort, and applied in UHR. Brain age gaps were computed as the difference between chronological and predicted age, providing a proxy of whole-brain and regional brain maturation. RESULTS: Psychosis prediction was performant with 80 ± 4% of area-under-curve and 69 ± 5% of balanced accuracy (P < 0.001), and mainly leveraged volumetric increases in the ventromedial prefrontal cortex and decreases in the left precentral gyrus and the right orbitofrontal cortex. These regions were predicted to have delayed and accelerated maturational patterns, respectively. CONCLUSION: By combining an interpretable supervised model of conversion to psychosis with a brain age predictor, we showed that inter-regional asynchronous brain maturation underlines the predictive signature of psychosis.

3.
Mol Autism ; 14(1): 18, 2023 05 15.
Article in English | MEDLINE | ID: mdl-37189195

ABSTRACT

BACKGROUND: The cerebellum contains more than 50% of all neurons in the brain and is involved in a broad range of cognitive functions, including social communication and social cognition. Inconsistent atypicalities in the cerebellum have been reported in individuals with autism compared to controls suggesting the limits of categorical case control comparisons. Alternatively, investigating how clinical dimensions are related to neuroanatomical features, in line with the Research Domain Criteria approach, might be more relevant. We hypothesized that the volume of the "cognitive" lobules of the cerebellum would be associated with social difficulties. METHODS: We analyzed structural MRI data from a large pediatric and transdiagnostic sample (Healthy Brain Network). We performed cerebellar parcellation with a well-validated automated segmentation pipeline (CERES). We studied how social communication abilities-assessed with the social component of the Social Responsiveness Scale (SRS)-were associated with the cerebellar structure, using linear mixed models and canonical correlation analysis. RESULTS: In 850 children and teenagers (mean age 10.8 ± 3 years; range 5-18 years), we found a significant association between the cerebellum, IQ and social communication performance in our canonical correlation model. LIMITATIONS: Cerebellar parcellation relies on anatomical boundaries, which does not overlap with functional anatomy. The SRS was originally designed to identify social impairments associated with autism spectrum disorders. CONCLUSION: Our results unravel a complex relationship between cerebellar structure, social performance and IQ and provide support for the involvement of the cerebellum in social and cognitive processes.


Subject(s)
Cerebellum , Social Skills , Adolescent , Humans , Child , Cerebellum/diagnostic imaging , Brain , Cognition/physiology , Brain Mapping , Magnetic Resonance Imaging/methods
4.
Neuroimage ; 263: 119637, 2022 11.
Article in English | MEDLINE | ID: mdl-36122684

ABSTRACT

Prediction of chronological age from neuroimaging in the healthy population is an important issue because the deviations from normal brain age may highlight abnormal trajectories towards brain disorders. As a first step, ML models have emerged to predict chronological age from brain MRI, as a proxy measure of biological age. However, there is currently no consensus w.r.t which Machine Learning (ML) model is best suited for this task, largely because of a lack of public benchmark. Furthermore, new large emerging population neuroimaging datasets are often biased by the acquisition center images are coming from. This bias heavily deteriorates models generalization capacities, especially for Deep Learning (DL) algorithms that are known to overfit rapidly on the simplest features (known as simplicity bias). Here we propose a new public benchmarking resource, namely Open Big Healthy Brains (OpenBHB), along with a challenge for both brain age prediction and site-effect removal through a representation learning framework. OpenBHB is large-scale, gathering >5K 3D T1 brain MRI from Healthy Controls (HC) and highly multi-sites, aggregating >60 centers worldwide and 10 studies. OpenBHB is expected to grow both in terms of available modalities and number of subjects. All OpenBHB datasets are uniformly preprocessed, including quality check, with container technologies that consist in: 3D Voxel-Based Morphometry maps (VBM from CAT12), quasi-raw (simple linear alignment of images), and Surface-Based Morphometry indices (SBM, from FreeSurfer). The OpenBHB challenge is permanent and we provide all tools, materials and tutorials for participants to easily submit and benchmark their model against each other on a public leaderboard.


Subject(s)
Brain Diseases , Brain , Humans , Brain/diagnostic imaging , Magnetic Resonance Imaging/methods , Neuroimaging/methods , Machine Learning
5.
Front Neural Circuits ; 15: 648538, 2021.
Article in English | MEDLINE | ID: mdl-34305535

ABSTRACT

In the prefrontal cortex (PFC), higher-order cognitive functions and adaptive flexible behaviors rely on continuous dynamical sequences of spiking activity that constitute neural trajectories in the state space of activity. Neural trajectories subserve diverse representations, from explicit mappings in physical spaces to generalized mappings in the task space, and up to complex abstract transformations such as working memory, decision-making and behavioral planning. Computational models have separately assessed learning and replay of neural trajectories, often using unrealistic learning rules or decoupling simulations for learning from replay. Hence, the question remains open of how neural trajectories are learned, memorized and replayed online, with permanently acting biological plasticity rules. The asynchronous irregular regime characterizing cortical dynamics in awake conditions exerts a major source of disorder that may jeopardize plasticity and replay of locally ordered activity. Here, we show that a recurrent model of local PFC circuitry endowed with realistic synaptic spike timing-dependent plasticity and scaling processes can learn, memorize and replay large-size neural trajectories online under asynchronous irregular dynamics, at regular or fast (sped-up) timescale. Presented trajectories are quickly learned (within seconds) as synaptic engrams in the network, and the model is able to chunk overlapping trajectories presented separately. These trajectory engrams last long-term (dozen hours) and trajectory replays can be triggered over an hour. In turn, we show the conditions under which trajectory engrams and replays preserve asynchronous irregular dynamics in the network. Functionally, spiking activity during trajectory replays at regular timescale accounts for both dynamical coding with temporal tuning in individual neurons, persistent activity at the population level, and large levels of variability consistent with observed cognitive-related PFC dynamics. Together, these results offer a consistent theoretical framework accounting for how neural trajectories can be learned, memorized and replayed in PFC networks circuits to subserve flexible dynamic representations and adaptive behaviors.


Subject(s)
Education, Distance , Memory, Short-Term/physiology , Models, Neurological , Neural Networks, Computer , Neuronal Plasticity/physiology , Prefrontal Cortex/physiology , Action Potentials/physiology , Humans
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