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1.
Chem Sci ; 14(47): 13915-13923, 2023 Dec 06.
Article in English | MEDLINE | ID: mdl-38075664

ABSTRACT

Stapling is a macrocyclisation method that connects amino acid side chains of a peptide to improve its pharmacological properties. We describe an approach for stapled peptide preparation and biochemical evaluation that combines recombinant expression of fusion constructs of target peptides and cysteine-reactive divinyl-heteroaryl chemistry as an alternative to solid-phase synthesis. We then employ this workflow to prepare and evaluate BRC-repeat-derived inhibitors of the RAD51 recombinase, showing that a diverse range of secondary structure elements in the BRC repeat can be stapled without compromising binding and function. Using X-ray crystallography, we elucidate the atomic-level features of the staple moieties. We then demonstrate that BRC-repeat-derived stapled peptides can disrupt RAD51 function in cells following ionising radiation treatment.

2.
Braz J Infect Dis ; 27(4): 102791, 2023.
Article in English | MEDLINE | ID: mdl-37500062

ABSTRACT

INTRODUCTION: Patients hospitalized with COVID-19 are often submitted to invasive procedures and they are at risk for hospital-associated adverse events. OBJECTIVES: To evaluate the epidemiological and clinical aspects of patients hospitalized with COVID-19; the occurrence of adverse events and the risk factors for mortality. METHOD: Cohort study that included adult patients hospitalized with a diagnosis of SARSCoV-2 infection, at the tertiary University Hospital of UNICAMP from March 2020 to March 2021. Patients were identified through the hospital epidemiological surveillance system and followed until discharge or death. Descriptive, comparative, and logistic regression analysis was performed. RESULTS: 650 adult patients were included. The main adverse events identified were nosocomial infections (31.5%), renal failure (33.8%), thromboembolic and vascular events (12.6%). Mortality was higher among those with bloodstream infections (30.2% vs. 8.6%; p < 0.0001), ventilator-associated pneumonia (VAP, 52.5% vs. 12.3%; p < 0.0001), catheter associated urinary infection (27.3% vs. 7.2%; p < 0.0001); thromboembolic and vascular events (23.0% vs. 9.9%; p < 0.0001) and renal failure (81.3% vs. 20.9%; p < 0.0001). Klebsiella pneumoniae (15.6%), Pseudomonas aeruginosa (14.4%), Enterococcus faecalis (8.6%) were the most isolated bacteria. Logistic regression analysis identified age, (RR = 1.03; 95% CI 1.02 to 1.05); ICU admission (RR = 3.06; 95% CI 1.59 to 5.87), vasoactive drug use (RR = 3.1; 95% CI 1.79 to 4.82); renal failure (RR = 7.76; 95% CI 4.54 to 13.26); and VAP (RR = 2.2; 95% CI 1.23 to 3.96), independently associated with mortality. CONCLUSION: adverse events have an important impact on the evolution of patients with COVID-19, reinforcing the need for optimized prevention and control measures as an essential part of care for these patients.


Subject(s)
COVID-19 , Renal Insufficiency , Adult , Humans , Cohort Studies , Tertiary Care Centers , Brazil/epidemiology , Intensive Care Units , Hospital Mortality
3.
J Int Med Res ; 51(6): 3000605231177187, 2023 Jun.
Article in English | MEDLINE | ID: mdl-37291854

ABSTRACT

OBJECTIVE: To investigate characteristics that may be associated with radiologic and functional findings following discharge in patients with severe coronavirus disease 2019 (COVID-19). METHODS: This single-center, prospective, observational cohort study comprised patients aged >18 years who were hospitalized with COVID-19 pneumonia, between May and October 2020. After 3 to 6 months of discharge, patients were clinically evaluated and underwent spirometry, a 6-minute walk test (6MWT), and chest computed tomography (CT). Statistical analysis was performed using association and correlation tests. RESULTS: A total of 134 patients were included (25/114 [22%] were admitted with severe hypoxemia). On the follow-up chest CT, 29/92 (32%) had no abnormalities, regardless of the severity of the initial involvement, and the mean 6MWT distance was 447 m. Patients with desaturation on admission had an increased risk of remaining CT abnormalities: patients with SpO2 between 88 and 92% had a 4.0-fold risk, and those with SpO2 < 88% had a 6.2-fold risk. The group with SpO2 < 88% also walked shorter distances than patients with SpO2 between 88 and 92%. CONCLUSION: Initial hypoxemia was found to be a good predictor of persistent radiological abnormalities in follow-up and was associated with low performance in 6MWT.


Subject(s)
COVID-19 , Humans , Prospective Studies , Oximetry , Hypoxia/diagnostic imaging , Tomography, X-Ray Computed
4.
Nat Commun ; 14(1): 682, 2023 02 08.
Article in English | MEDLINE | ID: mdl-36755049

ABSTRACT

Snakebite envenoming continues to claim many lives across the globe, necessitating the development of improved therapies. To this end, broadly-neutralizing human monoclonal antibodies may possess advantages over current plasma-derived antivenoms by offering superior safety and high neutralization capacity. Here, we report the establishment of a pipeline based on phage display technology for the discovery and optimization of high affinity broadly-neutralizing human monoclonal antibodies. This approach yielded a recombinant human antibody with superior broadly-neutralizing capacities in vitro and in vivo against different long-chain α-neurotoxins from elapid snakes. This antibody prevents lethality induced by Naja kaouthia whole venom at an unprecedented low molar ratio of one antibody per toxin and prolongs the survival of mice injected with Dendroaspis polylepis or Ophiophagus hannah whole venoms.


Subject(s)
Elapid Venoms , Neurotoxins , Humans , Animals , Mice , Broadly Neutralizing Antibodies , Elapidae , Antivenins , Antibodies, Monoclonal
5.
Braz. j. infect. dis ; 27(4): 102791, 2023. tab
Article in English | LILACS-Express | LILACS | ID: biblio-1513865

ABSTRACT

ABSTRACT Introduction: Patients hospitalized with COVID-19 are often submitted to invasive procedures and they are at risk for hospital-associated adverse events. Objectives: To evaluate the epidemiological and clinical aspects of patients hospitalized with COVID-19; the occurrence of adverse events and the risk factors for mortality. Method: Cohort study that included adult patients hospitalized with a diagnosis of SAR-SCoV-2 infection, at the tertiary University Hospital of UNICAMP from March 2020 to March 2021. Patients were identified through the hospital epidemiological surveillance system and followed until discharge or death. Descriptive, comparative, and logistic regression analysis was performed. Results: 650 adult patients were included. The main adverse events identified were nosocomial infections (31.5%), renal failure (33.8%), thromboembolic and vascular events (12.6%). Mortality was higher among those with bloodstream infections (30.2% vs. 8.6%; p < 0.0001), ventilator-associated pneumonia (VAP, 52.5% vs. 12.3%; p < 0.0001), catheter associated urinary infection (27.3% vs. 7.2%; p < 0.0001); thromboembolic and vascular events (23.0% vs. 9.9%; p < 0.0001) and renal failure (81.3% vs. 20.9%; p < 0.0001). Klebsiella pneumoniae (15.6%), Pseudomonas aeruginosa (14.4%), Enterococcus faecalis (8.6%) were the most isolated bacteria. Logistic regression analysis identified age, (RR = 1.03; 95% CI 1.02 to 1.05); ICU admission (RR = 3.06; 95% CI 1.59 to 5.87), vasoactive drug use (RR = 3.1; 95% CI 1.79 to 4.82); renal failure (RR = 7.76; 95% CI 4.54 to 13.26); and VAP (RR = 2.2; 95% CI 1.23 to 3.96), independently associated with mortality. Conclusion: adverse events have an important impact on the evolution of patients with COVID-19, reinforcing the need for optimized prevention and control measures as an essential part of care for these patients.

6.
MAbs ; 14(1): 2085536, 2022.
Article in English | MEDLINE | ID: mdl-35699567

ABSTRACT

The monocled cobra (Naja kaouthia) is among the most feared snakes in Southeast Asia due to its toxicity, which is predominantly derived from long-chain α-neurotoxins. The only specific treatment for snakebite envenoming is antivenom based on animal-derived polyclonal antibodies. Despite the lifesaving importance of these medicines, major limitations in safety, supply consistency, and efficacy create a need for improved treatments. Here, we describe the discovery and subsequent optimization of a recombinant human monoclonal immunoglobulin G antibody against α-cobratoxin using phage display technology. Affinity maturation by light chain-shuffling resulted in a significant increase in in vitro neutralization potency and in vivo efficacy. The optimized antibody prevented lethality when incubated with N. kaouthia whole venom prior to intravenous injection. This study is the first to demonstrate neutralization of whole snake venom by a single recombinant monoclonal antibody, thus providing a tantalizing prospect of bringing recombinant antivenoms based on human monoclonal or oligoclonal antibodies to the clinic.


Subject(s)
Elapidae , Snake Bites , Animals , Antibodies, Monoclonal/pharmacology , Antivenins/pharmacology , Elapid Venoms/toxicity , Humans , Snake Bites/drug therapy
7.
Nat Commun ; 13(1): 1731, 2022 04 01.
Article in English | MEDLINE | ID: mdl-35365638

ABSTRACT

Aneuploidy results in decreased cellular fitness in many species and model systems. However, aneuploidy is commonly found in cancer cells and often correlates with aggressive growth, suggesting that the impact of aneuploidy on cellular fitness is context dependent. The BRG1 (SMARCA4) subunit of the SWI/SNF chromatin remodelling complex is frequently lost in cancer. Here, we use a chromosomally stable cell line to test the effect of BRG1 loss on the evolution of aneuploidy. BRG1 deletion leads to an initial loss of fitness in this cell line that improves over time. Notably, we find increased tolerance to aneuploidy immediately upon loss of BRG1, and the fitness recovery over time correlates with chromosome gain. These data show that BRG1 loss creates an environment where karyotype changes can be explored without a fitness penalty. At least in some genetic backgrounds, therefore, BRG1 loss can affect the progression of tumourigenesis through tolerance of aneuploidy.


Subject(s)
Aneuploidy , Chromatin Assembly and Disassembly , Cell Line , Chromosome Aberrations , Chromosomes , DNA Helicases/genetics , Humans , Nuclear Proteins/genetics , Transcription Factors/genetics
8.
Chem Sci ; 12(45): 15157-15169, 2021 Nov 24.
Article in English | MEDLINE | ID: mdl-34909158

ABSTRACT

Inspired by the biogenetic proposal of an intramolecular Diels-Alder (IMDA) cycloaddition, the total synthesis of natural product nahuoic acid A, a cofactor-competitive inhibitor of the epigenetic enzyme lysine methyl transferase SETD8, has been carried out. A non-conjugated pentaenal precursor was synthesized with high levels of stereoselectivity at seven stereogenic centers and with the appropriate control of double bond geometries. Although the IMDA reaction of the non-conjugated pentaenal using Me2AlCl for catalysis at -40 °C selectively afforded the trans-fused diastereomer corresponding to the Re-endo mode of cycloaddition, under thermal reaction conditions it gave rise to a mixture of diastereomers, that preferentially formed through the exo mode, including the cis-fused angularly-methylated octahydronaphthalene diastereomer precursor of nahuoic acid A. The natural product could be obtained upon oxidation and overall deprotection of the hydroxyl groups present in the Si-exo IMDA diastereomer.

9.
Proc Natl Acad Sci U S A ; 118(46)2021 11 16.
Article in English | MEDLINE | ID: mdl-34772801

ABSTRACT

Exchanges of protein sequence modules support leaps in function unavailable through point mutations during evolution. Here we study the role of the two RAD51-interacting modules within the eight binding BRC repeats of BRCA2. We created 64 chimeric repeats by shuffling these modules and measured their binding to RAD51. We found that certain shuffled module combinations were stronger binders than any of the module combinations in the natural repeats. Surprisingly, the contribution from the two modules was poorly correlated with affinities of natural repeats, with a weak BRC8 repeat containing the most effective N-terminal module. The binding of the strongest chimera, BRC8-2, to RAD51 was improved by -2.4 kCal/mol compared to the strongest natural repeat, BRC4. A crystal structure of RAD51:BRC8-2 complex shows an improved interface fit and an extended ß-hairpin in this repeat. BRC8-2 was shown to function in human cells, preventing the formation of nuclear RAD51 foci after ionizing radiation.


Subject(s)
Protein Binding/physiology , Rad51 Recombinase/metabolism , Amino Acid Sequence , BRCA2 Protein/metabolism , Cell Line, Tumor , Humans
10.
Org Biomol Chem ; 19(43): 9460-9469, 2021 11 10.
Article in English | MEDLINE | ID: mdl-34693419

ABSTRACT

In addition to stereodefined cis-cyclopentenones, the rearrangement of naturally-occurring vinyl allene oxides can provide ketols, cyclopropylcarbinols, and Favorskii-type bis-(Z)-but-2-en-1-yl acetic acids. These processes have been studied by DFT computations using (Z)-but-1-en-1-yl allene oxides as model systems. Prior studies on the stepwise cascade process starting from (Z)-but-1-en-1-yl allene oxides established as key steps the ring opening of the oxirane to give oxidopentadienyl biradicals, and their isomerization through formation of alkenylcyclopropanone intermediates prior to the conrotatory electrocyclic ring closure to cis-configured cyclopentenones. Under neutral or under acidic conditions, the corresponding ketols and cyclopropylcarbinols have been computationally characterized as resulting from SN2, SN1 and SN1'-type processes, showing that the rearrangement of vinyl allene oxides is pH-dependent. Moreover, stereoconvergent base-induced Favorskii-type rearrangements to provide bis-(Z)-but-1-en-1-yl substituted acetic acids have also been justified. Since the model system captures the structural features of the vinyl allene oxides of biological relevance, our computations provide the most comprehensive overview of the complex reactivity of these natural species.


Subject(s)
Cyclopentanes
11.
Front Immunol ; 12: 678570, 2021.
Article in English | MEDLINE | ID: mdl-34211469

ABSTRACT

Passive immunization using monoclonal antibodies will play a vital role in the fight against COVID-19. The recent emergence of viral variants with reduced sensitivity to some current antibodies and vaccines highlights the importance of broad cross-reactivity. This study describes deep-mining of the antibody repertoires of hospitalized COVID-19 patients using phage display technology and B cell receptor (BCR) repertoire sequencing to isolate neutralizing antibodies and gain insights into the early antibody response. This comprehensive discovery approach has yielded a panel of potent neutralizing antibodies which bind distinct viral epitopes including epitopes conserved in SARS-CoV-1. Structural determination of a non-ACE2 receptor blocking antibody reveals a previously undescribed binding epitope, which is unlikely to be affected by the mutations in any of the recently reported major viral variants including B.1.1.7 (from the UK), B.1.351 (from South Africa) and B.1.1.28 (from Brazil). Finally, by combining sequences of the RBD binding and neutralizing antibodies with the B cell receptor repertoire sequencing, we also describe a highly convergent early antibody response. Similar IgM-derived sequences occur within this study group and also within patient responses described by multiple independent studies published previously.


Subject(s)
Antibodies, Monoclonal/therapeutic use , Antibodies, Neutralizing/therapeutic use , COVID-19/prevention & control , COVID-19/therapy , SARS-CoV-2/immunology , Spike Glycoprotein, Coronavirus/immunology , Antibodies, Monoclonal/immunology , Antibodies, Neutralizing/immunology , Antibodies, Viral/immunology , COVID-19/immunology , Cell Surface Display Techniques/methods , Data Mining/methods , Epitopes/immunology , Humans , Immunization, Passive/methods , COVID-19 Serotherapy
12.
Chem Sci ; 11(34): 9181-9190, 2020 Aug 12.
Article in English | MEDLINE | ID: mdl-34094194

ABSTRACT

Multicomponent and multicatalytic reactions are those processes that try to imitate the way the enzymatic machinery transforms simple building blocks into complex products. The development of asymmetric versions of these reactions is a step forward in our dream of mirroring the exquisite selectivity of biological processes. In this context, the present work describes a new reaction for the asymmetric synthesis of furo[2,3-b]pyrrole derivatives from simple 3-butynamines, glyoxylic acid and anilines in the presence of a dual catalytic system, formed from a gold complex and a chiral phosphoric acid. Computations, aimed to understand the exceptional performance of 9-anthracenyl-substituted BINOL-derived phosphoric acid catalyst, suggest a fundamental role of non-covalent interactions being established between the catalyst and the reagents for the outcome of the multicomponent process. The linear geometry of the anthracenyl substituent along with the presence of an electron-withdrawing group in the aniline and an aromatic substituent in the 3-butynamine derivative seem to be key structural factors to explain the experimental results and, particularly, the high stereoselectivity.

13.
J Org Chem ; 84(12): 7664-7673, 2019 Jun 21.
Article in English | MEDLINE | ID: mdl-31095390

ABSTRACT

The stereoselective synthesis of cis-disubstituted cyclopropanes by the Au(I)/PPh3-catalyzed cycloaddition of propargylic esters and styrene has been studied using density functional theory calculations. The computed mechanistic scheme involves the rate-limiting 1,2-rearrangement of the propargylic ester with the π-coordinated gold complex, followed by the (2 + 1)-cheletropic reaction of styrene with the alkenyl-Au(I) carbene intermediate to afford the cis-disubstituted cyclopropane derivative in a high cis/trans diastereomeric ratio. With a ( R)-di-chloro,di-gold-DTBM-SEGPHOS complex as the catalyst, computations are consistent with a rate-determining (2 + 1)-cheletropic reaction, in which facial discrimination is proposed to result from a combination of subtle steric and electronic effects in the SiRe facial approach transition structure, which favor the formation of the cis-cyclopropane diastereomer of 1 R,2 S absolute configuration, as experimentally observed.

14.
Rev. méd. panacea ; 6(3): 98-103, sept.-dic. 2017. graf
Article in Spanish | LILACS | ID: biblio-1022134

ABSTRACT

Objetivo: Determinar los conocimientos, actitudes y prácticas sobre epilepsia en los estudiantes del primer y sexto año de la facultad de medicina humana Daniel Alcides Carrión. Ica-Perú, semestre 2017 ­ I. Material y Metodos: Estudio observacional, descriptivo, transversal en 194 estudiantes de primer y sexto año de la Facultad de Medicina Daniel Alcides Carrión, semestre 2017­ I. Se utilizó un cuestionario de 33 preguntas de información demográfica, conocimientos, actitudes y prácticas sobre epilepsia. Se confeccionó la base de datos y análisis en el programa SPSS v. 23, los gráficos y la presentación en Excel y Word 2013. Resultados: Tanto los alumnos de primer y sexto año tienen un conocimiento intermedio con un (41.2%) y (44.3%) respectivamente. Además en forma general el 85.5% del total de los encuestados tienen un conocimiento intermedio. Los alumnos de primer y sexto año tienen una actitud negativa con (26,8%) y (25,8%) respectivamente. Además que en forma general el 52.5 % de los encuestados tienen una actitud negativa hacia la epilepsia, mientras que el 97,9% tuvo prácticas adecuadas. Se encontró relación entre conocimientos y prácticas, pero no hay relación entre conocimientos y actitudes, de la misma forma que no existe relación entre actitud y práctica. Conclusiones: un alto porcentaje tuvo un conocimiento intermedio, una actitud negativa y una práctica adecuada. Existe relación entre conocimientos y prácticas, mas no entre conocimientos y actitudes ni actitud y práctica. (AU)


Objetive: To determine the knowledge, attitudes and practices on epilepsy in the first and sixth year students of the human medicine school Daniel Alcides Carrión. Ica-Peru, semester 2017 ­ I. Material And Methods:Observational, descriptive, cross - sectional study in 194 first and sixth year students of the Daniel Alcides Carrión School of Medicine, semester 2017 - 1. A questionnaire was used consisting of 33 questions including demographic information, knowledge, attitudes and Practices on epilepsy. The database and analysis were made in the SPSS v.23, graphics and presentation in Excel and Word 2013. Results: OBoth the first and the sixth year have intermediate knowledge with a (41.2%) and (44.3%) respectively. In general, 85.5% of the respondents have intermediate knowledge. Only 3.6% of first year students and 1% of sixth grade students have low knowledge. The first and sixth year students have a negative attitude with (26.8%) and (25.8%) respectively. In addition, in general, 52.5% of the respondents had a negative attitude towards epilepsy, while 97.9% had adequate practices. We find an association between knowledge and practices, but there is no association between knowledge and attitudes, just as there is no association between attitude and practice. Conclusions: A high percentage had an intermediate knowledge, a negative attitude and an adequate practice. There is an association between knowledge and practices, but not between knowledge and attitudes or attitude and practice. (AU)


Subject(s)
Humans , Male , Female , Adolescent , Adult , Young Adult , Health Knowledge, Attitudes, Practice , Epilepsy , Epidemiology, Descriptive , Cross-Sectional Studies , Observational Studies as Topic
15.
Nucleic Acids Res ; 43(20): 9776-87, 2015 Nov 16.
Article in English | MEDLINE | ID: mdl-26271993

ABSTRACT

The replication protein A (RPA)-ssDNA complex formed at arrested replication forks recruits key proteins to activate the ATR-CHK1 signalling cascade. When CHK1 is inhibited during DNA replication stress, RPA2 is extensively hyperphosphorylated. Here, we investigated the role of RPA2 hyperphosphorylation in the fate of cells when CHK1 is inhibited. We show that proteins normally involved in DNA repair (RAD51) or control of RPA phosphorylation (the PP4 protein phosphatase complex) are not recruited to the genome after treatment with CHK1 and DNA synthesis inhibitors. This is not due to RPA2 hyperphosphorylation as suppression of this response does not restore loading suggesting that recruitment requires active CHK1. To determine whether RPA2 hyperphosphorylation protects stalled forks from collapse or induction of apoptosis in CHK1 inhibited cells during replication stress, cells expressing RPA2 genes mutated at key phosphorylation sites were characterized. Mutant RPA2 rescued cells from RPA2 depletion and reduced the level of apoptosis induced by treatment with CHK1 and replication inhibitors however the incidence of double strand breaks was not affected. Our data indicate that RPA2 hyperphosphorylation promotes cell death during replication stress when CHK1 function is compromised but does not appear to be essential for replication fork integrity.


Subject(s)
Apoptosis , DNA Replication , Protein Kinases , Replication Protein A/metabolism , Cell Cycle Proteins/antagonists & inhibitors , Cell Line, Tumor , Cell Nucleus/metabolism , Checkpoint Kinase 1 , DNA Breaks, Double-Stranded , DNA Repair , DNA Replication/drug effects , Humans , Mutation , Phosphorylation , Protein Kinase Inhibitors/pharmacology , Rad51 Recombinase/metabolism , Replication Protein A/genetics , Stress, Physiological
16.
Genesis ; 52(9): 793-808, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24895317

ABSTRACT

Fast and slow TnI are co-expressed in E11.5 embryos, and fast TnI is present from the very beginning of myogenesis. A novel green fluorescent protein (GFP) reporter mouse lines (FastTnI/GFP lines) that carry the primary and secondary enhancer elements of the mouse fast troponin I (fast TnI), in which reporter expression correlates precisely with distribution of the endogenous fTnI protein was generated. Using the FastTnI/GFP mouse model, we characterized the early myogenic events in mice, analyzing the migration of GFP+ myoblasts, and the formation of primary and secondary myotubes in transgenic embryos. Interestingly, we found that the two contractile fast and slow isoforms of TnI are expressed during the migration of myoblasts from the somites to the limbs and body wall, suggesting that both participate in these events. Since no sarcomeres are present in myoblasts, we speculate that the function of fast TnI in early myogenesis is, like Myosin and Tropomyosin, to participate in cell movement during the initial myogenic stages. genesis


Subject(s)
Cell Tracking/methods , Gene Expression Regulation, Developmental , Myoblasts/metabolism , Troponin I/genetics , Animals , Extremities/embryology , Genes, Reporter , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Immunohistochemistry , In Situ Hybridization , Mice , Mice, Transgenic , Models, Animal , Muscle Development/genetics , Myosins/genetics , Myosins/metabolism , Protein Isoforms , Tropomyosin/genetics , Tropomyosin/metabolism , Troponin I/metabolism
17.
Circ J ; 77(11): 2799-806, 2013.
Article in English | MEDLINE | ID: mdl-23965802

ABSTRACT

BACKGROUND: Mitochondrial disorders (MD) are multisystem diseases that arise as a result of dysfunction of the oxidative phosphorylation system. The predominance of neuromuscular manifestations in MD could mask the presence of other clinical phenotypes such as cardiac dysfunction. Reported here is a retrospective study, the main objective of which was to characterize the clinical and molecular features of a cohort of patients with cardiomyopathy and MD. METHODS AND RESULTS: Hospital charts of 2,520 patients, evaluated for presumed MD were reviewed. The clinical criterion for inclusion in this study was the presence of a cardiac disturbance accompanied by a mitochondrial dysfunction. Only 71 patients met this criterion. The mitochondrial genome (mtDNA) could be sequenced only in 45 and the pathogenicity of 2 of the found changes was investigated using transmitochondrial cybrids. Three nucleotide changes in mtDNA that may be relevant and 3 with confirmed pathogenicity were identified but no mutations were found in the 13 nuclear genes analyzed. CONCLUSIONS: The mtDNA should be sequenced in patients with cardiac dysfunction accompanied by symptoms suggestive of MD; databases should be carefully and periodically screened to discard mitochondrial variants that could be associated with MD; functional assays are necessary to classify mitochondrial variants as pathogenic or polymorphic; and additional efforts must be made in order to identify nuclear genes that can explain some as yet uncharacterized molecular features of mitochondrial cardiomyopathy.


Subject(s)
Cardiomyopathies , Genome, Mitochondrial , Mitochondrial Diseases , Polymorphism, Genetic , Adolescent , Adult , Cardiomyopathies/complications , Cardiomyopathies/genetics , Cardiomyopathies/metabolism , Cardiomyopathies/pathology , Child , Child, Preschool , Female , Humans , Infant , Infant, Newborn , Male , Middle Aged , Mitochondrial Diseases/complications , Mitochondrial Diseases/genetics , Mitochondrial Diseases/metabolism , Mitochondrial Diseases/pathology , Retrospective Studies
18.
Mol Biol Cell ; 21(5): 739-52, 2010 Mar 01.
Article in English | MEDLINE | ID: mdl-20053681

ABSTRACT

H2AX phosphorylation at serine 139 (gammaH2AX) is a sensitive indicator of both DNA damage and DNA replication stress. Here we show that gammaH2AX formation is greatly enhanced in response to replication inhibitors but not ionizing radiation in HCT116 or SW480 cells depleted of Chk1. Although H2AX phosphorylation precedes the induction of apoptosis in such cells, our results suggest that cells containing gammaH2AX are not committed to death. gammaH2AX foci in these cells largely colocalize with RPA foci and their formation is dependent upon the essential replication helicase cofactor Cdc45, suggesting that H2AX phosphorylation occurs at sites of stalled forks. However Chk1-depleted cells released from replication inhibitors retain gammaH2AX foci and do not appear to resume replicative DNA synthesis. BrdU incorporation only occurs in a minority of Chk1-depleted cells containing gammaH2AX foci after release from thymidine arrest and, in cells incorporating BrdU, DNA synthesis does not occur at sites of gammaH2AX foci. Furthermore activated ATM and Chk2 persist in these cells. We propose that the gammaH2AX foci in Chk1-depleted cells may represent sites of persistent replication fork damage or abandonment that are unable to resume DNA synthesis but do not play a direct role in the Chk1 suppressed death pathway.


Subject(s)
DNA Replication , Histones/metabolism , Protein Kinases/metabolism , Apoptosis , Caspase 3/metabolism , Cell Cycle , Cell Cycle Proteins/chemistry , Cell Death , Cell Line, Tumor , Checkpoint Kinase 1 , Flow Cytometry/methods , Gene Expression Regulation, Neoplastic , Humans , Phosphorylation , RNA, Small Interfering/metabolism , Serine/chemistry
19.
PLoS Genet ; 5(1): e1000324, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19119425

ABSTRACT

The related PIK-like kinases Ataxia-Telangiectasia Mutated (ATM) and ATM- and Rad3-related (ATR) play major roles in the regulation of cellular responses to DNA damage or replication stress. The pro-apoptotic role of ATM and p53 in response to ionizing radiation (IR) has been widely investigated. Much less is known about the control of apoptosis following DNA replication stress. Recent work indicates that Chk1, the downstream phosphorylation target of ATR, protects cells from apoptosis induced by DNA replication inhibitors as well as IR. The aim of the work reported here was to determine the roles of ATM- and ATR-protein kinase cascades in the control of apoptosis following replication stress and the relationship between Chk1-suppressed apoptotic pathways responding to replication stress or IR. ATM and ATR/Chk1 signalling pathways were manipulated using siRNA-mediated depletions or specific inhibitors in two tumour cell lines or fibroblasts derived from patients with inherited mutations. We show that depletion of ATM or its downstream phosphorylation targets, NBS1 and BID, has relatively little effect on apoptosis induced by DNA replication inhibitors, while ATR or Chk1 depletion strongly enhances cell death induced by such agents in all cells tested. Furthermore, early events occurring after the disruption of DNA replication (accumulation of RPA foci and RPA34 hyperphosphorylation) in ATR- or Chk1-depleted cells committed to apoptosis are not detected in ATM-depleted cells. Unlike the Chk1-suppressed pathway responding to IR, the replication stress-triggered apoptotic pathway did not require ATM and is characterized by activation of caspase 3 in both p53-proficient and -deficient cells. Taken together, our results show that the ATR-Chk1 signalling pathway plays a major role in the regulation of death in response to DNA replication stress and that the Chk1-suppressed pathway protecting cells from replication stress is clearly distinguishable from that protecting cells from IR.


Subject(s)
Apoptosis , Caspase 3/metabolism , Caspase Inhibitors , Cell Cycle Proteins/metabolism , DNA Replication/physiology , Protein Kinases/metabolism , Protein Serine-Threonine Kinases/metabolism , Ataxia Telangiectasia Mutated Proteins , Caspase 3/genetics , Cell Line, Tumor , Checkpoint Kinase 1 , DNA Damage , DNA-Binding Proteins/metabolism , Humans , Radiation, Ionizing , Signal Transduction , Tumor Suppressor Proteins/metabolism
20.
J Proteomics ; 71(6): 592-600, 2009 Jan 30.
Article in English | MEDLINE | ID: mdl-18832053

ABSTRACT

Microtubule interfering agents (MIAs) are anti-tumor drugs that inhibit microtubule dynamics, while kinesin spindle protein (KSP) inhibitors are substances that block the formation of the bipolar spindle during mitosis. All these compounds cause G2/M arrest and cell death. Using 2D-PAGE followed by Nano-LC-ESI-Q-ToF analysis, we found that MIAs such as vincristine (Oncovin) or paclitaxel (Taxol) and KSP inhibitors such as S-tritil-l-cysteine induce the phosphorylation of the nuclear protein p54(nrb) in HeLa cells. Furthermore, we demonstrate that cisplatin (Platinol), an anti-tumor drug that does not cause M arrest, does not induce this modification. We show that the G2/M arrest induced by MIAs is required for p54(nrb) phosphorylation. Finally, we demonstrate that CDK activity is required for MIA-induced phosphorylation of p54(nrb).


Subject(s)
Antineoplastic Agents, Phytogenic/pharmacology , G2 Phase/physiology , Kinesins/metabolism , Mitosis/physiology , Nuclear Matrix-Associated Proteins/metabolism , Octamer Transcription Factors/metabolism , RNA-Binding Proteins/metabolism , Tubulin Modulators/pharmacology , Cell Line , Cisplatin/pharmacology , Cysteine/analogs & derivatives , Cysteine/pharmacology , DNA-Binding Proteins , Electrophoresis, Gel, Two-Dimensional , G2 Phase/drug effects , Humans , Kinesins/antagonists & inhibitors , Microtubules , Mitosis Modulators/pharmacology , Paclitaxel/pharmacology , Phosphorylation , Tandem Mass Spectrometry , Vincristine/pharmacology
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