Broadband acoustic characterization of backscattering from a rough stratification interface.

Broadband acoustic analysis of scattering from sharp density gradients in the water column generally treat the interfaces as smooth surfaces. However, these interfaces may exhibit roughness owing to external water column forcing and local convective processes. In this work we extend broadband backscatter analysis methods to consider interface roughness by drawing upon methods developed for sea surface and seabed acoustic backscattering. The one-dimensional acoustic model from Weidner and Weber [J. Acoust. Soc. Am. 150(6), 4353-4361 (2021)], which predicts a decay in the reflected wave amplitude from stratification interfaces with increasing frequency, was expanded for surface applications. The expanded model was used to analyze the scattered pressure field from interfaces over a range of surface roughness magnitudes. Analysis of model results indicate that stratification interface roughness, quantified by the root-mean-squared interface slope angle and root-mean-squared height of the interface, modifies the model-predicted frequency-dependent backscattering. A broadband acoustic inversion procedure to remotely measure the magnitude of the vertical extent of stratification gradients and the corresponding sound speed perturbation was defined. The broadband inversion method was tested on data collected in the Baltic Sea with well-documented, strong salinity-driven stratification.

Acoustic backscattering observations from non-spherical gas bubbles with ka between 0.03 and 4.4.

The study of gas bubbles in liquid media is of importance in many areas of research. Gas bubbles are often studied using in situ measurement techniques; however, acoustic inversion techniques have also been used to extract physical properties of gas bubbles. These inversion techniques rely on existing analytical scattering models; however, these models often assume that the gas bubbles are spherical in shape and have an equivalent bubble radius, a, that is small compared to the incident acoustic wavelength (ka ≪ 1), which is not always valid. This study aims to understand how the departure from these assumptions affects the acoustic backscattering cross section, σbs, of non-spherical gas bubbles. Experimental estimates of σbs of non-spherical gas bubbles of different sizes, with ka values ranging between 0.03 and 4.4, were compared to four commonly known analytical σbs models. All models performed equally at predicting σbs for ka smaller than 0.5; however, there was no model that better predicted the experimental estimates of σbs for ka larger than 0.5, regardless of bubble shape. Large variabilities in the experimental estimates of σbs are observed for ka larger than 0.5, which are caused by the variability in bubble shape and size, as well as the bubble's orientation.

An acoustic scattering model for stratification interfaces.

Stable fluid bodies, such as the ocean and atmosphere, are composed of a series of increasingly dense layers, defined by density stratification interfaces in which the medium properties (e.g., temperature, salinity) change. The intensity of the stratification between the layers influences the internal mixing dynamics and entrainment, facilitating the transport of dissolved constituents within the fluid medium. Acoustic systems offer the means for high resolution observations of these interfaces, which allow for continuous data collection over broad spatial scales. Here, a one-dimensional acoustic scattering model is presented for predicting acoustic backscatter from stratification interfaces, which is widely applicable to the acoustic water column data collected with ship-mounted sonars. Model predictions based on hydrographic profiles suggest that in many oceanic cases, the density gradient perturbations can be disregarded, and sound speed perturbations alone drive the majority of the acoustic scattering. A frequency-dependent scattering intensity based on the sharpness of the stratification interface is predicted by the model, suggesting a path to remote estimations of the physical medium properties through broadband acoustic inversion.

Broadband acoustic scattering from oblate hydrocarbon droplets.

Improved in situ quantification of oil in the marine environment is critical for informing models of fate and transport and evaluating the resiliency of marine communities to oil spills. Broadband acoustic backscatter has been used to quantify a variety of targets in the water column; from fish and planktonic organisms to gas bubbles and oceanic microstructure, and shows promise for use in quantifying oil droplets. Quantifying water column targets with broadband acoustic backscatter relies on accurate models of a target's frequency dependent target strength (TS), a function of the target's acoustic impedance, shape, and size. Previous acoustic quantification of oil droplets has assumed that droplets were spheres. In this study, broadband (100.5-422 kHz) acoustic backscatter from individual oil droplets was measured, and the frequency dependent TS compared to a model of acoustic scattering from fluid spheres and two models for more complex shapes. Droplets of three different crude oils, two medium oils, and one heavy oil were quantified and all droplets were oblate spheroids. The impact of the deviation from sphericity on the accuracy of each model was determined. If an inversion of the model for spherical droplets was used to estimate flux from acoustic observations, errors in the predicted volume of a droplet were between 30% and 50%. The heavy oil also showed deviations in predicted volume of 20%-40% when using the two models for more complex shapes.

Acoustically relevant properties of four crude oils at oceanographic temperatures and pressures.

Inversions of models of broadband acoustic scattering to detect and quantify weakly scattering targets, such as oil droplets in seawater, require precise knowledge of the physical properties that determine scattering. When the characteristic impedance contrast between a target and the surrounding medium is weak, small differences between the true and modeled impedance can cause significant errors in modeled scattering. For crude oil, currently available empirical models of density and sound speed are derived from measurements made at reservoir conditions (high temperature and pressure), which may not be relevant to oceanographic conditions due to phase changes in the oil. Measurements of the density and sound speed, as well as thermal characterization of phase changes via differential scanning calorimetry, of four crude oils at oceanographically relevant temperatures and pressures were made and compared to a commonly used empirical model for sound speed and density. Significant deviations between the measured and modeled values were found and different empirically fit models were developed. A literature review of sound speed data was also performed, and the innovative empirical model shows improvement over the commonly used empirical model for both the data measured here and the measurements in the literature.

Improved Visualization of Hydroacoustic Plumes Using the Split-Beam Aperture Coherence.

Natural seepage of methane into the oceans is considerable, and plays a role in the global carbon cycle. Estimating the amount of this greenhouse gas entering the water column is important in order to understand their environmental impact. In addition, leakage from man-made structures such as gas pipelines may have environmental and economical consequences and should be promptly detected. Split beam echo sounders (SBES) detect hydroacoustic plumes due to the significant contrast in acoustic impedance between water and free gas. SBES are also powerful tools for plume characterization, with the ability to provide absolute acoustic measurements, estimate bubble trajectories, and capture the frequency dependent response of bubbles. However, under challenging conditions such as deep water and considerable background noise, it can be difficult to detect the presence of gas seepage from the acoustic imagery alone. The spatial coherence of the wavefield measured across the split beam sectors, quantified by the coherence factor (CF), is a computationally simple, easily available quantity which complements the acoustic imagery and may ease the ability to automatically or visually detect bubbles in the water column. We demonstrate the benefits of CF processing using SBES data from the Hudson Canyon, acquired using the Simrad EK80 SBES. We observe that hydroacoustic plumes appear more clearly defined and are easier to detect in the CF imagery than in the acoustic backscatter images.

Acoustic Mapping of Thermohaline Staircases in the Arctic Ocean.

Although there is enough heat contained in inflowing warm Atlantic Ocean water to melt all Arctic sea ice within a few years, a cold halocline limits upward heat transport from the Atlantic water. The amount of heat that penetrates the halocline to reach the sea ice is not well known, but vertical heat transport through the halocline layer can significantly increase in the presence of double diffusive convection. Such convection can occur when salinity and temperature gradients share the same sign, often resulting in the formation of thermohaline staircases. Staircase structures in the Arctic Ocean have been previously identified and the associated double diffusive convection has been suggested to influence the Arctic Ocean in general and the fate of the Arctic sea ice cover in particular. A central challenge to understanding the role of double diffusive convection in vertical heat transport is one of observation. Here, we use broadband echo sounders to characterize Arctic thermohaline staircases at their full vertical and horizontal resolution over large spatial areas (100 s of kms). In doing so, we offer new insight into the mechanism of thermohaline staircase evolution and scale, and hence fluxes, with implications for understanding ocean mixing processes and ocean-sea ice interactions.

An extended surface target for high-frequency multibeam echo sounder calibration.

An extended calibration target has been developed for calibrating the intensity output of a multibeam echo sounder (MBES). The target was constructed of chain links arranged similar to a curtain, providing an extended surface target with a mean scattering strength of -17.8 dB at 200 kHz. The target was used to calibrate a 200 kHz MBES, and the MBES was subsequently used to collect seafloor backscatter over sand and gravel seafloors. Field results were compared with calibrated split-beam echo sounder measurements at an incidence angle of 45°. The results suggest that the chain target is a viable MBES calibration tool.

Observations of backscatter from sand and gravel seafloors between 170 and 250 kHz.

Interpreting observations of frequency-dependence in backscatter from the seafloor offers many challenges, either because multiple frequencies are used for different observations that will later be merged or simply because seafloor scattering models are not well-understood above 100 kHz. Hindering the understanding of these observations is the paucity of reported, calibrated acoustic measurements above 100 kHz. This manuscript seeks to help elucidate the linkages between seafloor properties and frequency-dependent seafloor backscatter by describing observations of backscatter collected from sand, gravel, and bedrock seafloors at frequencies between 170 and 250 kHz and at a grazing angle of 45°. Overall, the frequency dependence appeared weak for all seafloor types, with a slight increase in seafloor scattering strength with increasing frequency for an area with unimodal, very poorly to moderately well sorted, slightly granular to granular medium sand with significant amounts of shell debris and a slight decrease in all other locations.

miR-28-5p promotes chromosomal instability in VHL-associated cancers by inhibiting Mad2 translation.

Chromosomal instability enables tumor development, enabled in part by aberrant expression of the mitotic checkpoint protein Mad2. Here we identify a novel regulatory mechanism for Mad2 expression involving miR-28-5p-mediated inhibition of Mad2 translation, and we demonstrate that this mechanism is triggered by inactivation of the tumor suppressor VHL, the most common event in clear cell renal cell carcinoma (ccRCC). In VHL-positive cancer cells, enhanced expression of miR-28-5p diminished Mad2 levels and promoted checkpoint weakness and chromosomal instability. Conversely, in checkpoint-deficient VHL-negative renal carcinoma cells, inhibition of miR-28-5p function restored Mad2 levels, mitotic checkpoint proficiency, and chromosomal stability. Notably, chromosome missegregation errors and aneuploidy that were produced in a mouse model of acute renal injury (as a result of kidney-specific ablation of pVHL function) were reverted in vivo also by genetic inhibition of miR-28-5p. Finally, bioinformatic analyses in human ccRCC associated loss of VHL with increased miR-28-5p expression and chromosomal instability. Together, our results defined miR-28-5p as a critical regulator of Mad2 translation and mitotic checkpoint function. By identifying a potential mediator of chromosomal instability in VHL-associated cancers, our work also suggests a novel microRNA-based therapeutic strategy to target aneuploid cells in VHL-associated cancers.

Tumor suppressor VHL functions in the control of mitotic fidelity.

The von Hippel-Lindau (VHL) tumor suppressor protein pVHL is commonly mutated in clear cell renal cell carcinoma (ccRCC) and has been implicated in the control of multiple cellular processes that might be linked to tumor suppression, including promoting proper spindle orientation and chromosomal stability. However, it is unclear whether pVHL exerts these mitotic regulatory functions in vivo as well. Here, we applied ischemic kidney injury to stimulate cell division in otherwise quiescent mouse adult kidneys. We show that in the short term (5.5 days after surgery), Vhl-deficient kidney cells demonstrate both spindle misorientation and aneuploidy. The spindle misorientation phenotype encompassed changes in directed cell division, which may manifest in the development of cystic lesions, whereas the aneuploidy phenotype involved the occurrence of lagging chromosomes but not chromosome bridges, indicative of mitotic checkpoint impairment. Intriguingly, in the long term (4 months after the ischemic insult), Vhl-deficient kidneys displayed a heterogeneous pattern of ccRCC precursor lesions, including cysts, clear cell-type cells, and dysplasia. Together, these data provide direct evidence for a key role of pVHL in mediating oriented cell division and faithful mitotic checkpoint function in the renal epithelium, emphasizing the importance of pVHL as a controller of mitotic fidelity in vivo.

Near resonance acoustic scattering from organized schools of juvenile Atlantic bluefin tuna (Thunnus thynnus).

Schools of Atlantic bluefin tuna (Thunnus thynnus) can exhibit highly organized spatial structure within the school. This structure was quantified for dome shaped schools using both aerial imagery collected from a commercial spotter plane and 400 kHz multibeam echo sounder data collected on a fishing vessel in 2009 in Cape Cod Bay, MA. Observations from one school, containing an estimated 263 fish within an approximately ellipsoidal volume of 1900 m(3), were used to seed an acoustic model that estimated the school target strength at frequencies between 10 and 2000 Hz. The fish's swimbladder resonance was estimated to occur at approximately 50 Hz. The acoustic model examined single and multiple scattering solutions and also a completely incoherent summation of scattering responses from the fish. Three levels of structure within the school were examined, starting with fish locations that were constrained by the school boundaries but placed according to a Poisson process, then incorporating a constraint on the distance to the nearest neighbor, and finally adding a constraint on the bearing to the nearest neighbor. Results suggest that both multiple scattering and spatial organization within the school should be considered when estimating the target strength of schools similar to the ones considered here.

Scientific basis for safely shutting in the Macondo Well after the April 20, 2010 Deepwater Horizon blowout.

As part of the government response to the Deepwater Horizon blowout, a Well Integrity Team evaluated the geologic hazards of shutting in the Macondo Well at the seafloor and determined the conditions under which it could safely be undertaken. Of particular concern was the possibility that, under the anticipated high shut-in pressures, oil could leak out of the well casing below the seafloor. Such a leak could lead to new geologic pathways for hydrocarbon release to the Gulf of Mexico. Evaluating this hazard required analyses of 2D and 3D seismic surveys, seafloor bathymetry, sediment properties, geophysical well logs, and drilling data to assess the geological, hydrological, and geomechanical conditions around the Macondo Well. After the well was successfully capped and shut in on July 15, 2010, a variety of monitoring activities were used to assess subsurface well integrity. These activities included acquisition of wellhead pressure data, marine multichannel seismic profiles, seafloor and water-column sonar surveys, and wellhead visual/acoustic monitoring. These data showed that the Macondo Well was not leaking after shut in, and therefore, it could remain safely shut until reservoir pressures were suppressed (killed) with heavy drilling mud and the well was sealed with cement.

Salmonella gut invasion involves TTSS-2-dependent epithelial traversal, basolateral exit, and uptake by epithelium-sampling lamina propria phagocytes.

Salmonella Typhimurium causes diarrhea by infecting the epithelium and lamina propria of the intestinal mucosa and by secreting various effector proteins through type III secretion systems (TTSSs). However, the mechanisms by which Salmonella transverses the epithelium and is subsequently released into the lamina propria are poorly understood. Using a murine Salmonella-diarrhea model and in vivo microscopy, we show that epithelial traversal requires TTSS-1-mediated invasion and TTSS-2-dependent trafficking to the basolateral side. After being released into the lamina propria, the bacterium is transiently extracellular before being taken up by phagocytes, including CD11c(+)CX(3)CR1(high) monocytic phagocytes (MPs), which were found to constitutively sample cellular material shed from the basolateral side of the epithelium. Thus, Salmonella infects the cecal mucsa through a step-wise process wherein the bacterium transverses the epithelium through TTSS-2-dependent trafficking and then likely exploits lamina propria MPs, which are sampling the epithelium, to enter and replicate within the host.

Estimating oil concentration and flow rate with calibrated vessel-mounted acoustic echo sounders.

As part of a larger program aimed at evaluating acoustic techniques for mapping the distribution of subsurface oil and gas associated with the Deepwater Horizon-Macondo oil spill, observations were made on June 24 and 25, 2010 using vessel-mounted calibrated single-beam echo sounders on the National Oceanic and Atmospheric Administration ship Thomas Jefferson. Coincident with visual observations of oil at the sea surface, the 200-kHz echo sounder showed anomalously high-volume scattering strength in the upper 200 m on the western side of the wellhead, more than 100 times higher than the surrounding waters at 1,800-m distance from the wellhead, and weakening with increasing distance out to 5,000 m. Similar high-volume scattering anomalies were not observed at 12 or 38 kHz, although observations of anomalously low-volume scattering strength were made in the deep scattering layer at these frequencies at approximately the same locations. Together with observations of ocean currents, the acoustic observations are consistent with a rising plume of small (< 1-mm radius) oil droplets. Using simplistic but reasonable assumptions about the properties of the oil droplets, an estimate of the flow rate was made that is remarkably consistent with those made at the wellhead by other means. The uncertainty in this acoustically derived estimate is high due to lack of knowledge of the size distribution and rise speed of the oil droplets. If properly constrained, these types of acoustic measurements can be used to rapidly estimate the flow rate of oil reaching the surface over large temporal and spatial scales.

Consistency in statistical moments as a test for bubble cloud clustering.

Frequency dependent measurements of attenuation and/or sound speed through clouds of gas bubbles in liquids are often inverted to find the bubble size distribution and the void fraction of gas. The inversions are often done using an effective medium theory as a forward model under the assumption that the bubble positions are Poisson distributed (i.e., statistically independent). Under circumstances in which single scattering does not adequately describe the pressure field, the assumption of independence in position can yield large errors when clustering is present, leading to errors in the inverted bubble size distribution. It is difficult, however, to determine the existence of clustering in bubble clouds without the use of specialized acoustic or optical imaging equipment. A method is described here in which the existence of bubble clustering can be identified by examining the consistency between the first two statistical moments of multiple frequency acoustic measurements.

A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico.

Methane was the most abundant hydrocarbon released during the 2010 Deepwater Horizon oil spill in the Gulf of Mexico. Beyond relevancy to this anthropogenic event, this methane release simulates a rapid and relatively short-term natural release from hydrates into deep water. Based on methane and oxygen distributions measured at 207 stations throughout the affected region, we find that within ~120 days from the onset of release ~3.0 × 10(10) to 3.9 × 10(10) moles of oxygen were respired, primarily by methanotrophs, and left behind a residual microbial community containing methanotrophic bacteria. We suggest that a vigorous deepwater bacterial bloom respired nearly all the released methane within this time, and that by analogy, large-scale releases of methane from hydrate in the deep ocean are likely to be met by a similarly rapid methanotrophic response.

Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria.

The intestinal ecosystem is formed by a complex, yet highly characteristic microbial community. The parameters defining whether this community permits invasion of a new bacterial species are unclear. In particular, inhibition of enteropathogen infection by the gut microbiota ( = colonization resistance) is poorly understood. To analyze the mechanisms of microbiota-mediated protection from Salmonella enterica induced enterocolitis, we used a mouse infection model and large scale high-throughput pyrosequencing. In contrast to conventional mice (CON), mice with a gut microbiota of low complexity (LCM) were highly susceptible to S. enterica induced colonization and enterocolitis. Colonization resistance was partially restored in LCM-animals by co-housing with conventional mice for 21 days (LCM(con21)). 16S rRNA sequence analysis comparing LCM, LCM(con21) and CON gut microbiota revealed that gut microbiota complexity increased upon conventionalization and correlated with increased resistance to S. enterica infection. Comparative microbiota analysis of mice with varying degrees of colonization resistance allowed us to identify intestinal ecosystem characteristics associated with susceptibility to S. enterica infection. Moreover, this system enabled us to gain further insights into the general principles of gut ecosystem invasion by non-pathogenic, commensal bacteria. Mice harboring high commensal E. coli densities were more susceptible to S. enterica induced gut inflammation. Similarly, mice with high titers of Lactobacilli were more efficiently colonized by a commensal Lactobacillus reuteri(RR) strain after oral inoculation. Upon examination of 16S rRNA sequence data from 9 CON mice we found that closely related phylotypes generally display significantly correlated abundances (co-occurrence), more so than distantly related phylotypes. Thus, in essence, the presence of closely related species can increase the chance of invasion of newly incoming species into the gut ecosystem. We provide evidence that this principle might be of general validity for invasion of bacteria in preformed gut ecosystems. This might be of relevance for human enteropathogen infections as well as therapeutic use of probiotic commensal bacteria.

Observations of clustering inside oceanic bubble clouds and the effect on short-range acoustic propagation.

It has recently been shown [Weber, T. C. et al. (2007). "Acoustic propagation through clustered bubble clouds," IEEE J. Ocean. Eng. 32, 513-523] that gas bubble clustering plays a role in determining the acoustic field characteristics of bubbly fluids. In particular, it has been shown that clustering changes the bubble-induced attenuation as well as the ping-to-ping variability in the acoustic field. The degree to which bubble clustering exists in nature, however, is unknown. This paper describes a method for quantifying bubble clustering using a high frequency (400 kHz) multibeam sonar, and reports on observations of near-surface bubble clustering during a storm (14.6 m/s wind speed) in the Gulf of Maine. The multibeam sonar data are analyzed to estimate the pair correlation function, a measure of bubble clustering. In order to account for clustering in the mean acoustic field, a modification to the effective medium wave number is made. With this modification, the multibeam sonar observations are used to predict the effect of clustering on the attenuation of the mean field for short-range propagation (1 m) at frequencies between 10 and 350 kHz. Results for this specific case show that clustering can cause the attenuation to change by 20%-80% over this frequency range.

Acoustic scattering from mud volcanoes and carbonate mounds.

Submarine mud volcanoes occur in many parts of the world's oceans and form an aperture for gas and fluidized mud emission from within the earth's crust. Their characteristics are of considerable interest to the geology, geophysics, geochemistry, and underwater acoustics communities. For the latter, mud volcanoes are of interest in part because they pose a potential source of clutter for active sonar. Close-range (single-interaction) scattering measurements from a mud volcano in the Straits of Sicily show scattering 10-15 dB above the background. Three hypotheses were examined concerning the scattering mechanism: (1) gas entrained in sediment at/near mud volcano, (2) gas bubbles and/or particulates (emitted) in the water column, (3) the carbonate bio-construction covering the mud volcano edifice. The experimental evidence, including visual, acoustic, and nonacoustic sensors, rules out the second hypothesis (at least during the observation time) and suggests that, for this particular mud volcano the dominant mechanism is associated with carbonate chimneys on the mud volcano. In terms of scattering levels, target strengths of 4-14 dB were observed from 800 to 3600 Hz for a monostatic geometry with grazing angles of 3-5 degrees. Similar target strengths were measured for vertically bistatic paths with incident and scattered grazing angles of 3-5 degrees and 33-50 degrees, respectively.