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1.
PLoS Biol ; 21(8): e3002251, 2023 08.
Article in English | MEDLINE | ID: mdl-37607211

ABSTRACT

Modern advances in DNA sequencing hold the promise of facilitating descriptions of new organisms at ever finer precision but have come with challenges as the major Codes of bionomenclature contain poorly defined requirements for species and subspecies diagnoses (henceforth, species diagnoses), which is particularly problematic for DNA-based taxonomy. We, the commissioners of the International Commission on Zoological Nomenclature, advocate a tightening of the definition of "species diagnosis" in future editions of Codes of bionomenclature, for example, through the introduction of requirements for specific information on the character states of differentiating traits in comparison with similar species. Such new provisions would enhance taxonomic standards and ensure that all diagnoses, including DNA-based ones, contain adequate taxonomic context. Our recommendations are intended to spur discussion among biologists, as broad community consensus is critical ahead of the implementation of new editions of the International Code of Zoological Nomenclature and other Codes of bionomenclature.


Subject(s)
DNA , DNA/genetics , Phenotype , Sequence Analysis, DNA
2.
Thomson, Scott A; Pyle, Richard L; Ahyong, Shane T; Alonso-Zarazaga, Miguel; Ammirati, Joe; Araya, Juan Francisco; Ascher, John S; Audisio, Tracy Lynn; Azevedo-Santos, Valter M; Bailly, Nicolas; Baker, William J; Balke, Michael; Barclay, Maxwell V. L; Barrett, Russell L; Benine, Ricardo C; Bickerstaff, James R. M; Bouchard, Patrice; Bour, Roger; Bourgoin, Thierry; Boyko, Christopher B; Breure, Abraham S. H; Brothers, Denis J; Byng, James W; Campbell, David; Ceriaco, Luis M. P; Cernak, Istvan; Cerretti, Pierfilippo; Chang, Chih-Han; Cho, Soowon; Copus, Joshua M; Costello, Mark J; Cseh, Andras; Csuzdi, Csaba; Culham, Alastair; D'Elia, Guillermo; d'Acoz, Cedric d'Udekem; Daneliya, Mikhail E; Dekker, Rene; Dickinson, Edward C; Dickinson, Timothy A; van Dijk, Peter Paul; Dijkstra, Klaas-Douwe B; Dima, Balint; Dmitriev, Dmitry A; Duistermaat, Leni; Dumbacher, John P; Eiserhardt, Wolf L; Ekrem, Torbjorn; Evenhuis, Neal L; Faille, Arnaud; Fernandez-Trianam, Jose L; Fiesler, Emile; Fishbein, Mark; Fordham, Barry G; Freitas, Andre V. L; Friol, Natalia R; Fritz, Uwe; Froslev, Tobias; Funk, Vicki A; Gaimari, Stephen D; Garbino, Guilherme S. T; Garraffoni, Andre R. S; Geml, Jozsef; Gill, Anthony C; Gray, Alan; Grazziotin, Felipe Gobbi; Greenslade, Penelope; Gutierrez, Eliecer E; Harvey, Mark S; Hazevoet, Cornelis J; He, Kai; He, Xiaolan; Helfer, Stephan; Helgen, Kristofer M; van Heteren, Anneke H; Garcia, Francisco Hita; Holstein, Norbert; Horvath, Margit K; Hovenkamp, Peter H; Hwang, Wei Song; Hyvonen, Jaakko; Islam, Melissa B; Iverson, John B; Ivie, Michael A; Jaafar, Zeehan; Jackson, Morgan D; Jayat, J. Pablo; Johnson, Norman F; Kaiser, Hinrich; Klitgard, Bente B; Knapp, Daniel G; Kojima, Jun-ichi; Koljalg, Urmas; Kontschan, Jeno; Krell, Frank-Thorsten; Krisai-Greilhuberm, Irmgard; Kullander, Sven; Latelle, Leonardo; Lattke, John E; Lencioni, Valeria; Lewis, Gwilym P; Lhano, Marcos G; Lujan, Nathan K; Luksenburg, Jolanda A; Mariaux, Jean; Marinho-Filho, Jader; Marshall, Christopher J; Mate, Jason F; McDonough, Molly M; Michel, Ellinor; Miranda, Vitor F. O; Mitroiulm, Mircea-Dan; Molinari, Jesus; Monks, Scott; Moore, Abigail J; Moratelli, Ricardo; Muranyi, David; Nakano, Takafumi; Nikolaeva, Svetlana; Noyes, John; Ohl, Michael; Oleas, Nora H; Orrell, Thomas; Pall-Gergele, Barna; Pape, Thomas; Papp, Viktor; Parenti, Lynne R; Patterson, David; Pavlinov, Igor Ya; Pine, Ronald H; Poczai, Peter; Prado, Jefferson; Prathapan, Divakaran; Rabeler, Richard K; Randall, John E; Rheindt, Frank E; Rhodin, Anders G. J; Rodriguez, Sara M; Rogers, D. Christopher; Roque, Fabio de O; Rowe, Kevin C; Ruedas, Luis A; Salazar-Bravo, Jorge; Salvador, Rodrigo B; Sangster, George; Sarmiento, Carlos E; Schigel, Dmitry S; Schmidt, Stefan; Schueler, Frederick W; Segers, Hendrik; Snow, Neil; Souza-Dias, Pedro G. B; Stals, Riaan; Stenroos, Soili; Stone, R. Douglas; Sturm, Charles F; Stys, Pavel; Teta, Pablo; Thomas, Daniel C; Timm, Robert M; Tindall, Brian J; Todd, Jonathan A; Triebel, Dagmar; Valdecasas, Antonio G; Vizzini, Alfredo; Vorontsova, Maria S; de Vos, Jurriaan M; Wagner, Philipp; Watling, Les; Weakley, Alan; Welter-Schultes, Francisco; Whitmore, Daniel; Wilding, Nicholas; Will, Kipling; Williams, Jason; Wilson, Karen; Winston, Judith E; Wuster, Wolfgang; Yanega, Douglas; Yeates, David K; Zaher, Hussam; Zhang, Guanyang; Zhang, Zhi-Qiang; Zhou, Hong-Zhang.
PLoS. Biol. ; 16(3): e2005075, 2018.
Article in English | Sec. Est. Saúde SP, SESSP-IBPROD, Sec. Est. Saúde SP | ID: but-ib15045
3.
Zookeys ; (550): 173-87, 2016.
Article in English | MEDLINE | ID: mdl-26877658

ABSTRACT

This study is aimed to shed light on the reliability of Sherborn's Index Animalium in terms of modern usage. The AnimalBase project spent several years' worth of teamwork dedicated to extracting new names from original sources in the period ranging from 1757 to the mid-1790s. This allowed us to closely analyse Sherborn's work and verify the completeness and correctness of his record. We found the reliability of Sherborn's resource generally very high, but in some special situations the reliability was reduced due to systematic errors or incompleteness in source material. Index Animalium is commonly used by taxonomists today who rely strongly on Sherborn's record; our study is directed most pointedly at those users. We recommend paying special attention to the situations where we found that Sherborn's data should be read with caution. In addition to some categories of systematic errors and mistakes that were Sherborn's own responsibility, readers should also take into account that nomenclatural rules have been changed or refined in the past 100 years, and that Sherborn's resource could eventually present outdated information. One of our main conclusions is that error rates in nomenclatoral compilations tend to be lower if one single and highly experienced person such as Sherborn carries out the work, than if a team is trying to do the task. Based on our experience with extracting names from original sources we came to the conclusion that error rates in such a manual work on names in a list are difficult to reduce below 2-4%. We suggest this is a natural limit and a point of diminishing returns for projects of this nature.

4.
PLoS One ; 9(6): e100366, 2014.
Article in English | MEDLINE | ID: mdl-24964101

ABSTRACT

Drilus beetle larvae (Coleoptera: Elateridae) are specialized predators of land snails. Here, we describe various aspects of the predator-prey interactions between multiple Drilus species attacking multiple Albinaria (Gastropoda: Clausiliidae) species in Greece. We observe that Drilus species may be facultative or obligate Albinaria-specialists. We map geographically varying predation rates in Crete, where on average 24% of empty shells carry fatal Drilus bore holes. We also provide first-hand observations and video-footage of prey entry and exit strategies of the Drilus larvae, and evaluate the potential mutual evolutionary impacts. We find limited evidence for an effect of shell features and snail behavioral traits on inter- and intra-specifically differing predation rates. We also find that Drilus predators adjust their predation behavior based on specific shell traits of the prey. In conclusion, we suggest that, with these baseline data, this interesting predator-prey system will be available for further, detailed more evolutionary ecology studies.


Subject(s)
Coleoptera , Predatory Behavior , Snails , Animals , Biodiversity , Evolution, Molecular , Greece , Larva
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