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1.
Antimicrob Agents Chemother ; 50(11): 3809-15, 2006 Nov.
Article in English | MEDLINE | ID: mdl-16940075

ABSTRACT

Geographic spread of highly pathogenic avian H5N1 influenza viruses may give rise to an influenza pandemic. During the first months of a pandemic, control measures would rely mainly on antiviral drugs, such as the neuraminidase (NA) inhibitors oseltamivir and zanamivir. In this study, we compare the sensitivities to oseltamivir of the NAs of several highly pathogenic H5N1 viruses isolated in Asia from 1997 to 2005. The corresponding 50% inhibitory concentrations were determined using a standard in vitro NA inhibition assay. The K(m) for the substrate and the affinity for the inhibitor (K(i)) of NA were determined for a 1997 and a 2005 virus, using an NA inhibition assay on cells transiently expressing the viral enzyme. Our data show that the sensitivities of the NAs of H5N1 viruses isolated in 2004 and 2005 to oseltamivir are about 10-fold higher than those of earlier H5N1 viruses or currently circulating H1N1 viruses. Three-dimensional modeling of the N1 protein predicted that Glu248Gly and Tyr252His changes could account for increased sensitivity. Our data indicate that genetic variation in the absence of any drug-selective pressure may result in significant variations in sensitivity to anti-NA drugs. Although the clinical relevance of a 10-fold increase in the sensitivity of NA to oseltamivir needs to be investigated further, the possibility that sensitivity to anti-NA drugs could increase (or possibly decrease) significantly, even in the absence of treatment, underscores the need for continuous evaluation of the impact of genetic drift on this parameter, especially for influenza viruses with pandemic potential.


Subject(s)
Antiviral Agents/pharmacology , Influenza A Virus, H5N1 Subtype/drug effects , Oseltamivir/pharmacology , Binding, Competitive/drug effects , Cell Line , Enzyme Inhibitors/pharmacology , Humans , Influenza A Virus, H5N1 Subtype/classification , Models, Molecular , Neuraminidase/antagonists & inhibitors , Neuraminidase/genetics , Phylogeny , RNA/biosynthesis , RNA/genetics , Recombinant Proteins/antagonists & inhibitors , Recombinant Proteins/genetics
2.
Presse Med ; 34(6): 425-30, 2005 Mar 26.
Article in French | MEDLINE | ID: mdl-15902872

ABSTRACT

OBJECTIVE: Complement protein deficiency of the classical pathway or in proteins of the alternate pathway is rare but considerably increase the risk of infection with Neisseria meningitidis. The aim of this study was to determine the clinical criteria of the group at risk. METHODS: Retrospective study of the clinical and biological data of patients exhibiting complement protein deficiency associated with one or several N. meningitidis infections. RESULTS: Forty cases were studied, including 35 classical pathway protein deficiencies, with a predominance of C7 deficiency, 3 properdin deficiencies and 2 acquired C3 deficiencies. More than 60% of the patients exhibited recurrent N. meningitidis infections. Serogroups of rare strains were isolated in 50% of cases. Properdin deficiency was associated with a fulminating form in 2 cases out of 3. The age at onset of the first manifestations varied from 2 months to 32 years. CONCLUSION: A deficiency must be systematically searched for in all patients presenting with a N. meningitidis infection before the age of 6 months or after the age of 5 years. Identification of deficient patients permits the proposal of family screening and appropriate prophylaxis, including preventive vaccination.


Subject(s)
Complement System Proteins/deficiency , Meningococcal Infections/etiology , Neisseria meningitidis/pathogenicity , Adolescent , Child , Child, Preschool , Female , Humans , Infant , Infant, Newborn , Male , Retrospective Studies , Risk Factors
4.
Artif Organs ; 24(12): 939-45, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11121973

ABSTRACT

Bone morphogenetic protein (BMP) is known to require a suitable carrier to induce ectopic bone formation in vivo. To evaluate the suitability of DegraPol-foam, a degradable, elastic, and highly porous polyesterurethane foam as carrier for BMP-induced bone formation, a fraction containing all the active BMPs (BMP cocktail) was combined with DegraPol-foam and implanted subcutaneously into rats. DegraPol-BMP scaffolds were found to induce osteogenesis 2 weeks after implantation as evidenced by morphological and biochemical observations. In addition, the osteoblast-compatibility of DegraPol-foam was examined here. In vitro, primary rat osteoblasts and osteoblasts from the human cell line (HFO1) attached and proliferated preferentially on the surface of the DegraPol-foam. Both cell types exhibited relatively high attachment and low doubling time that resulted in a confluent cell multilayer with spindle-shaped morphology on the surface of the foam. Osteoblasts produced high concentrations of collagen type I and osteocalcin, and expressed increasing levels of alkaline phosphatase (ALP) activity. Taken collectively, both osteoblasts from rat tibia and from the human cell line HFO1 showed high cell attachment and growth, and preserved their phenotype. The geometrical structure of DegraPol is a suitable carrier for BMP for the induction of bone formation.


Subject(s)
Bone Morphogenetic Proteins/administration & dosage , Bone Substitutes , Osteogenesis , Polyesters , Polyurethanes , Absorbable Implants , Alkaline Phosphatase/metabolism , Animals , Cell Division , Cell Line , Collagen/biosynthesis , Drug Carriers , Humans , Male , Osteoblasts/cytology , Osteoblasts/metabolism , Osteocalcin/biosynthesis , Porosity , Rats , Rats, Wistar
5.
J Biomater Sci Polym Ed ; 11(8): 787-800, 2000.
Article in English | MEDLINE | ID: mdl-11211092

ABSTRACT

The biofunctionality of osteoblasts cultured on DegraPol-foam, a biodegradable, elastic, and highly porous polyesterurethane-foam, was determined here to examine the possible use of this structure as bone repair material. Osteoblasts from rat tibia and from the cell line (MC3T3-E1) exhibited relatively high attachment and low doubling time that result in a confluent cell multilayer on the surface of the foam. They produced high concentrations of collagen type I and osteocalcin, and expressed increasing alkaline phosphatase activity. Exposure to 1,25-dihydroxy vitamin D (Vit. D) increased dose- and time-dependent alkaline phosphatase activity and osteocalcin concentration, and decreased the level of collagen type I and cell density. Maximal effects of Vit. D on alkaline phosphatase activity (2.2 fold), osteocalcin (1.5 fold), collagen type I (50% reduction), and on cell density (35% reduction) were found at 100 ng Vit. D ml(-1). Osteoblasts cultured on DegraPol-foam in the presence of Vit. D exhibited more spreading and less spindle-like morphology than cells cultured in the absence of Vit. D. Cell ingrowth into the pores of the foam was not affected by Vit. D treatment. Taken collectively, the osteoblasts, capability of responding to Vit. D confirms the osteoblast compatibility of DegraPol-foam and the possible use of this scaffold in the bone healing process.


Subject(s)
Bone Substitutes/pharmacology , Cell Culture Techniques/methods , Osteoblasts/cytology , Polyesters/pharmacology , Polyurethanes/pharmacology , Alkaline Phosphatase/metabolism , Animals , Bone Substitutes/chemistry , Cell Adhesion , Cell Division/drug effects , Cell Line , Collagen/biosynthesis , Dose-Response Relationship, Drug , Fluorescent Antibody Technique, Indirect , Male , Microscopy, Electron, Scanning , Osteoblasts/physiology , Osteoblasts/ultrastructure , Osteocalcin/biosynthesis , Phenotype , Polyesters/chemistry , Polyurethanes/chemistry , Rats , Rats, Sprague-Dawley , Time Factors , Vitamin D/pharmacology
6.
J Biomater Sci Polym Ed ; 10(11): 1107-19, 1999.
Article in English | MEDLINE | ID: mdl-10606029

ABSTRACT

Histological and biochemical investigations were carried out in order to evaluate the chondrocyte compatibility of a recently developed biodegradable polyesterurethane-foam (DegraPol-foam). Therefore, cell adhesion, cell growth, and the preservation of chondrocyte phenotype was measured in rat xyphoid chondrocytes seeded on DegraPol-foam. Chondrocytes, isolated from xyphoids of adult male rats, exhibited relatively high cell adhesion on DegraPol-foam (about 60% of that found on TCPS). Scanning electron microscopy (SEM) showed that chondrocytes grew on the surface and into the open cell pores of the foam. Morphologically, cells found on the surface of the foam exhibited a flat cell appearance and built a confluent cell multilayer. In contrast, the interior of the foam cells showed rounded morphology in cell aggregates and cell islets. In addition, chondrocytes proliferated on the DegraPol-foam (doubling-time of about 12.5 days) and preserved their phenotype for up to 14 days. Compared to freshly isolated chondrocytes, cells seeded on the foam produced high concentrations of collagen type II for up to 2 weeks: the ratio of type II/I collagen was 1.2-1.4 fold higher than the ratio found in freshly isolated cells. No significant difference was observed in chondroitin sulfate levels produced by freshly isolated cells and cells cultured on DegraPol-foam for up to 14 days. To sum up, our results indicate that DegraPol-foam is a compatible substrate for chondrocytes.


Subject(s)
Bone Substitutes/pharmacology , Cartilage/cytology , Polyesters/pharmacology , Polyurethanes/pharmacology , 3T3 Cells/cytology , 3T3 Cells/drug effects , Animals , Bone Substitutes/chemistry , Cartilage/drug effects , Cartilage/metabolism , Cell Adhesion/drug effects , Cell Division/drug effects , Cell Size , Cells, Cultured , Chondroitin Sulfates/metabolism , Male , Materials Testing , Mice , Microscopy, Electron, Scanning , Osteoblasts/cytology , Osteoblasts/drug effects , Phenotype , Polyesters/chemistry , Polyurethanes/chemistry , Rats , Rats, Sprague-Dawley , Xiphoid Bone/cytology
7.
J Biomed Mater Res ; 39(4): 594-602, 1998 Mar 15.
Article in English | MEDLINE | ID: mdl-9492221

ABSTRACT

Recently, a new class of biodegradable PHB-based polyesterurethane (DegraPol/btc) has been prepared and found to exhibit favorable cell and tissue compatibility. The present study has been designed to evaluate the response of primary isolated rat tibia osteoblasts to small crystalline particles of short-chain poly[(R)-3-hydroxybutyric acid] (PHB-P diameter: 2-20 microm), of fluorescent-labeled analogs (DPHP-P), and of lysine methyl ester as possible degradation products of DegraPol/btc. Observations made using confocal microscopy clearly indicate that osteoblasts have the capability of taking up PHB-P particles. Although in single-cell analysis the number of DPHB-P-positive osteoblasts gradually increased up to 16 days, the fluorescence intensity per osteoblast increased only during the first 4 h after DPHB-P incubation, and then it retained the 4 h level up to 16 days. No significant change in the production levels of collagen type I and osteocalcin was detectable after treatment with low concentrations of PHB-P for up to 32 days. In contrast, a time- and dose-dependent alteration of the alkaline phosphatase (ALP) activity was found. Maximal activity was measured after 4 days of treatment with 2 microg of PHB-P/mL (170% of control cells). Rat peritoneal macrophages co-cultured with osteoblasts in a transwell culture system mimicked the observed PHB-P induced ALP elevation. Therefore, the PHB-P-induced ALP increase could be the result of direct or indirect stimulation of osteoblasts, possibly via soluble factors produced by contaminating osteoclasts. Taken collectively, the data demonstrate that osteoblasts are capable of phagocytosing PHB-P and that this process is accompanied at low PHB-P concentrations by dose- and time-dependent alteration of alkaline phosphatase activity but not of collagen type I or osteocalcin.


Subject(s)
Biocompatible Materials , Osteoblasts/immunology , Phagocytosis , Polyesters , Urethane , Alkaline Phosphatase/metabolism , Animals , Cell Division , Cells, Cultured , Macrophages/immunology , Microscopy, Electron, Scanning , Osteoblasts/enzymology , Osteoblasts/ultrastructure , Phenotype , Porosity , Prohibitins , Rats
8.
J Mater Sci Mater Med ; 8(8): 497-505, 1997 Aug.
Article in English | MEDLINE | ID: mdl-15348717

ABSTRACT

Cell adhesion, cell growth and cell activities of macrophages and fibroblasts, cultured on newly developed degradable multiblock-copolyesters were studied to examine the biocompatibility and the possible use of these polymers for medical applications. The biocompatibility and the biodegradability of the polymers were confirmed by subcutaneous implantation of polymer foils in rats. The newly developed polymers, two polyesters (DegraPol/bsc43 and DegraPol/bsd43) and a polyesterether (DegraPol/bst41), were found to exhibit good cell compatibility; the cell-to-substrate interactions induced neither cytotoxic effects nor activation of macrophages. The adhesion and growth of fibroblasts and macrophages were different among the substrate. Fibroblasts adhered on the polyesters to about 60% of control cell cultured on tissue culture polystyrene (TCPS) and proliferated in the same doubling time as on TCPS. On the polyetherester cells exhibited weak adhesion; however, they proliferated up to day 4 after plating at the same doubling time as on TCPS (of about 42 h), and then decreased their doubling time to 27 h. Macrophages attached to the polyesters to about 40-60% of TCPS but no significant change was seen in the doubling time of cells cultured on TCPS and the polyesters. Again on the polyetherester, macrophages exhibited relatively low adhesion (25% of TCPS) and high doubling time (about 100 h). Fibroblasts produced high amounts (up to 500% of control cells) of collagen type I and type IV, and fibronectin. Macrophages responded to lipopolysaccharide treatment by the production of nitric oxide (NO) and tumour necrosis factor-alpha (TNF-alpha), indicating that the cell-to-polymer interactions allow fibroblasts and macrophages to maintain their phenotype. All three test polymers exhibit favourable tissue compatibility. The formed capsule was just a few cell layers thick (<30 microm). After 2 months implanted subcutaneously in rats, the molecular weight of the test polymers was reduced by >20% depending on their chemical structure. Taken collectively, the present data demonstrate that the newly developed multiblock copolyesters are biocompatible and biodegradable.

9.
J Biomed Mater Res ; 36(1): 65-74, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9212390

ABSTRACT

To evaluate the biocompatibility of a newly developed degradable class of polyesterurethanes and their possible use as biomaterials, we investigated the cell and tissue interactions with these polymers using a small number of chemical base entities. The polymers were prepared by chain extension with diisocyanates of PHB/HV-diol and either PCL-diol or Diorez, another aliphatic polyester-diol. Regardless of the chemical composition of the four tested polyesterurethanes used as substrates, no morphological difference was observed either in the macrophages (macrophage cell line J774) or in the fibroblasts (fibroblast cell line 3T3) cultured on the polymers. In contrast, however, cell adhesion and growth of macrophages and fibroblasts were affected by the polymer properties. Compared to macrophages cultured on tissue culture polystyrene (TCPS), cells cultured on the test polymers exhibited levels of cell adhesion that varied from 65-100% of TCPS, and the doubling time was 25-43% higher on the polymers than on TCPS. Likewise, fibroblasts adhered to the polymers at lower rates (50-85% of TCPS) and grew at higher doubling times (125-140% of TCPS). Furthermore, cells cultured on the test polymers preserved their phenotypes: fibroblasts produced high amounts (up to 280% of control cells) of collagens Type I and Type IV and fibronectin; and macrophages produced nitric oxide (NO) and tumor necrosis factor alpha (TNF-alpha) in the same concentrations as control cells and responded to lipopolysaccharide treatment by the elevation of the production of NO and TNF-alpha, indicating that the cell-to-polymer interactions allow fibroblasts and macrophages to maintain their phenotypes. In vivo investigations showed that all four test polymers exhibit favorable tissue compatibility. The formed capsule was 60-250 microns thick. In addition, the polymers are degradable. After one year's subcutaneous implantation in rats, the molecular weight of the test polymers were reduced to about 50%, depending on the composition. Taken collectively, the present data demonstrate that the newly developed polyesterurethanes are cell and tissue compatible and biodegradable.


Subject(s)
Biocompatible Materials , Polyesters , Polyurethanes , 3T3 Cells , Adsorption , Animals , Biocompatible Materials/chemical synthesis , Biodegradation, Environmental , Cell Adhesion , Cell Division , Collagen/metabolism , Fibronectins/metabolism , In Vitro Techniques , Macrophage Activation , Male , Materials Testing , Mice , Microscopy, Electron, Scanning , Polyesters/chemical synthesis , Polyurethanes/chemical synthesis , Prohibitins , Prostheses and Implants , Rats
10.
J Biomed Mater Res ; 32(3): 355-66, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8897140

ABSTRACT

The macrophage cell line J774, primary rat osteoblasts, and the osteoblast cell line MC3T3-E1 were used to examine the biocompatibility of a newly developed polyesterurethane foam and the possible use of this structure as bone-repair materials. The newly developed, biodegradable, and highly porous (pore size 100-150 microns) DegraPol/btc polyesterurethane foam was found to exhibit good cell compatibility; the cell-to-substrate interactions induced neither cytotoxic effects nor activation of macrophages. Osteoblasts and macrophages exhibited normal cell morphology. No signs of cell damage were detected using scanning electron microscopy (SEM). No significant increase in the production of tumor necrosis factor-alpha (TNF-alpha) or nitric oxide (NO) was detected in macrophages. Compared with cells cultured on tissue culture polystyrene (TCPS), macrophages exhibited relatively high cell attachment (150% of TCPS) but significantly high doubling time (about 8 days) compared with TCPS (4.6 days). Primary rat osteoblasts and the osteoblast cell line exhibited relatively high attachment (140% and 180% of TCPS, respectively) and a doubling time of about 5 days, compared with TCPS (6 days and 8.8 days, respectively). Eight days after cell seeding, osteoblasts exhibited a confluent cell multilayer and migrated into the pores of the polymer. In addition they produced high concentrations of collagen type I, the main protein of the bone, and expressed increasing alkaline phosphatase activity and osteocalcin production throughout the 12 days of the experiment. During degradation of these polymers, small crystalline particles of short-chain poly[(R)-3-hydroxybutyric acid] (M(n) approximately 2300) (PHB-P) are released. Therefore PHB-P (diameter, 2-20 microns), as possible degradation products of the polymer, are investigated here for their effects on macrophages and osteoblasts. Results obtained in the present study clearly indicate that macrophages and, to a lesser degree, osteoblasts have the ability to take up (phagocytose) PHB-P. At low concentrations particles of PHB failed to induce cytotoxic effects or to activate macrophages. Osteoblasts showed only limited PHB-P phagocytosis and no signs of cellular damage. At high concentrations of PHB-P, this process was accompanied by cytotoxic effects in macrophages (> 200 pg PHB-P/cell) and to a lesser extent in osteoblasts (> 400 pg PHB-P/cell).


Subject(s)
Bone Substitutes , Macrophages/physiology , Osteoblasts/physiology , Polyesters , Polyurethanes , Animals , Biodegradation, Environmental , Bone Substitutes/chemistry , Bone Substitutes/toxicity , Cell Adhesion , Cell Division , Cell Line , Cell Movement , Collagen/biosynthesis , Macrophages/drug effects , Male , Mice , Microscopy, Electron, Scanning , Nitrites/metabolism , Osteoblasts/drug effects , Osteocalcin/biosynthesis , Phagocytosis , Polyesters/chemistry , Polyesters/toxicity , Polyurethanes/chemistry , Polyurethanes/toxicity , Porosity , Prohibitins , Rats , Rats, Sprague-Dawley , Tumor Cells, Cultured , Tumor Necrosis Factor-alpha/biosynthesis
11.
J Biomed Mater Res ; 30(4): 429-9, 1996 Apr.
Article in English | MEDLINE | ID: mdl-8847351

ABSTRACT

The known biodegradability of poly[(R)-3-hydroxybutyric acid] (PHB) in certain biological environments had led to its proposed use as a biodegradable, biocompatible polymer. Recently, a new, rapidly biodegradable block copolymer that contains crystalline domains of PHB blocks has been synthesized. During degradation of these polymers, the PHB domains are transformed in a first step into small crystalline particles of short-chain PHB. Therefore, particles of short-chain poly[(R)-3-hydroxybutyric acid] (Mn 2300) (PHB-P), as possible degradation products, are investigated here for their effects on the viability and activation of mouse macrophages (J774), primary rat peritoneal macrophages, and mouse fibroblasts (3T3), and their biodegradation or exocytosis (or both) in these cells. Results obtained in the present study indicate that incubation of macrophages with PHB-P concentrations higher than 10 micrograms/mL were found to cause a significant decrease in the number of attached and viable cells as measured in MTT assay, and significant increase in the production levels of tumor necrosis factor-alpha (TNF-alpha) or nitric oxide (NO). At low concentrations, particles of PHB failed to induce cytotoxic effects or to activate macrophages. In addition, signs of possible biodegradation were seen in macrophages. Fibroblasts showed only limited PHB-P phagocytosis and no signs of any cellular damage or cell activation (production of collagen type I and IV, and fibronectin). Taken collectively, the present data indicate that phagocytosis of PHB-P at high concentrations ( > 10 micrograms/mL) is dose dependent and associated with cell damage in macrophages but not in fibroblasts.


Subject(s)
Hydroxybutyrates/toxicity , Macrophages/drug effects , Polyesters/toxicity , 3T3 Cells , Animals , Biotransformation , Cell Death/drug effects , Cell Line , Cell Survival/drug effects , Collagen/pharmacology , Fibroblasts/drug effects , Fibroblasts/metabolism , Fibroblasts/ultrastructure , Fibronectins/pharmacology , Flow Cytometry , Fluorescent Dyes , Macrophage Activation/drug effects , Macrophages/metabolism , Macrophages/ultrastructure , Mice , Microscopy, Electron , Nitrites/chemistry , Phagocytosis/drug effects , Prohibitins , Rats , Tetrazolium Salts , Thiazoles , Tumor Necrosis Factor-alpha/biosynthesis
12.
Int J Pept Protein Res ; 29(6): 734-8, 1987 Jun.
Article in English | MEDLINE | ID: mdl-3305397

ABSTRACT

Classical methods of peptide synthesis in solution were used for the preparation of the two tetrapeptides alanyl-lysyl-arginyl-tyrosine and acetyl-alanyl-lysyl-arginyl-tyrosine-(N-methylamide). The two compounds were able to be recognized as substrates by proenkephalin processing enzymes and were used for the development of a quantitative assay for these enzymes. The first substrate proved to be convenient, although it was also partially degraded by amino- and carboxypeptidases under the conditions of the assay. The second was found to be hydrolyzed by the endopeptidases at too slow a rate to allow its routine use in the assay.


Subject(s)
Enkephalins/genetics , Oligopeptides/chemical synthesis , Peptide Hydrolases/metabolism , Protein Precursors/genetics , Adrenal Medulla/enzymology , Animals , Cattle , Chromaffin Granules/enzymology , Indicators and Reagents , Protein Processing, Post-Translational , Substrate Specificity
13.
Acta Biotheor ; 36(2): 51-60, 1987.
Article in English | MEDLINE | ID: mdl-3122477

ABSTRACT

The universally valid genetic code is the final result of a multi-stage course of development. Degeneracy, as an important property of the genetic code, was possibly not yet present in the earliest code, first appearing at a later stage of development (Code III). Possibly this step in development is coupled with the presence of a total of four amino acid groups (L, I, E, F). Each group contains a specific number of amino acid (AL, AI, AE, AF). Amino acid groups: - (L) hydrophobic - (I) weakly hydrophobic or polar but uncharged - (E) hydrophilic, acidic - (F) hydrophilic, basic - (D) hydrophobic, aromatic (only in Code IV and Code M. This group is not considered in the calculations below.) In a subsequent stage of development the number of amino acids increases further. At the same time the code becomes more degenerate. The universal genetic code is characterized by three constants of being degenerate. Its immediate predecessor has linear degeneration with two constants. The mitochondrial code represents a transitional form between these two codes.


Subject(s)
Genetic Code , Models, Genetic , Amino Acid Sequence , Base Sequence , Humans
14.
Acta Biotheor ; 35(1-2): 3-14, 1986.
Article in English | MEDLINE | ID: mdl-3082089

ABSTRACT

The laws governing degeneration of the genetic code are discussed below. Of fundamental importance in this context is the classification of the amino acids into groups on the basis of the physicochemical behaviour of their residues. From this, it is possible to formulate arithmetic relationships between the number of amino acids in the same group and the number of coding triplets. It is found that the degeneration of the genetic code obeys certain laws, the reasons for this being related to the number and the qualitative properties of the amino acids and triplets. The fact that the three bases of a coding triplet have different priorities must also be a critical factor.


Subject(s)
Genetic Code , Models, Genetic , Amino Acid Sequence , Anticodon , Base Sequence , Codon , Mathematics
15.
Biophys J ; 47(3): 327-35, 1985 Mar.
Article in English | MEDLINE | ID: mdl-2579687

ABSTRACT

Using Urry's gramicidin A (GA) atomic coordinates and ab into calculations, the interaction energies of a K+ ion with GA are examined. From these energies the values of the fitting parameters are obtained for 6-12-1 atom-atom pair potentials. The potential of the GA channel as experienced by the ion is analyzed in detail. An energy profile of the K+ ion in the GA channel is obtained by analyzing iso-energy maps. Using Monte Carlo simulations, the energy profiles of the K+ ion with the solvated GA channel are analyzed and the hydration structures in the presence of the K+ ion are studied.


Subject(s)
Gramicidin , Ion Channels/physiology , Potassium , Liposomes , Mathematics , Membrane Lipids/physiology , Models, Biological , Models, Molecular , Protein Conformation , Solvents
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