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1.
Genomics ; 85(5): 582-90, 2005 May.
Article in English | MEDLINE | ID: mdl-15820310

ABSTRACT

The human ortholog of the gene responsible for audiogenic seizure susceptibility in Frings and BUB/BnJ mice (mouse gene symbol Mass1) recently was shown to underlie Usher syndrome type IIC (USH2C). Here we report that the Mass1frings mutation is responsible for the early onset hearing impairment of BUB/BnJ mice. We found highly significant linkage of Mass1 with ABR threshold variation among mice from two backcrosses involving BUB/BnJ mice with mice of strains CAST/EiJ and MOLD/RkJ. We also show an additive effect of the Cdh23 locus in modulating the progression of hearing loss in backcross mice. Together, these two loci account for more than 70% of the total ABR threshold variation among the backcross mice at all ages. The modifying effect of the strain-specific Cdh23ahl variant may account for the hearing and audiogenic seizure differences observed between Frings and BUB/BnJ mice, which share the Mass1frings mutation. During postnatal cochlear development in BUB/BnJ mice, stereocilia bundles develop abnormally and remain immature and splayed into adulthood, corresponding with the early onset hearing impairment associated with Mass1frings. Progressive base-apex hair cell degeneration occurs at older ages, corresponding with the age-related hearing loss associated with Cdh23ahl. The molecular basis and pathophysiology of hearing loss suggest BUB/BnJ and Frings mice as models to study cellular and molecular mechanisms underlying USH2C auditory pathology.


Subject(s)
Cochlea/ultrastructure , Disease Models, Animal , Hearing Loss/genetics , Hearing Loss/pathology , Mutation/genetics , Receptors, G-Protein-Coupled/genetics , Animals , Crosses, Genetic , DNA Primers , Electrophoresis, Agar Gel , Evoked Potentials, Auditory, Brain Stem , Mice , Mice, Mutant Strains , Microsatellite Repeats/genetics , Microscopy, Electron, Scanning
2.
Br J Surg ; 91(7): 828-41, 2004 Jul.
Article in English | MEDLINE | ID: mdl-15227688

ABSTRACT

BACKGROUND: The ideal perioperative analgesia should provide effective pain relief, avoid the detrimental effects of the stress response, be simple to administer without the need for intensive monitoring, and have a low risk of complications. METHODS: This review defines the physiological effects of epidural analgesia and assesses whether the available evidence supports its preferential use in gastrointestinal surgery. All papers studied were identified from a Medline search or selected by cross-referencing. RESULTS: Epidural analgesia is associated with a shorter duration of postoperative ileus, attenuation of the stress response, fewer pulmonary complications, and improved postoperative pain control and recovery. It does not reduce anastomotic leakage, intraoperative blood loss, transfusion requirement, risk of thromboembolism or cardiac morbidity, or hospital stay compared with that after conventional analgesia in unselected patients undergoing gastrointestinal surgery. Thoracic epidural analgesia reduces hospital costs and stay in patients at high risk of cardiac or pulmonary complications. CONCLUSIONS: Epidural analgesia enhances recovery after gastrointestinal surgery. The results support the development of structured regimens of early postoperative feeding and mobilization to exploit the potential for thoracic epidural analgesia to reduce hospital stay after gastrointestinal surgery.


Subject(s)
Analgesia, Epidural/methods , Gastrointestinal Diseases/surgery , Analgesia, Epidural/adverse effects , Anastomosis, Surgical , Anesthetics, Local/therapeutic use , Blood Coagulation Disorders/etiology , Blood Loss, Surgical , Gastrointestinal Diseases/physiopathology , Heart Diseases/etiology , Heart Diseases/physiopathology , Humans , Ileus/etiology , Length of Stay , Lung Diseases/etiology , Lung Diseases/physiopathology , Narcotics/therapeutic use , Pain, Postoperative/etiology , Postoperative Complications/etiology , Postoperative Complications/physiopathology , Surgical Wound Dehiscence/etiology
3.
Am J Hum Genet ; 71(2): 262-75, 2002 Aug.
Article in English | MEDLINE | ID: mdl-12075507

ABSTRACT

Usher syndrome type I is characterized by congenital hearing loss, retinitis pigmentosa (RP), and variable vestibular areflexia. Usher syndrome type ID, one of seven Usher syndrome type I genetic localizations, have been mapped to a chromosomal interval that overlaps with a nonsyndromic-deafness localization, DFNB12. Mutations in CDH23, a gene that encodes a putative cell-adhesion protein with multiple cadherin-like domains, are responsible for both Usher syndrome and DFNB12 nonsyndromic deafness. Specific CDH23 mutational defects have been identified that differentiate these two phenotypes. Only missense mutations of CDH23 have been observed in families with nonsyndromic deafness, whereas nonsense, frameshift, splice-site, and missense mutations have been identified in families with Usher syndrome. In the present study, a panel of 69 probands with Usher syndrome and 38 probands with recessive nonsyndromic deafness were screened for the presence of mutations in the entire coding region of CDH23, by heteroduplex, single-strand conformation polymorphism, and direct sequence analyses. A total of 36 different CDH23 mutations were detected in 45 families; 33 of these mutations were novel, including 18 missense, 3 nonsense, 5 splicing defects, 5 microdeletions, and 2 insertions. A total of seven mutations were common to more than one family. Numerous exonic and intronic polymorphisms also were detected. Results of ophthalmologic examinations of the patients with nonsyndromic deafness have found asymptomatic RP-like manifestations, indicating that missense mutations may have a subtle effect in the retina. Furthermore, patients with mutations in CDH23 display a wide range of hearing loss and RP phenotypes, differing in severity, age at onset, type, and the presence or absence of vestibular areflexia.


Subject(s)
Cadherins/genetics , Deafness/genetics , Mutation , Retinitis Pigmentosa/genetics , Adolescent , Adult , Aged , Amino Acid Sequence , Cadherin Related Proteins , Child , Child, Preschool , DNA Mutational Analysis , Female , Genetic Heterogeneity , Humans , Infant , Male , Molecular Sequence Data , Phenotype , Sequence Alignment , Syndrome , Vestibular Function Tests
4.
Br J Surg ; 89(3): 303-10, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11872054

ABSTRACT

BACKGROUND: The aim was to determine the safety and feasibility of percutaneous cryotherapy for treating irresectable colorectal liver metastases. METHODS: Liquid nitrogen cryoprobes were inserted percutaneously into metastases using the Seldinger technique under computed tomographic guidance. Single-probe treatments were performed with either 3.6- or 6.3-mm cryoprobes (ice-ball volumes 18 and 59 cm3 respectively), or dual-probe treatments with two adjacent 6.3-mm probes (ice-ball volume 205 cm3). Treatment involved a single freeze--thaw cycle. RESULTS: Fifteen patients received 25 single-probe treatments and seven patients received 14 dual-probe treatments. The treatment-related mortality rate was zero and complications occurred after six of 39 treatments. Liver metastasis growth was significantly delayed for 2 months after dual-probe but not single-probe treatment. Metastasis cryotherapy stimulated an immediate rise, followed by a fall, in serum carcinoembryonic antigen (CEA) level, associated with immune upregulation that was significantly greater after dual-probe treatments. CONCLUSION: Ablation zones that were approximately four times larger than those produced by previously described percutaneous techniques delayed the growth of metastases, reduced serum CEA concentration, and induced detectable inflammatory and T-lymphocyte responses. Percutaneous cryotherapy for treatment of colorectal liver metastases is feasible and may have a place in conjunction with chemotherapy.


Subject(s)
Colorectal Neoplasms , Cryosurgery/methods , Liver Neoplasms/surgery , Aged , Carcinoembryonic Antigen/blood , Cryosurgery/adverse effects , Feasibility Studies , Humans , Leukocyte Count , Liver Function Tests , Liver Neoplasms/blood , Liver Neoplasms/secondary , Middle Aged , Platelet Count , Postoperative Complications/etiology , Tomography, X-Ray Computed/methods , Treatment Outcome
5.
Am J Hum Genet ; 69(1): 228-34, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11402400

ABSTRACT

Usher syndrome type IIa is an autosomal recessive disorder characterized by mild-to-severe hearing loss and progressive visual loss due to retinitis pigmentosa. The mutation that most commonly causes Usher syndrome type IIa is a 1-bp deletion, described as "2299delG," in the USH2A gene. The mutation has been identified in several patients from northern and southern Europe and from North America, and it has been found in single patients from South America, South Africa, and China. Various studies have reported a range of frequencies (.16-.44) among patients with Usher syndrome, depending on the geographic origin of the patients. The 2299delG mutation may be the one that most frequently causes retinitis pigmentosa in humans. Given the high frequencies and the wide geographic distribution of the mutation, it was of interest to determine whether the mutation resulted from an ancestral mutational event or represented a mutational hotspot in the USH2A gene. Haplotype analysis was performed on DNA samples from 116 unrelated patients with Usher syndrome type IIa; the patients were from 14 countries and represented 148 2299delG alleles. On the basis of six single-nucleotide polymorphisms within the USH2A gene, 12 core haplotypes were observed in a panel of normal chromosomes. However, in our analysis, only one core haplotype was found to be associated with the 2299delG mutation. The data indicate that the widespread geographic distribution of the 2299delG mutation is the result of an ancestral mutation that has spread throughout Europe and into the New World as a result of migration.


Subject(s)
Deafness/genetics , Extracellular Matrix Proteins/genetics , Founder Effect , Gene Frequency/genetics , Retinitis Pigmentosa/genetics , Sequence Deletion/genetics , Alleles , Evolution, Molecular , Genetic Testing , Genotype , Geography , Haplotypes/genetics , Humans , Microsatellite Repeats/genetics , Mutagenesis/genetics , Polymorphism, Single Nucleotide/genetics , Syndrome
6.
Exp Eye Res ; 72(5): 503-9, 2001 May.
Article in English | MEDLINE | ID: mdl-11311042

ABSTRACT

Usher syndrome (USH) is a combination of a progressive pigmentary retinopathy, indistinguishable from retinitis pigmentosa, and some degree of sensorineural hearing loss. USH can be subdivided in Usher type I (USHI), type II (USHII) and type III (USHIII), all of which are inherited as autosomal recessive traits. The three subtypes are genetically heterogeneous, with six loci so far identified for USHI, three for USHII and only one for USHIII. Mutations in a novel gene, USH2A, encoding the protein usherin, have recently been shown to be associated with USHII. The gene encodes a protein with partial sequence homology to both laminin epidermal growth factor and fibronectin motifs. We analysed 35 British and one Pakistani Usher type II families with at least one affected member, for sequence changes in the 20 translated exons of the USH2A gene, using heteroduplex analysis and sequencing. Probable disease-causing mutations in USH2A were identified in 15 of 36 (41.7%) Usher II families. The most frequently encountered mutation (11/15 families or 11/18 mutated alleles) was del2299G in exon 13, resulting in a frameshift and premature stop codon. Other mutations include insertions and point mutations, of which two are previously unreported. Five different polymorphisms were also detected. Our results indicate that mutations in this gene are responsible for disease in a large proportion of British Usher type II patients. Moreover, if screening for mutations in USH2A is considered, it is sensible to screen for the del2299G mutation first.


Subject(s)
Hearing Loss, Sensorineural/genetics , Mutation/genetics , Retinitis Pigmentosa/genetics , Chromosome Deletion , Female , Frameshift Mutation/genetics , Genes, Recessive , Genetic Linkage/genetics , Heteroduplex Analysis , Humans , Male , Pedigree , Point Mutation/genetics , Polymorphism, Genetic , Syndrome
7.
Am J Hum Genet ; 67(6): 1569-74, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11060213

ABSTRACT

Usher syndrome type I is an autosomal recessive disorder marked by hearing loss, vestibular areflexia, and retinitis pigmentosa. Six Usher I genetic subtypes at loci USH1A-USH1F have been reported. The MYO7A gene is responsible for USH1B, the most common subtype. In our analysis, 151 families with Usher I were screened by linkage and mutation analysis. MYO7A mutations were identified in 64 families with Usher I. Of the remaining 87 families, who were negative for MYO7A mutations, 54 were informative for linkage analysis and were screened with the remaining USH1 loci markers. Results of linkage and heterogeneity analyses showed no evidence of Usher types Ia or Ie. However, one maximum LOD score was observed lying within the USH1D region. Two lesser peak LOD scores were observed outside and between the putative regions for USH1D and USH1F, on chromosome 10. A HOMOG chi(2)((1)) plot shows evidence of heterogeneity across the USH1D, USH1F, and intervening regions. These results provide conclusive evidence that the second-most-common subtype of Usher I is due to genes on chromosome 10, and they confirm the existence of one Usher I gene in the previously defined USH1D region, as well as providing evidence for a second, and possibly a third, gene in the 10p/q region.


Subject(s)
Abnormalities, Multiple/genetics , Chromosomes, Human, Pair 10/genetics , Deafness/genetics , Genetic Heterogeneity , Retinitis Pigmentosa/genetics , Chromosome Mapping , Consanguinity , DNA Mutational Analysis , Genes, Recessive/genetics , Humans , Lod Score , Mutation/genetics , Syndrome
8.
Eur J Hum Genet ; 8(7): 500-6, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10909849

ABSTRACT

Usher syndrome type II is an autosomal recessive disorder, characterised by stable hearing impairment from childhood and progressive retinitis pigmentosa from the late teens. Mutations in the USH2A gene, located on 1q41, were recently shown to be responsible for Usher syndrome type IIa. We have investigated the molecular pathology of Usher type II by screening the USH2A gene for mutations in 31 unrelated patients from Denmark and Norway. Besides the frequent 2299delG mutation, which accounted for 44% of the disease alleles, a heterogeneous spectrum of mutations was identified. Sixteen new, putative disease-causing mutations were detected, of which 12 were private and four were shared by unrelated patients. The disease-causing mutations were scattered throughout the gene and included six nonsense and seven missense mutations, two deletions and one small insertion. In addition, six non-pathogenic polymorphisms were identified. All missense mutations resulted in major amino acid side-chain alterations. Four missense mutations affected the N-terminal part of USH2A, whereas three missense mutations affected the laminin-type epidermal growth factor-like (LE) domain. The structural consequences of the mutations affecting the LE domain are discussed in relation to the three-dimensional structure of a LE-module of the mouse laminin gamma1 chain.


Subject(s)
Deafness/genetics , Extracellular Matrix Proteins/genetics , Retinitis Pigmentosa/genetics , Adolescent , Adult , Amino Acid Sequence , Child , Child, Preschool , DNA Mutational Analysis , DNA Primers/chemistry , Extracellular Matrix Proteins/chemistry , Genetic Variation , Humans , Laminin/chemistry , Laminin/metabolism , Models, Molecular , Models, Structural , Molecular Sequence Data , Mutation, Missense , Protein Conformation , Sequence Homology, Amino Acid , Syndrome
9.
Hum Mutat ; 15(4): 388, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10738000

ABSTRACT

The Usher syndromes are autosomal recessive hereditary disorders characterized by hearing impairment and progressive visual loss due to Retinitis Pigmentosa (RP). Moderate to severe sensorineural hearing loss and progressive RP characterizes Usher syndrome type IIa (USH2A), which maps to the long arm of chromosome 1q41. Recently, three deletions carried by USH2 patients, which were found in a novel gene isolated from the critical 1q41 region, defined this gene as responsible for USH2A. The USH2A gene is predicted to encode a 1546 amino acid protein which possesses domains that are observed in basal lamina and extracellular matrix proteins and in cell adhesion molecules. Affected individuals and additional members from eleven USH2 Israeli families of diverse ethnic origin were screened for the presence of changes in all 20 coding exons of the USH2A gene. Three novel mutations (239-242insCGTA, R334W, T1515M) were identified in three families of Jewish Moroccan and Jewish Iranian origins. Twelve polymorphisms were found in the families, four of which are novel. None of the known USH2 mutations were identified in the families studied in this work. Hum Mutat 15:388, 2000.


Subject(s)
Extracellular Matrix Proteins/genetics , Mutation/genetics , Polymorphism, Genetic/genetics , Adolescent , Adult , Child, Preschool , Consanguinity , Deafness/genetics , Female , Humans , Israel/epidemiology , Loss of Heterozygosity , Male , Middle Aged , Retinitis Pigmentosa/genetics , Syndrome
10.
Am J Hum Genet ; 66(4): 1199-210, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10729113

ABSTRACT

Usher syndrome type IIa (USHIIa) is an autosomal recessive disorder characterized by moderate to severe sensorineural hearing loss and progressive retinitis pigmentosa. This disorder maps to human chromosome 1q41. Recently, mutations in USHIIa patients were identified in a novel gene isolated from this chromosomal region. The USH2A gene encodes a protein with a predicted molecular weight of 171.5 kD and possesses laminin epidermal growth factor as well as fibronectin type III domains. These domains are observed in other protein components of the basal lamina and extracellular matrixes; they may also be observed in cell-adhesion molecules. The intron/exon organization of the gene whose protein we name "Usherin" was determined by direct sequencing of PCR products and cloned genomic DNA with cDNA-specific primers. The gene is encoded by 21 exons and spans a minimum of 105 kb. A mutation search of 57 independent USHIIa probands was performed with a combination of direct sequencing and heteroduplex analysis of PCR-amplified exons. Fifteen new mutations were found. Of 114 independent USH2A alleles, 58 harbored probable pathologic mutations. Ten cases of USHIIa were true homozygotes and 10 were compound heterozygotes; 18 heterozygotes with only one identifiable mutation were observed. Sixty-five percent (38/58) of cases had at least one mutation, and 51% (58/114) of the total number of possible mutations were identified. The allele 2299delG (previously reported as 2314delG) was the most frequent mutant allele observed (16%; 31/192). Three new missense mutations (C319Y, N346H, and C419F) were discovered; all were restricted to the previously unreported laminin domain VI region of Usherin. The possible significance of this domain, known to be necessary for laminin network assembly, is discussed in the context of domain VI mutations from other proteins.


Subject(s)
Exons/genetics , Extracellular Matrix Proteins/genetics , Hearing Loss, Sensorineural/genetics , Introns/genetics , Mutation/genetics , Retinitis Pigmentosa/genetics , Amino Acid Sequence , Base Sequence , Child , Codon, Terminator/genetics , DNA Mutational Analysis , Female , Frameshift Mutation/genetics , Genotype , Heteroduplex Analysis , Humans , Linkage Disequilibrium/genetics , Male , Molecular Sequence Data , Mutation, Missense/genetics , RNA Splicing/genetics , Sequence Alignment , Syndrome
11.
Hum Mutat ; 15(1): 114-5, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10612833

ABSTRACT

Usher syndromeIb (USH1B), an autosomal recessive disorder caused by mutations in myosin VIIa (MYO7A), is characterized by congenital profound hearing loss, vestibular abnormalities and retinitis pigmentosa. Promoter elements in the 5 kb upstream of the translation start were identified using adult retinal pigment epithelium cells (ARPE-19) as a model system. A 160 bp minimal promoter within the first intron was active in ARPE-19 cells, but not in HeLa cells that do not express MYO7A. A 100 bp sequence, 5' of the first exon, and repeated with 90% homology within the first intron, appeared to modulate expression in both cell lines. Segments containing these elements were screened by heteroduplex analysis. No heteroduplexes were detected in the minimal promoter, suggesting that this sequence is conserved. A -2568 A>T transversion in the 5' 100 bp repeat, eliminating a CCAAT element, was found only in USH1B patients. However, in all 5 families, -2568 A>T was in cis with the same missense mutation in the myosin VIIa tail (Arg1240Gln), and 4 of the 5 families were Dutch. These observations suggest either 1) linkage disequilibrium or 2)that a combination of a promoter mutation with a less active myosin VIIa protein results in USH1B.


Subject(s)
Gene Expression Regulation , Hearing Loss, Sensorineural/genetics , Myosins/genetics , Promoter Regions, Genetic , Retinitis Pigmentosa/genetics , Vestibular Diseases/genetics , Amino Acid Substitution , Cell Line , Dyneins , HeLa Cells , Hearing Loss, Sensorineural/metabolism , Humans , Linkage Disequilibrium , Mutation, Missense , Myosin VIIa , Myosins/biosynthesis , Pedigree , Pigment Epithelium of Eye/metabolism , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , Retinitis Pigmentosa/metabolism , Syndrome , Vestibular Diseases/metabolism
12.
Hum Mutat ; 14(4): 354, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10502787

ABSTRACT

Usher syndromeIb (USH1B), an autosomal recessive disorder caused by mutations in myosin VIIa (MYO7A), is characterized by congenital profound hearing loss, vestibular abnormalities and retinitis pigmentosa. Promoter elements in the 5 kb upstream of the translation start were identified using adult retinal pigment epithelium cells (ARPE-19) as a model system. A 160 bp minimal promoter within the first intron was active in ARPE-19 cells, but not in HeLa cells that do not express MYO7A. A 100 bp sequence, 5' of the first exon, and repeated with 90% homology within the first intron, appeared to modulate expression in both cell lines. Segments containing these elements were screened by heteroduplex analysis. No heteroduplexes were detected in the minimal promoter, suggesting that this sequence is conserved. A -2568 A>T transversion in the 5' 100 bp repeat, eliminating a CCAAT element, was found only in USH1B patients. However, in all 5 families, -2568 A>T was in cis with the same missense mutation in the myosin VIIa tail (Arg1240Gln), and 4 of the 5 families were Dutch. These observations suggest either 1) linkage disequilibrium or 2)that a combination of a promoter mutation with a less active myosin VIIa protein results in USH1B.


Subject(s)
Gene Expression Regulation , Hearing Loss, Sensorineural/genetics , Myosins/biosynthesis , Myosins/genetics , Retinitis Pigmentosa/genetics , Vestibular Diseases/genetics , Cells, Cultured , Chromosomes, Human, Pair 11 , DNA Mutational Analysis , Dyneins , HeLa Cells , Hearing Loss, Sensorineural/metabolism , Humans , Mutation, Missense , Myosin VIIa , Pigment Epithelium of Eye/metabolism , Promoter Regions, Genetic , Retinitis Pigmentosa/metabolism , Syndrome , Vestibular Diseases/metabolism
13.
Hum Genet ; 104(2): 188-92, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10190331

ABSTRACT

Enlarged vestibular aqueduct (EVA), known as the most common form of inner ear abnormality, has recently been of particular genetic interest because this anomaly is inherited in a recessive manner. The locus for non-syndromic sensorineural hearing loss with EVA has been mapped to the same chromosomal region, 7q31, as the Pendred syndrome locus. In the present study, seven mutations in the PDS gene (PDS), the gene responsible for Pendred syndrome, have been found in families of non-syndromic sensorineural hearing loss with EVA. One family is homozygous, three families are compound heterozygotes, and two families are heterozygous but with no other mutation detected. The present results provide evidence that mutations in PDS cause both syndromic and non-syndromic hearing loss.


Subject(s)
Carrier Proteins/genetics , Hearing Loss, Sensorineural/genetics , Membrane Transport Proteins , Female , Frameshift Mutation , Genes, Recessive , Humans , Male , Mutation, Missense , Pedigree , Sulfate Transporters , Syndrome , Vestibular Aqueduct
15.
Science ; 280(5370): 1753-7, 1998 Jun 12.
Article in English | MEDLINE | ID: mdl-9624053

ABSTRACT

Usher syndrome type IIa (OMIM 276901), an autosomal recessive disorder characterized by moderate to severe sensorineural hearing loss and progressive retinitis pigmentosa, maps to the long arm of human chromosome 1q41 between markers AFM268ZD1 and AFM144XF2. Three biologically important mutations in Usher syndrome type IIa patients were identified in a gene (USH2A) isolated from this critical region. The USH2A gene encodes a protein with a predicted size of 171.5 kilodaltons that has laminin epidermal growth factor and fibronectin type III motifs; these motifs are most commonly observed in proteins comprising components of the basal lamina and extracellular matrixes and in cell adhesion molecules.


Subject(s)
Extracellular Matrix Proteins/genetics , Hearing Loss, Sensorineural/genetics , Retinitis Pigmentosa/genetics , Amino Acid Sequence , Animals , Cell Adhesion Molecules/chemistry , Chromosome Mapping , Chromosomes, Human, Pair 1 , Cochlea/chemistry , Epidermal Growth Factor/chemistry , Extracellular Matrix Proteins/chemistry , Extracellular Matrix Proteins/physiology , Female , Fibronectins/chemistry , Frameshift Mutation , Gene Expression , Genes, Recessive , Glycosylation , Humans , Laminin/chemistry , Male , Molecular Sequence Data , Pedigree , Retina/chemistry , Syndrome , Tumor Cells, Cultured
16.
Hum Mutat ; 11(6): 443-9, 1998.
Article in English | MEDLINE | ID: mdl-9603436

ABSTRACT

The Branchio-oto-renal (BOR) syndrome is an autosomal dominant disorder characterized by branchial clefts, preauricular sinuses, hearing loss, and renal anomalies. Recent studies have shown that mutations in EYA1 are associated with BOR. However, the underlying molecular mechanisms by which mutations in the EYA1 gene cause BOR syndrome are unknown. We have investigated 12 unrelated Caucasian families for mutations by heteroduplex analysis and direct sequencing of products from the polymerase chain reaction. In this study, we identified two novel frameshift deletions and a single base substitution that introduces a stop codon mutation in the C-terminal region of the EYA1 gene. No obvious relationships were observed between the nature of the mutations and the variable clinical features associated with BOR syndrome.


Subject(s)
Branchio-Oto-Renal Syndrome/genetics , Mutation , Trans-Activators/genetics , Amino Acid Sequence , Base Sequence , DNA Primers , Exons , Female , Humans , Intracellular Signaling Peptides and Proteins , Male , Molecular Sequence Data , Nuclear Proteins , Pedigree , Protein Tyrosine Phosphatases
17.
Eur J Hum Genet ; 6(6): 563-9, 1998.
Article in English | MEDLINE | ID: mdl-9887373

ABSTRACT

Thirteen Japanese families (ten of which were from the northern part of Japan), with sensorineural hearing loss associated with the 1555 A to G (A1555G) mitochondrial mutation, a known cause of non-syndromic hearing loss, were phylogenetically analysed using data obtained by restriction fragment length polymorphism (RFLP) and D-loop sequencing of mitochondrial DNA (mtDNA). Various types of mtDNA polymorphism were detected by restriction enzymes and D-loop sequence. No common polymorphic pattern throughout the 13 families was found, though three families exhibited the same restriction patterns and the same sequence substitution in the D-loop. To find where each of the 13 families are situated in the phylogenetic tree, the 482-bp of D-loop sequence were compared with those of 62 normal Japanese subjects. Despite the three families mentioned above appearing to be clustered, the remaining 10 families were scattered along the phylogenetic tree. This indicates that there was no common ancestor for the 13 Japanese families bearing the A1555G mutation except three families, and that the A1555G mutation occurred sporadically and multiplied through evolution of the mtDNA in Japan. The present results showed that the common pathogenicity (hearing loss associated with the A1555G mutation) can occur sporadically in families which have different genetic backgrounds, even in the Japanese population.


Subject(s)
DNA, Mitochondrial/genetics , Hearing Loss, Sensorineural/genetics , Mutation , Phylogeny , Hearing Loss, Sensorineural/ethnology , Humans , Japan , Pedigree , Polymorphism, Restriction Fragment Length
18.
Genomics ; 43(1): 104-6, 1997 Jul 01.
Article in English | MEDLINE | ID: mdl-9226380

ABSTRACT

Usher syndrome type 1 (USH1) is an autosomal recessive, genetically heterogeneous disorder causing severe congenital deafness, retinitis pigmentosa, and vestibular dysfunction. The USHla locus located on 14q32 has been linked to the genetic markers D14S250 and D14S78. Using D14S250 and D14S78, we have isolated two nonchimeric YACs, 878g10 and 844g2, and a single BAC (135i20) and PAC (194e17) clone and have arranged them into a contig spanning over the D14S250 and D14S78 markers. The analysis of the YACs, BAC, and PAC revealed that the physical distance between D14S250 and D14S78 is less than 25 kb. Iterative cDNA library screening initiated with the EST 219670 found in the vicinity of the D14S78 marker yielded a cDNA contig. The nucleotide sequence of the cDNA encodes a protein of 717 amino acids in length, showing a high level of homology to the Echinoderm 77-kDa microtubule-associated protein (EMAP). The human homologue of Echinoderm microtubule-associated protein defines a novel human gene. We propose that the human EMAP is a strong candidate for the USH1a gene based on its genomic location and the proposed function of the protein.


Subject(s)
Chromosomes, Human, Pair 14/genetics , Deafness/genetics , Echinodermata/genetics , Microtubule-Associated Proteins/genetics , Animals , Base Sequence , Chromosome Mapping , DNA, Complementary/genetics , Deafness/congenital , Genetic Linkage , Genetic Markers , Humans , Molecular Sequence Data , Retinitis Pigmentosa/genetics , Sequence Tagged Sites , Species Specificity , Syndrome , Vestibular Diseases/genetics
19.
Genomics ; 40(1): 73-9, 1997 Feb 15.
Article in English | MEDLINE | ID: mdl-9070921

ABSTRACT

Usher syndrome type Ib is a recessive autosomal disorder manifested by congenital deafness, vestibular dysfunction, and progressive retinal degeneration. Mutations in the human myosin VIIa gene (MYO7A) have been reported to cause Usher type Ib. Here we report the genomic organization of MYO7A. An STS content map was determined to discover the YAC clones that would cover the critical region for Usher syndrome type Ib. Three of the YACs (802A5, 966D6, and 965F10) were subcloned into cosmids and used to assemble a preliminary cosmid contig of the critical region. Part of the gene encoding human myosin VIIa was found in the preliminary cosmid contig. A cosmid, P1, PAC, and long PCR contig that contained the entire MYO7A gene was assembled. Primers were designed from the composite cDNA sequence and used to detect intron-exon junctions by directly sequencing cosmid, P1, PAC, and genomic PCR DNA. Alternatively spliced products were transcribed from the MYO7A gene: the largest transcript (7.4 kb) contains 49 exons. The MYO7A gene is relatively large, spanning approximately 120 kb of genomic DNA on chromosome 11q13.


Subject(s)
Abnormalities, Multiple/genetics , Myosins/genetics , Chromosomes, Artificial, Yeast , Cosmids , Dyneins , Exons , Hearing Loss, Sensorineural/genetics , Humans , Introns , Myosin VIIa , Polymerase Chain Reaction , Retinal Degeneration/genetics , Sequence Tagged Sites , Syndrome , Vestibular Diseases/genetics
20.
Am J Hum Genet ; 59(5): 1074-83, 1996 Nov.
Article in English | MEDLINE | ID: mdl-8900236

ABSTRACT

Usher syndrome type 1b (USH1B) is an autosomal recessive disorder characterized by congenital profound hearing loss, vestibular abnormalities, and retinitis pigmentosa. The disorder has recently been shown to be caused by mutations in the myosin VIIa gene (MYO7A) located on 11q14. In the current study, a panel of 189 genetically independent Usher I cases were screened for the presence of mutations in the N-terminal coding portion of the motor domain of MYO7A by heteroduplex analysis of 14 exons. Twenty-three mutations were found segregating with the disease in 20 families. Of the 23 mutations, 13 were unique, and 2 of the 13 unique mutations (Arg212His and Arg212Cys) accounted for the greatest percentage of observed mutant alleles (8/23, 31%). Six of the 13 mutations caused premature stop codons, 6 caused changes in the amino acid sequence of the myosin VIIa protein, and 1 resulted in a splicing defect. Three patients were homozygotes or compound heterozygotes for mutant alleles; these three cases were Tyr333Stop/Tyr333Stop, Arg212His-Arg302His/Arg212His-Arg302His, and IVS13nt-8c-->g/Glu450Gln. All the other USH1B mutations observed were simple heterozygotes, and it is presumed that the mutation on the other allele is present in the unscreened regions of the gene. None of the mutations reported here were observed in 96 unrelated control samples, although several polymorphisms were detected. These results add three patients to single case reported previously where mutations have been found in both alleles and raises the total number of unique mutations in MYO7A to 16.


Subject(s)
Chromosomes, Human, Pair 11 , Hearing Loss, Sensorineural/genetics , Myosins/genetics , Retinitis Pigmentosa/genetics , Alleles , Dyneins , Exons/genetics , Female , Hearing Loss, Sensorineural/complications , Humans , Male , Mutation , Myosin VIIa , Retinitis Pigmentosa/complications , Syndrome
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