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1.
J Agric Food Chem ; 72(13): 7291-7298, 2024 Apr 03.
Article in English | MEDLINE | ID: mdl-38507714

ABSTRACT

Bacillus thuringiensis (Bt) is widely used to produce biological pesticides. However, its persistence is limited because of ultraviolet (UV) rays. In our previous study, we found that exogenous intermediates of the urea cycle were beneficial to Bt for survival under UV stress. To further explore the effect of the urea cycle on the resistance mechanism of Bt, the rocF/argG gene, encoding arginase and argininosuccinate synthase, respectively, were knocked out and recovered in this study. After the target genes were removed, respectively, the urea cycle in the tested Bt was inhibited to varying degrees. The UV stress test showed that the urea cycle disorder could reduce the resistance of Bt under UV stress. Meanwhile, the antioxidant enzyme activities of Bt were also decreased to varying degrees due to the knockout of the target genes. All of these results revealed that the urea cycle can metabolically regulate the stress resistance of Bt.


Subject(s)
Bacillus thuringiensis , Bacillus thuringiensis/genetics , Urea , Bacterial Proteins/genetics , Bacterial Proteins/pharmacology , Endotoxins/pharmacology
2.
J Hazard Mater ; 465: 133115, 2024 Mar 05.
Article in English | MEDLINE | ID: mdl-38096614

ABSTRACT

Microplastic pollution in freshwater environments has received increasing attention. However, limited research on the occurrence and distribution of microplastics in plateau lakes. This study investigated the microplastic characteristics and influencing factors in lakes with different land cover types on the Inner Mongolia Plateau. Results showed that microplastic abundance ranged from 0.5 to 12.6 items/L in water and 50-325 items/kg in sediments. Microplastics in water were predominantly polypropylene (50.5%), fragments (40.5%), and 50-200 µm (66.7%). High-density (27.9%), fibrous (69.3%), and large-sized microplastics (47.7%) were retained primarily in lake sediments. The highest microplastic abundance in water was found in cropland lakes and grassland lakes, while that in sediments was in descending order of desert lakes > cropland lakes > grassland lakes > forest-grassland lakes. Differences among lake types suggest that agriculture, tourism, and atmospheric transport may be critical microplastic sources. Microplastic distribution was positively correlated with farmland and artificial surface coverage, showing that land cover types related to human activities could exacerbate microplastic pollution in lakes. Redundancy analysis showed that ammonia nitrogen and pH were the key physicochemical factors affecting microplastic distribution in lakes, indicating the potential sources of microplastics in lakes and the uniqueness of microplastic occurrence characteristics in desert saline-alkaline lakes, respectively.

3.
J Colloid Interface Sci ; 658: 627-638, 2024 Mar 15.
Article in English | MEDLINE | ID: mdl-38134671

ABSTRACT

2D/2D Ni-MOF/g-C3N4 nanocomposite was utilized for desulfurization. The multilayer pore structure and high specific surface area of Ni-MOF/g-C3N4 promote the adsorption and conversion of thiophene. In addition, the two-dimensional structure exposes more active centers and shortens photogenerated carrier migration to the material surface distance, it enhances photogenerated charge transfer. The Ni-MOF and g-C3N4 construct a Z-scheme heterojunction structure with tight contact, it effectively enhances the material's photocatalytic redox ability. In the light, the material generates more photocarriers for the production of free radicals including hydroxyl radicals, holes, and superoxide radicals. The higher carrier concentration of Ni-MOF/g-C3N4 promotes the activation and oxidation of thiophene, consequently enhancing the photocatalytic desulfurization capability. The results showed that the conversion of thiophene was 98.82 % in 3 h under visible light irradiation. Radical capture experiments and analysis using electron paramagnetic resonance spectroscopy demonstrated that superoxide radicals, holes, and hydroxyl radicals played crucial roles in PODS (photocatalytic oxidative desulfurization). In addition, DFT (density functional theory) calculations were conducted to determine the paths of electron migration and TH (thiophene) adsorption energy. Finally, a mechanism for photocatalytic desulfurization was proposed based on the comprehensive analysis of theoretical calculations and experimental studies.

4.
Brief Bioinform ; 24(6)2023 09 22.
Article in English | MEDLINE | ID: mdl-37779247

ABSTRACT

Accurate identification of protein-protein interaction (PPI) sites remains a computational challenge. We propose Spatom, a novel framework for PPI site prediction. This framework first defines a weighted digraph for a protein structure to precisely characterize the spatial contacts of residues, then performs a weighted digraph convolution to aggregate both spatial local and global information and finally adds an improved graph attention layer to drive the predicted sites to form more continuous region(s). Spatom was tested on a diverse set of challenging protein-protein complexes and demonstrated the best performance among all the compared methods. Furthermore, when tested on multiple popular proteins in a case study, Spatom clearly identifies the interaction interfaces and captures the majority of hotspots. Spatom is expected to contribute to the understanding of protein interactions and drug designs targeting protein binding.


Subject(s)
Neural Networks, Computer , Protein Interaction Mapping , Protein Interaction Mapping/methods , Protein Binding , Proteins/metabolism
5.
Environ Int ; 180: 108240, 2023 10.
Article in English | MEDLINE | ID: mdl-37797479

ABSTRACT

Atmospheric particulate matter (PM) poses great adverse effects through the production of reactive oxygen species (ROS). Various components in PM are acknowledged to induce ROS formation, while the interactions among chemicals remain to be elucidated. Here, we systematically investigate the influence of Brown carbon (BrC) surrogates (e.g., imidazoles, nitrocatechols and humic acid) on hydroxyl radical (OH) generation from transition metals (TMs) in simulated lung fluid. Present results show that BrC has an antagonism (interaction factor: 20-90 %) with Cu2+ in OH generation upon the interaction with glutathione, in which the concentrations of BrC and TMs influence the extent of antagonism. Rapid OH generation in glutathione is observed for Fe2+, while OH formation is very little for Fe3+. The compositions of antioxidants (e.g., glutathione, ascorbate, urate), resembling the upper and lower respiratory tract, respond differently to BrC and TMs (Cu2+, Fe2+ and Fe3+) in OH generation and the degree of antagonism. The complexation equilibrium constants and site numbers between Cu2+ and humic acid were further analyzed using fluorescence quenching experiments. Possible complexation products among TMs, 4-nitrocatechol and glutathione were also identified using quadropule-time-of-flight mass spectrometry. The results suggest atmospheric BrC widely participate in complexation with TMs which influence OH formation in the human lung fluid, and complexation should be considered in evaluating ROS formation mediated by ambient PM.


Subject(s)
Air Pollutants , Hydroxyl Radical , Humans , Hydroxyl Radical/analysis , Hydroxyl Radical/chemistry , Reactive Oxygen Species/analysis , Humic Substances/analysis , Particulate Matter/analysis , Lung/chemistry , Glutathione , Carbon/analysis , Air Pollutants/analysis
6.
Adv Sci (Weinh) ; 10(35): e2305239, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37875393

ABSTRACT

Janus membranes with asymmetric wettability have been considered cutting-edge for energy/environmental-sustainable applications like water/fog harvester, breathable skin, and smart sensor; however, technical challenges in fabrication and accurate regulation of asymmetric wettability limit their development. Herein, by using water-assisted hydrogen-bonded (H-bonded) assembly of small molecules at water/oil interface, a facile strategy is proposed for one-step fabrication of membranes with well-regulable asymmetric wettability. Asymmetric orderly patterns, beneficial for mass transport based on abundant high-permeability sites and large surface area, are constructed on opposite membrane surfaces. Upon tuning water-assisted H-bonding via H-sites/configuration design and temperature/pH modulation, double-hydrophobic, double-hydrophilic, and hydrophobic-hydrophilic membranes are facilely fabricated. The Janus membranes show smart vapor-responsive curling and unidirectional water transport with promising flux of 1158±25 L m-2  h-1 under natural gravity and 31500±670 L·(m-2  h-1  bar-1 ) at negative pressure. This bottom-up approach offers a feasible-to-scalable avenue to precise-manipulation of Janus membranes for advanced applications, providing an effective pathway for developing tailor-made self-assembled nanomaterials.

7.
Pestic Biochem Physiol ; 193: 105429, 2023 Jun.
Article in English | MEDLINE | ID: mdl-37248007

ABSTRACT

Bacillus thuringiensis (Bt) is a popular and environment-friendly biopesticide. However, similar to other microbial pesticides, Bt is limited by ultraviolet (UV) radiation during its application, which greatly reduces its toxicity and persistence. To further know the mechanism of Bt against UV radiation, metabolomic profiles between Bt LLP29 and its UV-resistant mutant LLP29-M19 were compared, analyzed, and annotated in this study, and then a total of 61 metabolites with different abundances were detected. With P < 0.05 as the standard, a total of 12 metabolic pathways were enriched, including the TCA cycle. According to the result of RT-qPCR, the expression levels of the TCA cycle key genes in Bt LL29-M19, such as icd1 citZ, citB, sdhA, sdhB, sdhC, fumA, and mdh, were found down-regulated for 85.58%, 37.02%, 70.87%, 85.97%, 76.33%, 83.15%, 87.28%, and 35.77% than those in Bt LLP29. It was consistent with the down-regulation trend of the TCA cycle key enzymes activity in Bt LLP29-M19. Consistently, the enzyme activities of ICDH, SDH, and PDH in LLP29-M19 were detected 86.28%, 43.93%, and 83.03% lower than those in Bt LLP29. It was revealed that the reduced TCA cycle was required for Bt UV radiation resistance, which was also demonstrated by the addition of inhibitors furfural and malonic acid, respectively. Based on the result of RT-qPCR, the gene transcription levels of the main reactive oxygen species (ROS) generation pathways were down-regulated, such as EMP, however, the activity of the main degrading enzymes was up-regulated, which showed the reduction of ROS generation rate was a way for the TCA cycle to regulate the anti-ultraviolet resistance of Bt. All of these provide solid evidence for reprogramming metabolomics to strengthen Bt UV radiation resistance.


Subject(s)
Bacillus thuringiensis , Pesticides , Bacillus thuringiensis/metabolism , Reactive Oxygen Species/metabolism , Pesticides/metabolism , Endotoxins/metabolism , Bacterial Proteins/metabolism
8.
Food Funct ; 14(9): 4078-4091, 2023 May 11.
Article in English | MEDLINE | ID: mdl-37097300

ABSTRACT

Diet is an important modifiable risk factor for cardiometabolic diseases. Plant foods contain a complex mixture of nutrients and bioactive compounds such as (poly)phenols. Plant-rich dietary patterns have been associated with reduced cardiometabolic risk in epidemiological studies. However, studies have not fully considered (poly)phenols as a mediating factor in the relationship. A cross-sectional analysis was conducted in 525 healthy participants, aged 41.6 ± 18.3 years. Volunteers completed the validated European Prospective Investigation into Diet and Cancer (EPIC) Norfolk Food Frequency Questionnaire (FFQ). We investigated the associations between plant-rich dietary patterns, (poly)phenol intake, and cardiometabolic health. Positive associations were found between (poly)phenols and higher adherence to dietary scores, except for the unhealthy Plant-based Diet Index (uPDI), which was negatively associated with (poly)phenol intake. Correlations were significant for healthy PDI (hPDI), with positive associations with proanthocyanidins (r = 0.39, p < 0.01) and flavonols (r = 0.37, p < 0.01). Among dietary scores, Dietary Approaches to Stop Hypertension (DASH) showed negative associations with diastolic blood pressure (DBP), total cholesterol (TC), low-density lipoprotein cholesterol (LDL-C), and non-high-density lipoprotein cholesterol (Non-HDL-C) (stdBeta -0.12 to -0.10, p < 0.05). The Mediterranean-DASH Intervention for Neurodegenerative Delay (MIND) score was positively associated with flow-mediated dilation (FMD, stdBeta = 0.10, p = 0.02) and negatively associated with the 10-year Atherosclerotic Cardiovascular Disease (ASCVD) risk score (stdBeta = -0.12, p = 0.01). Higher intake of flavonoids, flavan-3-ols, flavan-3-ol monomers, theaflavins, and hydroxybenzoic acids (stdBeta: -0.31 to -0.29, p = 0.02) also showed a negative association with a 10-year ASCVD risk score. Flavanones showed significant associations with cardiometabolic markers such as fasting plasma glucose (FPG) (stdBeta = -0.11, p = 0.04), TC (stdBeta = -0.13, p = 0.03), and the Homeostasis Model Assessment (HOMA) of beta cell function (%B) (stdBeta = 0.18, p = 0.04). Flavanone intake was identified as a potential partial mediator in the negative association between TC and plant-rich dietary scores DASH, Original Mediterranean diet scores (O-MED), PDI, and hPDI (proportion mediated = 0.01% to 0.07%, p < 0.05). Higher (poly)phenol intake, particularly flavanone intake, is associated with higher adherence to plant-rich dietary patterns and favourable biomarkers of cardiometabolic risk indicating (poly)phenols may be mediating factors in the beneficial effects.


Subject(s)
Cardiovascular Diseases , Diet, Mediterranean , Humans , Cross-Sectional Studies , Phenol , Prospective Studies , Diet , Phenols , Cholesterol , Cardiovascular Diseases/epidemiology , Cardiovascular Diseases/prevention & control
9.
Nanomaterials (Basel) ; 13(6)2023 Mar 12.
Article in English | MEDLINE | ID: mdl-36985918

ABSTRACT

Gold nanorods (GNRs) coated with silica shells are excellent photothermal agents with high surface functionality and biocompatibility. Understanding the correlation of the coating process with both structure and property of silica-coated GNRs is crucial to their optimizing preparation and performance, as well as tailoring potential applications. Herein, we report a machine learning (ML) prediction of coating silica on GNR with various preparation parameters. A total of 306 sets of silica-coated GNRs altogether were prepared via a sol-gel method, and their structures were characterized to extract a dataset available for eight ML algorithms. Among these algorithms, the eXtreme gradient boosting (XGboost) classification model affords the highest prediction accuracy of over 91%. The derived feature importance scores and relevant decision trees are employed to address the optimal process to prepare well-structured silica-coated GNRs. The high-throughput predictions have been adopted to identify optimal process parameters for the successful preparation of dumbbell-structured silica-coated GNRs, which possess a superior performance to a conventional cylindrical core-shell counterpart. The dumbbell silica-coated GNRs demonstrate an efficient enhanced photothermal performance in vivo and in vitro, validated by both experiments and time domain finite difference calculations. This study epitomizes the potential of ML algorithms combined with experiments in predicting, optimizing, and accelerating the preparation of core-shell inorganic materials and can be extended to other nanomaterial research.

10.
Langmuir ; 39(7): 2491-2499, 2023 Feb 21.
Article in English | MEDLINE | ID: mdl-36745709

ABSTRACT

The synthesis of ionic-mesoporous-metal-organic frameworks (ionic-meso-MOFs) has received considerable interest in the fields of macromolecular adsorption, acid-base catalysis, ionic conductivity, etc.; yet, their synthesis still presents significant difficulties. In this study, functionalized mesoporous MIL-101-ILs (Cr) was facilely constructed via an in situ self-assembly method by using aromatic-anion-functionalized ionic liquids (ILs) as competitive ligands. It has been demonstrated that the inclusion of an aromatic moiety into an IL improves the coordination ability and is advantageous for the anchoring of ILs on Cr3+ via amino-metal coordination. Thus, ionic-meso-MOFs with a specific surface area of 441.9-624.9 cm2/g and an average pore diameter of 5.5 to 8.4 nm were successfully synthesized. Because of the presence of open Lewis acidic metal sites on the MOFs and basic active sites on the ILs, the resulting ionic-meso-MOFs demonstrated both an acid-base cooperative effect and a mesoporous structure, indicating a high potential for acid-base catalysis. This in situ synthesis procedure for ionic mesoporous MOFs offers a simple method for developing and fabricating multifunctional mesoporous materials.

11.
Crit Rev Food Sci Nutr ; : 1-19, 2023 Jan 19.
Article in English | MEDLINE | ID: mdl-36655428

ABSTRACT

Lycopene is a promising biological functional component with various biological activities and excellent pharmacological activities. However, its low water solubility and stability lead to low oral bioavailability, which limits its edible and medicinal research. Then, it is necessary to explore effective methods to protect lycopene from destruction and further exploit its potential benefits. The absorption of lycopene in vivo is affected by solubility, stability, isomer type, emulsifying ability, difficulty in forming micelles in vivo, and interaction with food components. Emulsions, pickering emulsions, micelles, liposomes, bigels, beasds, solid dispersions, microcapsules, nanoparticles, electrospinning and other drug delivery systems can be used as good strategies to improve the stability and bioavailability of lycopene. In this paper, the absorption process of lycopene in vivo and the factors affecting its bioavailability were discussed, and the preparation strategies for improving the stability, bioavailability, and health benefits of lycopene were reviewed, to provide some clues and references for the full utilization of lycopene in the field of health. However, there are still various unresolved mysteries regarding the metabolism of lycopene. The safety and in vivo studies of various preparations should be further explored, and the above technologies also face the challenge of industrial production.

12.
Bioinformatics ; 39(1)2023 01 01.
Article in English | MEDLINE | ID: mdl-36637205

ABSTRACT

MOTIVATION: Many studies have shown that IDH mutation and 1p/19q co-deletion can serve as prognostic signatures of glioma. Although these genetic variations affect the expression of one or more genes, the prognostic value of gene expression related to IDH and 1p/19q status is still unclear. RESULTS: We constructed an ensemble gene pair signature for the risk evaluation and survival prediction of glioma based on the prior knowledge of the IDH and 1p/19q status. First, we separately built two gene pair signatures IDH-GPS and 1p/19q-GPS and elucidated that they were useful transcriptome markers projecting from corresponding genome variations. Then, the gene pairs in these two models were assembled to develop an integrated model named Glioma Prognostic Gene Pair Signature (GPGPS), which demonstrated high area under the curves (AUCs) to predict 1-, 3- and 5-year overall survival (0.92, 0.88 and 0.80) of glioma. GPGPS was superior to the single GPSs and other existing prognostic signatures (avg AUC = 0.70, concordance index = 0.74). In conclusion, the ensemble prognostic signature with 10 gene pairs could serve as an independent predictor for risk stratification and survival prediction in glioma. This study shed light on transferring knowledge from genetic alterations to expression changes to facilitate prognostic studies. AVAILABILITY AND IMPLEMENTATION: Codes are available at https://github.com/Kimxbzheng/GPGPS.git. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.


Subject(s)
Brain Neoplasms , Glioma , Humans , Brain Neoplasms/genetics , Brain Neoplasms/metabolism , Prognosis , Glioma/genetics , Chromosome Aberrations , Mutation , Chromosomes, Human, Pair 1/genetics , Chromosomes, Human, Pair 1/metabolism
13.
ACS Appl Mater Interfaces ; 15(6): 8751-8760, 2023 Feb 15.
Article in English | MEDLINE | ID: mdl-36719403

ABSTRACT

Facing the increasingly complex and deteriorated environment, people's thermal comfort and health requirements are expanding. Therefore, wearable materials with integrated functions have progressed rapidly due to the fair compatibility for various functions and precise regulation. In this work, a laminated MXene foam/cellulose@LDH composite membrane was fabricated via a facile process consisting of in situ growth, vacuum filtration, and foaming for asymmetrical personal thermal management and electromagnetic interference shielding. In detail, the Zn-Al LDH side shows a high solar reflectance of 0.89 and an infrared emissivity of 0.97 in the atmospheric window, demonstrating the superior radiative cooling property. In contrast, the outstanding radiative warming performance is revealed by the high solar absorption (0.72) and infrared reflectivity (0.55) of the MXene foam. As a result, prominent temperature differences were achieved during the validation test. Compared to the control group, an 18 °C reduction of the Zn-Al LDH side and a 9.6 °C increment of the MXene foam side were observed, bringing out the excellent optical properties and radiative thermal management performances. What is more, due to the outstanding electrical conductivity of MXene, a rapid and prominent temperature rise to 44.2 °C could be expected by applying a low voltage of 1 V to provide active joule warmth. In addition, hydrophobization and the associated stain resistance were explained by the high water contact angles of obtained membranes. The excellent electromagnetic interference shielding performance (43.9 dB) given by the introduction of MXene provides a prospective candidate to replace the common shielding materials. The results, in general, provide a promising strategy for meeting the updating requirements for comfortable living in a world full of potential thermal and health threats.

14.
Spectrochim Acta A Mol Biomol Spectrosc ; 289: 122134, 2023 Mar 15.
Article in English | MEDLINE | ID: mdl-36512966

ABSTRACT

In this work, a simple and sensitive SERS-based miRNA biosensor was constructed based on porous MOFs nanoparticles and efficient subject-object recognition ability. MOFs as a container can package lots of signal probe neutral red (NR) for the advantages of three dimensional structure and porosity. The partially complementary duplex DNA can as a "lock" to lock up the hole for obtaining a weak Raman signal. In the present of miRNA, miRNA just like a "key" to open the duplex structure with the results of releasing NR. At this time, the released NR can be captured by SERS substrate AuNS@CB[7] for the subject-object recognition ability to produce a strong Raman signal which was positive correlation to target miRNA. By this way, the proposed SERS biosensor can achieve sensitively and selectively detect miRNA with a detection limit of 0.562 fM. This MOF-based SERS biosensor also be hopeful application for clinical diagnostics.


Subject(s)
Biosensing Techniques , Metal Nanoparticles , MicroRNAs , Nanoparticles , Porosity , Spectrum Analysis, Raman/methods , Biosensing Techniques/methods , Gold/chemistry , Limit of Detection , Metal Nanoparticles/chemistry
15.
Sci Total Environ ; 854: 158599, 2023 Jan 01.
Article in English | MEDLINE | ID: mdl-36089013

ABSTRACT

China has experienced severe air pollution in the past decade, especially PM2.5 and emerging ozone pollution recently. In this study, we comprehensively analyzed long-term population exposure risks to PM2.5 and ozone in urban agglomerations of China during 2015-2021 regarding two-stage clean-air actions based on the Ministry of Ecology and the Environment (MEE) air monitoring network. Overall, the ratio of the population living in the regions exceeding the Chinese National Ambient Air Quality Standard (35 µg/m3) decreases by 29.9 % for PM2.5 from 2015 to 2021, driven by high proportions in the Middle Plain (MP, 42.3 %) and Lan-Xi (35.0 %) regions. However, this ratio almost remains unchanged for ozone and even increases by 1.5 % in the MP region. As expected, the improved air quality leads to 234.7 × 103 avoided premature mortality (ΔMort), mainly ascribed to the reduction in PM2.5 concentration. COVID-19 pandemic may influence the annual variation of PM2.5-related ΔMort as it affects the shape of the population exposure curve to become much steeper. Although all eleven urban agglomerations share stroke (43.6 %) and ischaemic heart disease (IHD, 30.1 %) as the two largest contributors to total ΔMort, cause-specific ΔMort is highly regional heterogeneous, in which ozone-related ΔMort is significantly higher (21 %) in the Tibet region than other urban agglomeration. Despite ozone-related ΔMort being one order of magnitude lower than PM2.5-related ΔMort from 2015 to 2021, ozone-related ΔMort is predicted to increase in major urban agglomerations initially along with a continuous decline for PM2.5-related ΔMort from 2020 to 2060, highlighting the importance of ozone control. Coordinated controls of PM2.5 and O3 are warranted for reducing health burdens in China during achieving carbon neutrality.


Subject(s)
Air Pollutants , Air Pollution , COVID-19 , Ozone , Humans , Air Pollutants/analysis , Particulate Matter/analysis , Pandemics , COVID-19/epidemiology , Air Pollution/analysis , China/epidemiology
16.
Brief Bioinform ; 25(1)2023 11 22.
Article in English | MEDLINE | ID: mdl-38171932

ABSTRACT

N6-methyladenosine (m6A) RNA methylation is the predominant epigenetic modification for mRNAs that regulates various cancer-related pathways. However, the prognostic significance of m6A modification regulators remains unclear in glioma. By integrating the TCGA lower-grade glioma (LGG) and glioblastoma multiforme (GBM) gene expression data, we demonstrated that both the m6A regulators and m6A-target genes were associated with glioma prognosis and activated various cancer-related pathways. Then, we paired m6A regulators and their target genes as m6A-related gene pairs (MGPs) using the iPAGE algorithm, among which 122 MGPs were significantly reversed in expression between LGG and GBM. Subsequently, we employed LASSO Cox regression analysis to construct an MGP signature (MrGPS) to evaluate glioma prognosis. MrGPS was independently validated in CGGA and GEO glioma cohorts with high accuracy in predicting overall survival. The average area under the receiver operating characteristic curve (AUC) at 1-, 3- and 5-year intervals were 0.752, 0.853 and 0.831, respectively. Combining clinical factors of age and radiotherapy, the AUC of MrGPS was much improved to around 0.90. Furthermore, CIBERSORT and TIDE algorithms revealed that MrGPS is indicative for the immune infiltration level and the response to immune checkpoint inhibitor therapy in glioma patients. In conclusion, our study demonstrated that m6A methylation is a prognostic factor for glioma and the developed prognostic model MrGPS holds potential as a valuable tool for enhancing patient management and facilitating accurate prognosis assessment in cases of glioma.


Subject(s)
Glioblastoma , Glioma , Humans , Glioma/genetics , Adenine , Adenosine/genetics
17.
Geophys Res Lett ; 49(19): e2022GL100014, 2022 Oct 16.
Article in English | MEDLINE | ID: mdl-36582259

ABSTRACT

An interplanetary shock can abruptly compress the magnetosphere, excite magnetospheric waves and field-aligned currents, and cause a ground magnetic response known as a sudden commencement (SC). However, the transient (<∼1 min) response of the ionosphere-thermosphere system during an SC has been little studied due to limited temporal resolution in previous investigations. Here, we report observations of a global reversal of ionospheric vertical plasma motion during an SC on 24 October 2011 using ∼6 s resolution Super Dual Auroral Radar Network ground scatter data. The dayside ionosphere suddenly moved downward during the magnetospheric compression due to the SC, lasting for only ∼1 min before moving upward. By contrast, the post-midnight ionosphere briefly moved upward then moved downward during the SC. Simulations with a coupled geospace model suggest that the reversed E ⃗ × B ⃗ vertical drift is caused by a global reversal of ionospheric zonal electric field induced by magnetospheric compression during the SC.

18.
Molecules ; 27(18)2022 Sep 09.
Article in English | MEDLINE | ID: mdl-36144589

ABSTRACT

The design of high-efficiency CO2 adsorbents with low cost, high capacity, and easy desorption is of high significance for reducing carbon emissions, which yet remains a great challenge. This work proposes a facile construction strategy of amino-functional dynamic covalent materials for effective CO2 capture from flue gas. Upon the dynamic imine assembly of N-site rich motif and aldehyde-based spacers, nanospheres and hollow nanotubes with spongy pores were constructed spontaneously at room temperature. A commercial amino-functional molecule tetraethylenepentamine could be facilely introduced into the dynamic covalent materials by virtue of the dynamic nature of imine assembly, thus inducing a high CO2 capacity (1.27 mmol·g-1) from simulated flue gas at 75 °C. This dynamic imine assembly strategy endowed the dynamic covalent materials with facile preparation, low cost, excellent CO2 capacity, and outstanding cyclic stability, providing a mild and controllable approach for the development of competitive CO2 adsorbents.

19.
Sci Total Environ ; 848: 157746, 2022 Nov 20.
Article in English | MEDLINE | ID: mdl-35926610

ABSTRACT

In this study, volatile organic compounds (VOCs) at a major industrial park in Yangtze River Delta Region, China, along with an urban site had been investigated for three years (2018-2020). The daily-mean concentration of total 97 VOCs in the industrial park (224.3 ± 139.1 µg/m3) was about twice that of urban site (112.0 ± 64.2 µg/m3). Halohydrocarbons were predominant VOCs species at both sites accounting for 39.0 % and 32.2 % in industrial and urban sites, respectively. Annual-average concentrations of total VOCs slowed down gradually in industrial park, while that of the urban site increased annually. Evident seasonal and diurnal variations were observed for VOCs concentration in both sites. Higher VOCs concentrations appeared in summer for industrial park, and high concentrations generally appeared at 8:00 and 19:00-20:00 in two sites. Diagnostic ratios of m/p-xylene to ethylbenzene indicated vehicle emissions and solvent volatilization were main sources of VOCs in industrial site during winter. Further positive matrix factorization identified fuel usage and industry source as major sources in industrial park and urban site, respectively. Ozone formation potential calculations showed aromatics contributed most to ozone formation, and benzyl chloride was a key species when its concentration was high. Further empirical kinetic modeling approach revealed ozone formation in industrial park was in VOCs-limited regime. Through air mass trajectory analysis, air pollutants especially ozone from industrial park will be transported to stadiums by northeast wind during the 2022 Asian Games. The reductions in VOCs emissions from industrials are highly recommended for ozone control in 2022 Asian Games.


Subject(s)
Air Pollutants , Ozone , Volatile Organic Compounds , Air Pollutants/analysis , China , Environmental Monitoring , Ozone/analysis , Solvents/analysis , Vehicle Emissions/analysis , Volatile Organic Compounds/analysis , Xylenes
20.
Front Mol Biosci ; 9: 806727, 2022.
Article in English | MEDLINE | ID: mdl-35495630

ABSTRACT

Background: Telomerase reverse transcriptase promoter (TERT-p) mutation has been frequently found, but associated with contrary prognosis, in both low-grade gliomas and glioblastomas. For the low-grade gliomas (Grades II-III), TERT-p mutant patients have a better prognosis than the wildtype patients, whereas for the GBMs (Grade IV), TERT-p mutation is related to a poor prognosis. We hypothesize that there exist high-risk patients in LGGs who share GBM-like molecular features, including TERT-p mutation, and need more intensive treatment than other LGGs. A molecular signature is needed to identify these high-risk patients for an accurate and timely treatment. Methods: Using the within-sample relative expression orderings of gene pairs, we identified the gene pairs with significantly stable REOs, respectively, in both the TERT-p mutant LGGs and GBMs but with opposite directions in the two groups. These reversely stable gene pairs were used as the molecular signature to stratify the LGGs into high-risk and low-risk groups. Results: A signature consisting of 21 gene pairs was developed, which can classify LGGs into two groups with significantly different overall survival. The high-risk group has a similar genetic mutation profile and a similar survival profile as GBMs, and these high-risk tumors may progress to a more malignant state. Conclusion: The 21 gene-pair signature based on REOs is capable of identifying high-risk patients in LGGs and guiding the clinical choice for appropriate and timely intervention.

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