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1.
Integr Zool ; 2024 May 02.
Article in English | MEDLINE | ID: mdl-38695096

ABSTRACT

The Tibetan antelope (Pantholops hodgsonii), blue sheep (Pseudois nayaur), and Tibetan sheep (Ovis aries) are the dominant small ruminants in the Three-River-Source National Park (TRSNP). However, knowledge about the association between gut microbiota and host adaptability remains poorly understood. Herein, multi-omics sequencing approaches were employed to investigate the gut microbiota-mediated forage adaption in these ruminants. The results revealed that although wild ruminants (WR) of P. hodgsoni and P. nayaur were faced with severe foraging environments with significantly low vegetation coverage and nutrition, the apparent forage digestibility of dry matter, crude protein, and acid detergent fiber was significantly higher than that of O. aries. The 16s rRNA sequencing showed that the gut microbiota in WR underwent convergent evolution, and alpha diversity in these two groups was significantly higher than that in O. aries. Moreover, indicator species, including Bacteroidetes and Firmicutes, exhibited positive relationships with apparent forage digestibility, and their relative abundances were enriched in the gut of WR. Enterotype analysis further revealed that enterotype 1 belonged to WR, and the abundance of fatty acid synthesis metabolic pathway-related enzyme genes was significantly higher than enterotype 2, represented by O. aries. Besides, the metagenomic analysis identified 14 pathogenic bacterial species, among which 10 potentially pathogenic bacteria were significantly enriched in the gut microbiota of O. aries. Furthermore, the cellulolytic strains and genes encoding cellulase and hemicellulase were significantly enriched in WR. In conclusion, our results provide new evidence of gut microbiota to facilitate wildlife adaption in severe foraging environments of the TRSNP, China.

2.
Sci Total Environ ; 923: 171486, 2024 May 01.
Article in English | MEDLINE | ID: mdl-38447723

ABSTRACT

The intra-annual variability in sediment discharge was considerably influenced by the climate variability and vegetation dynamics. Because of the coupled or relationships between climatic and vegetation variables, it is still challenging to decouple the direct and indirect effects of climate variability and vegetation dynamics on hydrological and sediment transport processes. The purpose of this study is to decouple influences of individual driving force on intra-annual distribution of sediment discharge during 2003-2017 using the partial least squares structural equation model (PLS-SEM) method in four typical karst watersheds of Southwest China. The coefficient of variation (Cv), Completely regulation coefficient (Cr), Lorenz asymmetry coefficient and Gini coefficient were used to represent the intra-annual sediment discharge variability. Results showed that the monthly sediment discharge (190 % < Cv < 353 %) exhibited greater variability than its potential affecting factors (18 % < Cv < 101 %). From the PLS-SEM analysis, the water discharge, climate, and vegetation together explain 57 %-75 %, 64 %-79 %, and 53 %-80 % of the total variance in Cv, Cr, and Gini coefficient, respectively. Specifically, water discharge exerts the largest influence on sediment discharge variability (0.65 ≤ direct effect ≤0.97, P < 0.05), while vegetation dynamic mainly indirectly affects sediment discharge variability (-0.88 ≤ indirect effect ≤ -0.01) through influencing water discharge. The climate factors also principally indirectly affect the sediment discharge variability (-0.47 ≤ indirect effect ≤0.19) by affecting water discharge and vegetation. The PLS-SEM can effectively reveal the driving force and influencing mechanism of intra-annual sediment discharge changes, and provide an important reference for regional soil and water resources management in karst watersheds. Future studies can decouple the influences of the extreme climate, unique lithology, discontinuous soil, heterogeneous landscape, and special geomorphology on spatial variability in sediment discharge across different karst watersheds.

3.
Food Chem ; 447: 138855, 2024 Jul 30.
Article in English | MEDLINE | ID: mdl-38520902

ABSTRACT

Yak meat is more popular among consumers because of its high nutritional value, but little attention has been paid to its meat quality, which is affected by different phenology periods grass. We hypothesized that seasonal variations in grass composition influenced the ruminal bacteria community, and eventually affected the meat quality of yaks. This study aims to investigate the relationship of meat quality in grazing yak as well as the key rumen bacteria using targeted and untargeted metabolomics and 16S rRNA during different phenology periods. The main three altered metabolic pathways in grazing yak, including amino acids biosynthesis, glutathione metabolism, and fatty acids biosynthesis, were found in the grass period (GP) group compared to the regreen period (RP) and hay period (HP) groups. The GP group had higher concentrations of flavor amino acids (FAA), polyunsaturated fatty acids (PUFA), and a lower ratio of n-6/n-3 compared with the RP group. Correlation analysis results showed that Rikenellaceae_RC9_gut_group was positively correlated with fatty acids and lipid metabolites, which might be involved in lipid metabolism. Pediococcus had a positive correlation with biological peptides, which could be involved in the metabolism of bioactive compounds. In conclusion, grass in different phenology periods was associated with modified amino acids and fatty acids composition of yak meat as well as altered regulation of biological pathways, which was correlated with changes in rumen bacterial communities.


Subject(s)
Bacteria , Fatty Acids , Animals , Cattle , Tibet , RNA, Ribosomal, 16S/genetics , Fatty Acids/analysis , Bacteria/metabolism , Meat/analysis , Amino Acids/metabolism
4.
BMC Microbiol ; 24(1): 62, 2024 Feb 19.
Article in English | MEDLINE | ID: mdl-38373936

ABSTRACT

BACKGROUND: In this study, we investigated the effects of alpine meadow in different phenological periods on ruminal fermentation, serum biochemical indices, and gastrointestinal tract microbes in grazing yak on the Qinghai-Tibetan Plateau. A total of eighteen female freely grazing yaks with an average age of 3 years old and a body weight of 130 ± 19 kg were selected. According to the plant phenological periods, yaks were randomly allocated to one of three treatments: (1) regreen periods group (RP, n = 6); (2) grassy periods group (GP, n = 6); and (3) hay periods group (HP, n = 6). At the end of the experiment, the blood, rumen fluids, and rectal contents were collected to perform further analysis. RESULTS: The concentrations of total volatile fatty acid (TVFA), acetate, glucose (GLU), triglyceride (TG), cholesterol (CHO), high density lipoprotein (HDL), and low density lipoprotein (LDL) were higher in the GP group than in the HP group (P < 0.05). However, compared with the RP and GP groups, the HP group had higher concentrations of isobutyrate, isovalerate, valerate, and creatinine (CREA) (P < 0.05). The abundance of Prevotella in the rumen, and the abundances of Rikenellaceae_RC9_gut_group, Eubacterium_coprostanoligenes_group, and Prevotellaceae_UCG-004 in the gut were higher in the GP group compared with the HP group (P < 0.05). The HP had higher abundance of Eubacterium_coprostanoligenes_group in the rumen as well as the abundances of Romboutsia and Arthrobacter in the gut compared with the RP and GP groups (P < 0.05). CONCLUSIONS: Based on the results of rumen fermentation, serum biochemical, differential biomarkers, and function prediction, the carbohydrate digestion of grazing yak would be higher with the alpine meadow regreen and grassy due to the gastrointestinal tract microbes. However, the risk of microbe disorders and host inflammation in grazing yak were higher with the alpine meadow wither.


Subject(s)
Grassland , Rumen , Animals , Cattle , Bacteria/genetics , Bacteroidetes , Fermentation , Gastrointestinal Tract , Rumen/microbiology , Tibet
5.
Front Biosci (Landmark Ed) ; 28(11): 314, 2023 11 28.
Article in English | MEDLINE | ID: mdl-38062819

ABSTRACT

BACKGROUND: Necroptosis is a programmed necrotic cell death, in which dying cells rupture and release intracellular components that trigger a proinflammatory response. The current study aimed at probing the circular RNA (circRNA)-mediated regulatory mechanisms in necroptosis in premature ovarian failure (POF). METHODS: CircRNA sequencing analysis was conducted in ovarian tissues of control and POF rats and transcriptome microarrays were acquired from the GSE33423 dataset. Differential expression analysis of circRNAs and mRNAs was executed between the POF and control data. Both a necroptosis-based circRNA-microRNA (miRNA)-mRNA network and a protein-protein interaction (PPI) network were established. Then, the functional annotation and immunological traits were analyzed. RESULTS: Totally, 1266 upregulated and 1283 downregulated circRNAs as well as 1101 upregulated and 1168 downregulated mRNAs were determined in the POF rats versus the controls. The differentially expressed mRNAs predominantly correlated with necroptosis. The circRNA-miRNA-mRNA networks of downregulated necroptosis genes (comprising rno_circRNA_004995-rno-miR-148b-5p-H2afy2, rno_circRNA_016998-rno-miR-29a-5p-Hmgb1, and rno_circRNA_017593-rno-miR-29a-5p-Hmgb1) and upregulated necroptosis genes (comprising rno_circRNA_015900-rno-miR-935-Stat1, rno_circRNA_007946-rno-miR-328a-3p-Stat5a, rno_circRNA_007947-rno-miR-328a-3p-Stat5a, rno_circRNA_005064-rno-miR-18a-5p-Stat1, rno_circRNA_005064-rno-miR-18a-5p-Stat5a, rno_circRNA_005115-rno-miR-22-3p-Stat1, rno_circRNA_009028-rno-miR-342-5p-Stat1, rno_circRNA_011240-rno-miR-1224-Stat5a, rno_circRNA_016078-rno-miR-711-Stat5a) were built. POF-specific necroptosis genes (STAT1, STAT5A, PLA2G4A, HMG1L1, HMGB1, AGER, EGFR, HDAC7, IFNA1, IL10RB, IL27RA, PYGL, SOCS1, TRADD, CXCL10, DDX5, EZH2, FADS2, FER, H2AFY2, HIST1H2AF, IFI44L, IL27, IRGM, MX1, NFKB2, PAFAH2, PEMT, PGM2L1, PGR, PHKA2, and PLB1) were selected since they displayed notable associations with most immune cells, immune checkpoints, chemokines, human leukocyte antigen (HLA) molecules, and immune receptors. CONCLUSIONS: Altogether, we proposed the presence of widespread regulatory mechanisms of circRNAs in necroptosis and demonstrated that altered circRNA biogenesis might contribute to POF by affecting necroptosis.


Subject(s)
HMGB1 Protein , MicroRNAs , Primary Ovarian Insufficiency , Female , Humans , Rats , Animals , RNA, Circular/genetics , Primary Ovarian Insufficiency/genetics , Necroptosis/genetics , MicroRNAs/genetics , MicroRNAs/metabolism , RNA, Messenger/genetics , Phosphorylase Kinase
6.
J Med Case Rep ; 17(1): 466, 2023 Nov 10.
Article in English | MEDLINE | ID: mdl-37946273

ABSTRACT

BACKGROUND: Cystic echinococcosis (CE) is a parasitic zoonotic disease caused by the larval stage of Echinococcus granulosus. The liver and lungs are the most common sites for infection. Infection of the intradural spine is rare. CASE PRESENTATION: A 45-year-old woman of Han ethnicity presented with a chronic history of recurrent lumbar pain. Magnetic resonance imaging of the lumbar spine revealed the classical characteristic of multiple cystic lesions of variable sizes, manifesting a "bunch of grapes" appearance, localized within the spinal canal at the L4-L5 vertebral level. In the meanwhile, metagenomic next-generation sequencing identified Echinococcosis granulosa. The patient underwent surgery to remove the cyst entirely and subsequently took albendazole 400 mg orally twice daily for 6 months. CONCLUSION: Spinal CE should be suspected in patients with multiple spinal cystic lesions and zoonotic exposure. metagenomic next-generation sequencing serves as a robust diagnostic tool for atypical pathogens, particularly when conventional tests are inconclusive. Prompt and aggressive treatment for spinal cystic echinococcosis is imperative, and further research is warranted for improved diagnostic and therapeutic strategies.


Subject(s)
Echinococcosis , Female , Humans , Middle Aged , Echinococcosis/diagnostic imaging , Magnetic Resonance Imaging , Lumbar Vertebrae/pathology , High-Throughput Nucleotide Sequencing
7.
Animals (Basel) ; 13(15)2023 Aug 02.
Article in English | MEDLINE | ID: mdl-37570302

ABSTRACT

This study aimed to comprehensively evaluate the characteristics in the longissimus thoracis et lumborum (LTL) muscle of Chaka (CK) sheep and Tibetan (TB) sheep, and transcriptomics-metabolomics association analysis was used to find the possible genes, differential metabolites, and significant differential metabolic pathways that lead to meat quality differences. Based on the researched results, the nutritional quality of meat, including the contents of ether extract (11.95% vs. 10.56%), unsaturated fatty acid (51.20% vs. 47.69%), and polyunsaturated fatty acid (5.71% vs. 3.97%), were better in TB sheep than in CK sheep, while the CK sheep has better muscle fiber characteristics, such as the total number (62 vs. 45) and muscle fiber density (1426.54 mm2 vs. 1158.77 mm2) and flavor. Omics research has shown that the key differential metabolites and metabolic pathways were dominated by amino acid metabolism, particularly the glutathione metabolism, taurine and hypotaurine metabolism, and lipid metabolism-related pathways, such as glycerophospholipid metabolism and the sphingolipid signaling pathway. The intermediate metabolite sn-Glycerol 3-phosphoethanolamine played a key role in determining sheep meat quality, which was regulated by GPAT2, PLPP2, AGPAT1, PNPLA2, and GPAT4 and correlated with meat color, texture, and flavor. Overall, these results will provide effective information and more evidence to support further exploration of valuable biomarkers of meat quality.

8.
BMC Infect Dis ; 22(1): 867, 2022 Nov 21.
Article in English | MEDLINE | ID: mdl-36411423

ABSTRACT

BACKGROUND: Highly active anti-retroviral therapy (HAART) can successfully suppress human immunodeficiency virus (HIV) viral replication and reconstruct immune function reconstruction in HIV-1-infected patients. However, about 15-30% of HIV-1-infected patients still fail to recover their CD4+ T cell counts after HAART treatment, which means immune reconstruction failure. Pyroptosis plays an important role in the death of CD4+ T cells in HIV-1- infected patients. The study aims to explore the association between the expression of pyroptosis in peripheral blood and immune function reconstruction in HIV-1- infected patients. METHODS: One hundred thirty-five HIV-1-infected patients including immunological non-responders (INR) group, immunological responders (IR) group and normal immune function control (NC) group were analyzed. The expression of GSDMD and Caspase-1 in peripheral blood of HIV-1-infected patients were measured by qPCR. The concentrations of GSDMD, Caspase-1, IL-1ß and IL-18 in the peripheral serum were quantified by ELISA. The associations between the expression of pyroptosis in peripheral blood and immune function reconstruction were analyzed using multivariate logistic models. RESULTS: The relative expression of GSDMD mRNA and caspase-1 mRNA in peripheral blood, as well as the expression of IL-18 cytokine in the INR, were significantly higher than those in the IR and NC (P < 0.05). There was no significant difference in the expression of IL-1ß cytokine (P > 0.05). Multivariate logistic analysis showed that the patients with baseline CD4+ T cell counts less than 100 cells/µL (aOR 7.051, 95% CI 1.115-44.592, P = 0.038), high level of expression of Caspase-1mRNA (aOR 2.803, 95% CI 1.065-7.377, P = 0.037) and IL-18 cytokine (aOR 10.131, 95% CI 1.616-63.505, P = 0.013) had significant poor CD4+ T cell recovery. CONCLUSIONS: The baseline CD4+ T cell counts less than 100 cells/µL, high relative expression of Caspase-1 mRNA, and high expression of IL-18 cytokine are associated factors that affect the reconstruction of immune function.


Subject(s)
HIV Infections , HIV-1 , Humans , Cross-Sectional Studies , Interleukin-18/genetics , Pyroptosis , Caspase 1 , RNA, Messenger/analysis
9.
Sci Total Environ ; 824: 153874, 2022 Jun 10.
Article in English | MEDLINE | ID: mdl-35176356

ABSTRACT

Karst landscapes cover 7-12% of Earth's continental area, and approximately 25% of the world's population partially or completely relies on drinking water from karst aquifers. Water shortages are a challenge worldwide in karst mountainous landscapes. Knowledge of intra-annual variability in runoff and the potential drivers of variability is important for optimizing regional water resources use. The objectives of this study were to investigate temporal variations in the distribution of intra-annual runoff during 2003-2017 in six karst watersheds in southwest China and to identify the key drivers of these variations. The Gini coefficient and Lorentz asymmetry coefficient were used to represent intra-annual variability in runoff. Partial least squares-structural equation modeling (PLS-SEM) was used to decouple the effects of climate variables and vegetation dynamics on the distribution of intra-annual runoff. In all six watersheds, the Gini coefficient ranged from 0.15 to 0.59, with a mean value of greater than 1 for the Lorentz asymmetry coefficient. The heterogeneity of intra-annual runoff distribution showed a decreasing trend from 2003 to 2017. Climate variables and vegetation dynamics strongly influenced intra-annual variability in runoff and accounted for 19-63% and 17-67% of the variation in the Gini coefficient and Lorentz asymmetry coefficient, respectively. Vegetation was negatively correlated with the Gini coefficient, and the direct effect of climate on the Gini coefficient was greater than its indirect effect on the Gini coefficient through vegetation. As compared with traditional multivariate statistical methods, PLS-SEM provides additional valuable information, including information on the direct and indirect impacts of climate and vegetation on the distribution of intra-annual runoff. PLS-SEM is recommended as an effective approach for disentangling the coupled relationships between predictors and hydrological characteristics under different circumstances.

10.
J Colloid Interface Sci ; 615: 273-281, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35139448

ABSTRACT

Realizing the simultaneous morphology and electrical conductivity tuning of non-noble metal nanocatalysts is urgently desired for promoting their intrinsic activity toward oxygen evolution reaction (OER), while it is still challenging. Herein, we have demonstrated that the morphology and conductivity of FeNi3 alloy can be finely tailored via introducing the graphene carbon dots (GCDs). Benefitting from the enlarged active areas, significantly improved electrical conductivity, and strong synergistic coupling effect, the optimized FeNi3@GCDs-10 shows extraordinary electrocatalytic performance towards OER by delivering a current density of 10 mA cm-2 with the overpotential of 238 mV, as well as small Tafel slope of 48.7 mV dec-1. Density functional theory (DFT) calculations reveal that Fe is the dominated active sites for boosting water dissociation. In addition, the incorporation of GCDs can also strength the adsorption of *O and lower the energy barrier for the transformation from *OH to *O, thereby optimizing the free energy of *O and greatly promoting the OER activity.

11.
Sci Total Environ ; 788: 147805, 2021 Sep 20.
Article in English | MEDLINE | ID: mdl-34134380

ABSTRACT

The terrestrial ecosystem gross primary productivity (GPP) plays an important role in the global carbon cycle and ecosystem functions. However, the estimates of GPP still have large uncertainties due to insufficient understanding of the photosynthesis-temperature relationship and maximum light use efficiency (LUEmax). We used satellite-derived proxies of GPP to derive optimum, minimum, and maximum temperature for photosynthesis at the ecosystem scale, which was then used to construct a new temperature stress expression. This study improves the MODIS-based light use efficiency model through coupling the optimized LUEmax with the new proposed temperature stress expression. The new model (R2 = 0.81, RMSE = 17.8 gC m-2 (16 d)-1) performed better than the MODIS GPP products (R2 = 0.67, RMSE = 30.4 gC m-2 (16 d)-1), especially for evergreen broadleaf forests and croplands. The mean annual GPP over China is 5.7 ± 0.27 PgC, and the GPP significantly increased by 0.046 ± 0.006 PgC year-1 during 2001-2018. This study provides a potential method for future projections of terrestrial ecosystem functioning.


Subject(s)
Ecosystem , Photosynthesis , China , Forests , Seasons , Temperature
12.
Sci Total Environ ; 775: 145876, 2021 Jun 25.
Article in English | MEDLINE | ID: mdl-33631590

ABSTRACT

Secondary vegetation succession can alter soil functions and quality. However, data on changes to soil quality at different stages of vegetation succession in karst areas of southwest China is limited. This study aimed to evaluate the effects of different vegetation succession on soil quality and further to identify the factors that influencing soil quality. Secondary forest, shrub, grass, and cropland (as a reference) were selected and sampled in the subtropical karst of southwest China. Soil quality index (SQI) was developed by two methods of Total Data Set (TDS) and Minimum Data Set (MDS). Based on principal component analysis (PCA), soil organic carbon, silt, available phosphorous, available potassium, soil thickness, and soil water content were identified as the most representative indicators for the MDS. Both methods showed that the highest SQI values were observed in secondary forest, followed by shrub and grass, and the cropland values were the lowest. This showed vegetation succession significantly influenced on soil physiochemical properties and thus on soil quality. MDS could adequately represent TDS to quantify the effects of vegetation succession on soil quality since similar SQI results were derived from the two methods (R2 = 0.68, P < 0.01). The influencing factors explained about 75% of the total variation in SQI using a generalized linear model. Vegetation types accounted for the largest proportion of the SQI variability followed by restoration time, indicating these factors significantly affect soil quality during vegetation succession. In general, vegetation succession significantly influenced soil properties, and also has long-term and positive effects on soil quality during vegetation restoration. This study helps to understand the changes in soil quality during vegetation succession and provides guidance for the sustainable management of revegetation in subtropical karst regions in China.


Subject(s)
Carbon , Soil , Carbon/analysis , China , Ecosystem , Forests
13.
BMC Infect Dis ; 19(1): 203, 2019 Feb 28.
Article in English | MEDLINE | ID: mdl-30819109

ABSTRACT

BACKGROUND: Nontuberculous mycobacterial (NTM) disease is commonly an opportunistic infection frequently found in immunocompromised individuals, but sometimes can also be found in the immunocompetent hosts, especially in East Asians. The NTM separation rate in China is increasing, which reminds us to focus on NTM infections in immunocompromised populations. CASE PRESENTATION: A 43-year-old woman with a recurrent fever for more than 8-month and a right forehead surgical wounds unhealed for more than 6-month was admitted to our hospital on February 22, 2018. On arrival, several elliptic ulcers were obvious on the right forehead with pus and fibrin exudation, and the skin around the lesions was tender, reddish, no sense of fluctuation. The result of HIV serology test was negative. CD4+ T cell count was normal and tuberculosis antibody was negative. CT of the chest and head showed bone destruction. Skin biopsy on the right forehead was performed on March 13, 2018, and pathological examination of the excisional biopsy specimen found inflammatory granuloma and suppurative inflammatory changes. Broad-spectrum antibiotics were treated but the effect seemed discontent. Then debridement and skin grafting were performed on the right frontal ulcer under general anesthesia on April 3, 2018. The skin tissue culture that resected on March 13, 2018 found Nontuberculous mycobacteria grown after 78 days, so clarithromycin, ethambutol, protionamide, and amoxicillin clavulanate potassium were prescribed for anti-nontuberculous mycobacteria treatment beginning on May 31, 2018. In reviewing the case, Mycobacterium avium (M. avium) was identified in the skin tissue resected on April 3, 2018 by polymerase chain reaction (PCR) and the serum test of anti-interferon-γ autoantibodies was positive. CONCLUSIONS: This is a case report of "Mycobacterium avium SSTI (skin and soft tissue infection) and OM (osteomyelitis) with possible secondary immunodeficiency syndrome induced by anti-interferon-γ autoantibody".


Subject(s)
Interferon-gamma/immunology , Mycobacterium Infections, Nontuberculous/drug therapy , Mycobacterium avium/pathogenicity , Osteomyelitis/etiology , Soft Tissue Infections/drug therapy , Adult , Amoxicillin-Potassium Clavulanate Combination/therapeutic use , Anti-Bacterial Agents/therapeutic use , Autoantibodies , Clarithromycin/therapeutic use , Ethambutol/therapeutic use , Female , Granuloma/microbiology , Granuloma/surgery , Humans , Microbial Sensitivity Tests , Mycobacterium Infections, Nontuberculous/microbiology , Mycobacterium avium/drug effects , Mycobacterium avium/genetics , Osteomyelitis/immunology , Osteomyelitis/therapy , Scalp/pathology , Soft Tissue Infections/microbiology
14.
Sci Total Environ ; 650(Pt 2): 2657-2665, 2019 Feb 10.
Article in English | MEDLINE | ID: mdl-30296773

ABSTRACT

Vegetation restoration was implemented to control soil erosion in the karst regions of southwest China. It is essential to assess the soil function and quality scientifically during this process and to adopt suitable management practices for this area. However, few studies have been conducted to comprehensively evaluate the effect of vegetation restoration on soil quality in this severely eroded karst area. By taking 302 soil samples from 11 vegetation types, this study investigated the influence of different types of vegetation restoration on soil quality using an integrated soil quality index (SQI) and a generalized linear model (GLM). Vegetation types had significant effects on soil properties and thus on soil quality. SQI was developed by using TN, TP, TK, AP, and clay content; TN had highest weighting values (0.58), which indicated that it contributed the most to final SQI. The highest and lowest SQI values were observed for primary forest and cropland, respectively. Overall, vegetation restoration (e.g., natural restoration, artificial forests and artificial grassland) improved soil quality significantly. A GLM model explained 73.20% of the total variation in SQI, and vegetation type explained the largest proportion (46.39%) of the variation, which implies that the vegetation restoration practices can greatly enhance the soil quality in karst landscapes of southwest China. The results of this study may be used to improve implication of ecological restoration and management in degraded regions.


Subject(s)
Ecosystem , Environmental Monitoring/methods , Environmental Restoration and Remediation , Plants , Soil/chemistry , China
15.
Front Pharmacol ; 10: 1700, 2019.
Article in English | MEDLINE | ID: mdl-32082174

ABSTRACT

Although the functions of long noncoding RNA (lncRNA) called FOXD2 adjacent opposite strand RNA 1 (FOXD2-AS1) have been well studied in multiple human cancer types, its expression status and detailed roles in cervical cancer remain unknown and merit investigation. This study was aimed at assessing FOXD2-AS1 expression in cervical cancer and at determining its effects on the aggressive behavior of cervical cancer in vitro and in vivo. Expression of FOXD2-AS1 in cervical cancer tissues and cell lines was determined via reverse-transcription quantitative PCR. The effects of FOXD2-AS1 on cervical cancer cells were examined by a 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT) assay, flow-cytometric analysis, migration and invasion assays, and an in vivo tumorigenicity assay. FOXD2-AS1 was found to be significantly upregulated in cervical cancer tissues and cell lines. High FOXD2-AS1 expression was notably linked with the Federation of Gynecology and Obstetrics (FIGO) stage, lymph node metastasis, and depth of cervical invasion in patients with cervical cancer. Kaplan-Meier survival analysis revealed significantly shorter overall survival of patients when the tumor expression of FOXD2-AS1 was higher in comparison with those in patients with lower FOXD2-AS1 expression. In vitro functional assays revealed that downregulation of FOXD2-AS1 led to suppression of proliferation, migration, and invasiveness as well as to the induction of apoptosis of cervical cancer cells. In addition, FOXD2-AS1 silencing hindered tumor growth in vivo. Mechanism investigation revealed that FOXD2-AS1 functioned as a molecular sponge of microRNA-760 (miR-760). Furthermore, hepatoma-derived growth factor (HDGF) was validated as a direct target gene of miR-760 in cervical cancer cells. Moreover, an miR-760 knockdown reversed the effects of FOXD2-AS1 silencing on cervical cancer cells. FOXD2-AS1 possesses significant oncogenic activity in cervical cancer progression; this activity is mediated by sponging of miR-760 with consequent upregulation of HDGF. The FOXD2-AS1-miR-760-HDGF axis might harbor promising targets for novel treatment strategies of cervical cancer.

16.
Sci Rep ; 5: 15997, 2015 Nov 03.
Article in English | MEDLINE | ID: mdl-26525117

ABSTRACT

To test whether there are general patterns in biomass partitioning in relation to environmental variation when stand biomass is considered, we investigated biomass allocation in leaves, stems, and roots in China's forests using both the national forest inventory data (2004-2008) and our field measurements (2011-2012). Distribution patterns of leaf, stem, and root biomass showed significantly different trends according to latitude, longitude, and altitude, and were positively and significantly correlated with stand age and mean annual precipitation. Trade-offs among leaves, stems, and roots varied with forest type and origin and were mainly explained by stand biomass. Based on the constraints of stand biomass, biomass allocation was also influenced by forest type, origin, stand age, stand density, mean annual temperature, precipitation, and maximum temperature in the growing season. Therefore, after stand biomass was accounted for, the residual variation in biomass allocation could be partially explained by stand characteristics and environmental factors, which may aid in quantifying carbon cycling in forest ecosystems and assessing the impacts of climate change on forest carbon dynamics in China.


Subject(s)
Biomass , Forests , Plants/metabolism , China , Plant Leaves/chemistry , Plant Leaves/metabolism , Plant Roots/chemistry , Plant Roots/metabolism , Plant Stems/chemistry , Plant Stems/metabolism , Plants/chemistry , Principal Component Analysis , Regression Analysis
17.
Environ Manage ; 53(5): 959-67, 2014 May.
Article in English | MEDLINE | ID: mdl-24643296

ABSTRACT

Dissolved organic carbon (DOC) concentrations have increased in many sites in Europe and North America in recent decades. High DOC concentrations can damage the structure and functions of aquatic ecosystems by influencing water chemistry. This study investigated the spatial and seasonal variation of DOC concentrations in Irish streams across 55 sites at seven time occasions over 1 year (2006/2007). The DOC concentrations ranged from 0.9 to 25.9 mg/L with a mean value of 6.8 and a median value of 5.7 mg/L and varied significantly over the course of the year. The DOC concentrations from late winter (February: 5.2 ± 3.0 mg/L across 55 sites) and early spring (April: 4.5 ± 3.5 mg/L) had significantly lower DOC concentrations than autumn (October: mean 8.3 ± 5.6 mg/L) and early winter (December: 8.3 ± 5.1 mg/L). The DOC production sources (e.g., litterfall) or the accumulation of DOC over dry periods might be the driving factor of seasonal change in Irish stream DOC concentrations. Analysis of data using stepwise multiple linear regression techniques identified the topographic index (TI, an indication of saturation-excess runoff potential) and soil conditions (organic carbon content and soil drainage characteristics) as key factors in controlling DOC spatial variation in different seasons. The TI and soil carbon content (e.g., soil organic carbon; peat occurrence) are positively related to DOC concentrations, while well-drained soils are negatively related to DOC concentrations. The knowledge of spatial and seasonal variation of DOC concentrations in streams and their drivers are essential for optimum riverine water resources management.


Subject(s)
Carbon/analysis , Environmental Monitoring/statistics & numerical data , Rivers/chemistry , Water Pollutants, Chemical/analysis , Analysis of Variance , Climate , Environmental Monitoring/methods , Geography , Ireland , Linear Models , Seasons , Soil/chemistry
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