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1.
DNA Seq ; 17(2): 122-8, 2006 Apr.
Article in English | MEDLINE | ID: mdl-17076254

ABSTRACT

An amphioxus cDNA, AmphiGM2AP, encoding GM2 activator protein was isolated from the gut cDNA library of Branchiostoma belcheri. It is 907 bp long, and its longest open reading frame codes for a precursor protein consisting of 242 amino acid residues with a signal peptide of 14 amino acids. The deduced amino acid sequence includes a conserved domain typical of GM2APs between residues 53 and 224, a single N-linked glycosylation site at position 65 and 8 conserved cysteines. Phylogenetic analysis showed that amphiGM2AP forms a club together with invertebrate GM2APs, indicating that AmphiGM2AP is evolutionarily closely related to invertebrate GM2APs rather than vertebrate ones. Both Northern blotting and in situ hybridization histochemistry analyses revealed a tissue-specific expression pattern of AmphiGM2AP in adult amphioxus with the strongest expression in the digestive system, which is in contrast to the widespread expression pattern of human, mouse and sheep GM2AP genes. It is suggested that AmphiGM2AP is possibly involved in the take-in of digested food components like lipid molecules.


Subject(s)
Chordata, Nonvertebrate/genetics , G(M2) Activator Protein/genetics , Gene Expression Regulation , Amino Acid Sequence , Animals , Base Sequence , G(M2) Activator Protein/chemistry , Gene Expression Profiling , Gene Library , Molecular Sequence Data , Sequence Alignment
2.
Acta Biochim Biophys Sin (Shanghai) ; 38(8): 549-55, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16894477

ABSTRACT

UreG genes have been found in bacteria, fungi and plants but have not yet identified in animals, although a putative UreG-like gene has been documented in sea urchin. In the course of a large-scale sequencing of amphioxus gut cDNA library, we have identified a cDNA with high similarity to UreG genes. Both reverse transcription-polymerase chain reaction and nested polymerase chain reaction, as well as in situ hybridization histochemistry, verified that the cDNA represented an amphioxus UreG gene (AmphiUreG) rather than a microbial contaminant of the cDNA library. This is further supported by the presence of urease activity in amphioxus gut, gill and ovary. AmphiUreG encodes a deduced protein of 200 amino acid residues including a highly conserved P-loop, bearing approximately 46%-49%, 44%-48%, and 29%-37% similarity to fungal, plant and bacterial UreG proteins, respectively. It shows a tissue-specific expression pattern in amphioxus, and is especially abundant in the digestive system. This is the first UreG gene identified in animal species.


Subject(s)
Carrier Proteins/genetics , Chordata, Nonvertebrate/genetics , Amino Acid Sequence , Animals , Base Sequence , Carrier Proteins/classification , Carrier Proteins/metabolism , Chordata, Nonvertebrate/enzymology , Chordata, Nonvertebrate/metabolism , Gene Expression , Molecular Sequence Data , Phylogeny , Polymerase Chain Reaction , RNA, Messenger/analysis , Sequence Alignment , Tissue Distribution , Urease/metabolism
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