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1.
Cell Death Discov ; 9(1): 166, 2023 May 15.
Article in English | MEDLINE | ID: mdl-37188749

ABSTRACT

Dedicator of cytokinesis 3 (DOCK3) is an atypical member of the guanine nucleotide exchange factors (GEFs) and plays important roles in neurite outgrowth. DOCK3 forms a complex with Engulfment and cell motility protein 1 (Elmo1) and effectively activates Rac1 and actin dynamics. In this study, we screened 462,169 low-molecular-weight compounds and identified the hit compounds that stimulate the interaction between DOCK3 and Elmo1, and neurite outgrowth in vitro. Some of the derivatives from the hit compound stimulated neuroprotection and axon regeneration in a mouse model of optic nerve injury. Our findings suggest that the low-molecular-weight DOCK3 activators could be a potential therapeutic candidate for treating axonal injury and neurodegenerative diseases including glaucoma.

3.
Phys Rev Lett ; 123(3): 036404, 2019 Jul 19.
Article in English | MEDLINE | ID: mdl-31386467

ABSTRACT

We have probed the crystalline electric-field ground states of pure |J=7/2,J_{z}=±5/2⟩ as well as the anisotropic c-f hybridization in both valence fluctuating systems α- and ß-YbAlB_{4} by linear polarization dependence of angle-resolved core level photoemission spectroscopy. Interestingly, the small but distinct difference between α- and ß-YbAlB_{4} was found in the polar angle dependence of linear dichroism, indicating the difference in the anisotropy of c-f hybridization, which may be a key to understanding a heavy Fermi liquid state in α-YbAlB_{4} and a quantum critical state in ß-YbAlB_{4}.

4.
J Orthop Res ; 37(6): 1398-1408, 2019 06.
Article in English | MEDLINE | ID: mdl-30561041

ABSTRACT

Osteoarthritis is a major joint disease that has been extensively investigated in humans and in model animals. In this study, we examined the regeneration of articular cartilage and subchondral bone using artificial scaffold-free constructs composed of adipose tissue-derived mesenchymal stem cells (AT-MSCs) created using bio three-dimensional (3D) printing with a needle-array. Printed constructs were implanted into osteochondral defects created in the right femoral trochlear groove of six mini-pigs, using femoral defects created in the left femurs as controls. Repair within the defects was evaluated at 3 and 6 months post-implantation using computed tomography (CT) and magnetic resonance (MR) imaging. The radiolucent volume (RV, mm3 ) in the defects was calculated using multi-planar reconstruction of CT images. MR images were evaluated based on a modified 2D- MOCART (magnetic resonance observation of cartilage repair tissue) grading system. Gross and microscopic pathology were scored according to the ICRS (International Cartilage Repair Society) scale at 6 months after implantation. The percentage RV at 3 months postoperation was significantly lower in the implanted defects than in the controls, whereas total scores based on the MOCART system were significantly higher in the implanted defects as compared with the controls. Although there were no statistical differences in the gross scores, the average histological scores were significantly higher in the implanted defects than in the controls. To our knowledge, this is the first report to suggest that artificial scaffold-free 3D-printed constructs of autologous AT-MSCs can be aid in the osteochondral regeneration in pigs. © 2018 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 37:1398-1408, 2019.


Subject(s)
Adipose Tissue/cytology , Bone Regeneration , Cartilage, Articular/physiology , Mesenchymal Stem Cells/physiology , Printing, Three-Dimensional , Animals , Magnetic Resonance Imaging , Male , Swine , Swine, Miniature , Tissue Scaffolds , Tomography, X-Ray Computed
5.
Transl Vis Sci Technol ; 7(4): 21, 2018 Jul.
Article in English | MEDLINE | ID: mdl-30174998

ABSTRACT

PURPOSE: The short half lives of small molecules in the vitreous requires frequent repeated intravitreal injections that are impractical for treatment of chronic eye diseases. We sought to develop a method for increasing the intravitreal half-life of small-molecule drugs. METHODS: We adapted a technology for controlled release of drugs from macromolecular carriers for use as a long-acting intravitreal delivery system for small molecules. As a prototype, a small molecule complement factor D inhibitor with an intravitreal half-life of 7 hours was covalently attached to a 4-arm PEG40kDa by a self-cleaving ß-eliminative linker with a cleavage half-life of approximately 1 week. RESULTS: After intravitreal injection in rabbits, the drug was slowly released in the vitreous, and equilibrated with the retina and choroid. The intravitreal half-life of the intact PEG-drug conjugate in the rabbit was 7 days, and that of the released drug was 3.6 days. We simulated the anticipated pharmacokinetics of the delivery system in human vitreous, and estimated that the half-life of a 4-arm PEG40kDa conjugate would be approximately 2 weeks, and that of the released drug would be approximately 5 days. CONCLUSIONS: We posit that a linker with a cleavage half life of 2 weeks would confer a half life of approximately 7 days to a released small molecule drug in humans, comparable to the half life of approved intravitreal injected macromolecular drugs. TRANSLATIONAL RELEVANCE: With this technology, a potent small molecule with an appropriate therapeutic window should be administrable by intravitreal injections in the human at once-monthly intervals.

6.
Inorg Chem ; 57(16): 10214-10223, 2018 Aug 20.
Article in English | MEDLINE | ID: mdl-30088921

ABSTRACT

We study the new details of electronic and thermoelectric properties of polycrystalline layered oxychalcogenide systems of (BiO)Cu Ch ( Ch = Se, Te) prepared by using a solid-state reaction. The systems were characterized by using photoemission (PE) spectroscopy and four-probe temperature-dependent electrical resistivity ρ( T). PE spectra are explained by calculating the electronic properties using the generalized-gradient approximation method. PE spectra and ρ( T) show that (BiO)CuSe system is a semiconductor, while (BiO)CuTe system exhibits the metallic behavior that induces the high thermoelectric performance. The calculation of electronic properties of (BiO)Cu Ch ( Ch = S, Se, Te) confirms that the metallic behavior of (BiO)CuTe system is mainly induced by Te 5p states at Fermi energy level, while the indirect bandgaps of 0.68 and 0.40 eV are obtained for (BiO)CuS and (BiO)CuSe systems, respectively. It is also shown that the local symmetry distortion at Cu site strongly stimulates Cu 3d-t2g to be partially hybridized with Ch p orbitals. This study presents the essential properties of the inorganic systems for novel functional device applications.

7.
J Equine Sci ; 29(4): 117-122, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30607136

ABSTRACT

Synovium-derived mesenchymal stromal cells (SM-MSCs) from seven Thoroughbreds with naturally occurring intra-articular fracture proliferated to over ten million cells by the second passage. Using three experimental Thoroughbreds, columnar osteochondral defects were made arthroscopically at the bilateral distal radius. Five million allogenic SM-MSCs were implanted into the right defect, and another five million were injected into the right radio-carpal joint (implantation site). No SM-MSCs were implanted into the left defect or the same joint (control site). At 3 and 6 weeks after surgery, ten million autologous SM-MSCs were injected into the right joints. Radiolucent volumes of defects calculated by analysis of postmortem CT images 9 weeks after surgery were decreased in implanted sites compared with control sites in all horses. The average scores for ICRS gross and histopathological grading scales in implanted sites were equal to or higher than those of the controls. These results suggest that allogenic implantation and subsequent autologous injection of SM-MSCs might not obstruct subchondral bone formation in defects.

8.
Retin Cases Brief Rep ; 11(2): 156-159, 2017.
Article in English | MEDLINE | ID: mdl-27124794

ABSTRACT

PURPOSE: To report a case of unilateral retinal pigment epithelium dysgenesis. METHODS: An 8-year-old boy with a large grayish lesion and leopard-spot pattern lesion at its periphery in his left eye underwent fluorescein angiography, fundus autofluorescence imaging, optical coherence tomography, and electroretinography. RESULTS: Fluorescein angiography showed an area of geographic hyperfluorescence with a peripheral pattern of dark spots. The area of retinal pigment epithelial atrophy showed hypofluorescence on fundus autofluorescence. Optical coherence tomography of the left eye showed attenuation of the inner segment-outer segment junction and choroidal thinning. Single-flash electroretinography and scotopic electroretinography showed normal results and did not differ between both the eyes. The 30-Hz flicker test and photopic electroretinography showed a decrease in amplitude in the left eye. CONCLUSION: Unilateral retinal pigment epithelium dysgenesis is very rare, and its prognosis is still unknown. Careful follow-up of the patient seems to be essential.


Subject(s)
Retinal Diseases/diagnosis , Retinal Pigment Epithelium/pathology , Atrophy , Child , Diagnosis, Differential , Humans , Male
9.
J Equine Sci ; 27(2): 57-65, 2016.
Article in English | MEDLINE | ID: mdl-27330399

ABSTRACT

Dedifferentiated fat (DFAT) cells have been shown to be multipotent, similar to mesenchymal stem cells (MSCs). In this study, we aimed to establish and characterize equine DFAT cells. Equine adipocytes were ceiling cultured, and then dedifferentiated into DFAT cells by the seventh day of culture. The number of DFAT cells was increased to over 10 million by the fourth passage. Flow cytometry of DFAT cells showed that the cells were strongly positive for CD44, CD90, and major histocompatibility complex (MHC) class I; moderately positive for CD11a/18, CD105, and MHC class II; and negative for CD34 and CD45. Moreover, DFAT cells were positive for the expression of sex determining region Y-box 2 as a marker of multipotency. Finally, we found that DFAT cells could differentiate into osteogenic, chondrogenic, and adipogenic lineages under specific nutrient conditions. Thus, DFAT cells could have clinical applications in tissue regeneration, similar to MSCs derived from adipose tissue.

10.
J Synchrotron Radiat ; 23(Pt 3): 735-42, 2016 05.
Article in English | MEDLINE | ID: mdl-27140153

ABSTRACT

An angle-resolved linearly polarized hard X-ray photoemission spectroscopy (HAXPES) system has been developed to study the ground-state symmetry of strongly correlated materials. The linear polarization of the incoming X-ray beam is switched by a transmission-type phase retarder composed of two diamond (100) crystals. The best value of the degree of linear polarization was found to be -0.96, containing a vertical polarization component of 98%. A newly developed low-temperature two-axis manipulator enables easy polar and azimuthal rotations to select the detection direction of photoelectrons. The lowest temperature achieved was 9 K, offering the chance to access the ground state even for strongly correlated electron systems in cubic symmetry. A co-axial sample monitoring system with long-working-distance microscope enables the same region on the sample surface to be measured before and after rotation. Combining this sample monitoring system with a micro-focused X-ray beam by means of an ellipsoidal Kirkpatrick-Baez mirror (25 µm × 25 µm FWHM), polarized valence-band HAXPES has been performed on NiO for voltage application as resistive random access memory to demonstrate the micro-positioning technique and polarization switching.

11.
J Neurochem ; 132(4): 418-28, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25421849

ABSTRACT

The mechanism by which extracellular molecules control serotonergic cell fate remains elusive. Recently, we showed that noggin, which inactivates bone morphogenetic proteins (BMPs), induces serotonergic differentiation of mouse embryonic (ES) and induced pluripotent stem cells with coordinated gene expression along the serotonergic lineage. Here, we created a rapid assay for serotonergic induction by generating knock-in ES cells expressing a naturally secreted Gaussia luciferase driven by the enhancer of Pet-1/Fev, a landmark of serotonergic differentiation. Using these cells, we performed candidate-based screening and identified BMP type I receptor kinase inhibitors LDN-193189 and DMH1 as activators of luciferase. LDN-193189 induced ES cells to express the genes encoding Pet-1, tryptophan hydroxylase 2, and the serotonin transporter, and increased serotonin release without altering dopamine release. In contrast, TGF-ß receptor inhibitor SB-431542 selectively inhibited serotonergic differentiation, without changing overall neuronal differentiation. LDN-193189 inhibited expression of the BMP signaling target gene Id, and induced the TGF-ß target gene Lefty, whereas the opposite effect was observed with SB-431542. This study thus provides a new tool to investigate serotonergic differentiation and suggests that inhibition of BMP type I receptors and concomitant activation of TGF-ß receptor signaling are implicated in serotonergic differentiation. Candidate-based screening for serotonergic induction using a rapid assay in mouse embryonic stem cells revealed that the bone morphogenetic protein (BMP) type I receptor kinase inhibitors selectively induce serotonergic differentiation, whereas the TGF-ß receptor inhibitor SB-431542 inhibits the differentiation. These results suggest that inhibition of BMP type I receptors and concomitant activation of transforming growth factor-ß (TGF-ß) receptor signaling are involved in the early trajectory of serotonergic differentiation.


Subject(s)
Bone Morphogenetic Protein Receptors, Type I/physiology , Cell Differentiation/physiology , Embryonic Stem Cells/physiology , Receptors, Transforming Growth Factor beta/physiology , Serotonergic Neurons/physiology , Animals , Benzamides/pharmacology , Bone Morphogenetic Protein Receptors, Type I/antagonists & inhibitors , Cell Culture Techniques/methods , Cell Differentiation/drug effects , Cells, Cultured , Dioxoles/pharmacology , Embryonic Stem Cells/drug effects , Gene Knock-In Techniques/methods , Mice , Pyrazoles/pharmacology , Pyrimidines/pharmacology , Receptors, Transforming Growth Factor beta/antagonists & inhibitors , Serotonergic Neurons/drug effects , Signal Transduction/drug effects , Signal Transduction/physiology , Time Factors
12.
Retina ; 35(2): 344-50, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25289657

ABSTRACT

PURPOSE: To determine the relationships between the levels of intraocular inflammatory cytokines and the clinical characteristics of myopic choroidal neovascularization (mCNV) in eyes with myopic maculopathy. METHODS: One hundred eyes of 100 cases, including 51 mCNV eyes, 14 highly myopic eyes without choroidal neovascularization, and 35 normal subjects, were studied. The intraocular levels of choroidal neovascularization-related cytokines, like vascular endothelial growth factor, MCP-1, IL-8, IL-10, and IL-23, were determined. RESULTS: The levels of vascular endothelial growth factor and IL-8 were significantly higher in eyes with mCNV than in high myopia eyes without mCNV with significant odds ratio of 2.00 and 2.25 per quartile, respectively (P < 0.05). When myopic lesions of patients with mCNV were classified into 3 categories based on the severity, IL-8 and MCP-1 were significantly elevated depending on the presence of maculopathy (P < 0.05). Vascular endothelial growth factor was significantly elevated in eyes of Category 2. An advancement of the maculopathy category was significantly associated with the need for multiple treatment of intravitreal bevacizumab (P < 0.05). In 12 eyes that required multiple intravitreal bevacizumab, the MCP-1 level was significantly elevated. CONCLUSION: The significant associations of mCNV in highly myopic eyes with elevated levels of vascular endothelial growth factor or inflammatory cytokines and maculopathy lesions strongly suggest an involvement of inflammation in the etiology of mCNVs.


Subject(s)
Aqueous Humor/metabolism , Choroidal Neovascularization/metabolism , Cytokines/metabolism , Myopia, Degenerative/metabolism , Aged , Angiogenesis Inhibitors/therapeutic use , Antibodies, Monoclonal, Humanized/therapeutic use , Bevacizumab , Choroidal Neovascularization/diagnosis , Choroidal Neovascularization/drug therapy , Enzyme-Linked Immunosorbent Assay , Female , Humans , Intravitreal Injections , Male , Middle Aged , Myopia, Degenerative/diagnosis , Vascular Endothelial Growth Factor A/antagonists & inhibitors
14.
Drug Metab Dispos ; 42(3): 326-33, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24319124

ABSTRACT

(2R,3R,4R)-4-hydroxy-2-(hydroxymethyl)pyrrolidin-3-yl 4-O-(6-deoxy-ß-D-glucopyranosyl)-α-D-glucopyranoside (CS-1036), which is an α-amylase inhibitor, exhibited biphasic and sustained elimination with a long t1/2 (18.4-30.0 hours) in rats and monkeys, but exhibited a short t1/2 (3.7-7.9 hours) in humans. To clarify the species differences in the t1/2, the plasma protein binding of CS-1036 was evaluated by ultrafiltration. A concentration-dependent and saturable plasma protein binding of CS-1036 was observed in rats and monkeys with the dissociation rate constant (KD) of 8.95 and 27.2 nM, and maximal binding capacity (Bmax) of 52.8 and 22.1 nM, respectively. By the assessments of the recombinant amylase and immunoprecipitation, the major binding protein of CS-1036 in rats was identified as salivary amylase (KD 5.64 nM). CS-1036 also showed concentration-dependent and saturable binding to human salivary and pancreatic amylase, with similar binding affinity in rats. However, the protein binding of CS-1036 was constant in human plasma (≤10.2%) due to the lower serum amylase level compared with rats and monkeys. From the calculation of the unbound fraction (fu) in plasma based on in vitro KD and Bmax, the dose-dependent increase in fu after oral administration is speculated to lead to a dose-dependent increase in total body clearance and a high area under the curve/dose at lower doses, such as 0.3 mg/kg in rats.


Subject(s)
Blood Proteins/metabolism , Disaccharides/pharmacology , Enzyme Inhibitors/pharmacology , Pancreatic alpha-Amylases/antagonists & inhibitors , Pyrrolidines/pharmacology , Salivary alpha-Amylases/antagonists & inhibitors , Adult , Animals , Disaccharides/blood , Dose-Response Relationship, Drug , Double-Blind Method , Enzyme Inhibitors/blood , Escherichia coli/genetics , Humans , Immunoprecipitation , Macaca fascicularis , Male , Pancreatic alpha-Amylases/blood , Pancreatic alpha-Amylases/genetics , Protein Binding , Pyrrolidines/blood , Rats , Rats, Inbred F344 , Rats, Sprague-Dawley , Recombinant Proteins , Salivary alpha-Amylases/blood , Salivary alpha-Amylases/genetics , Species Specificity , Ultrafiltration , Young Adult
15.
Invest Ophthalmol Vis Sci ; 53(7): 3424-30, 2012 Jun 05.
Article in English | MEDLINE | ID: mdl-22531705

ABSTRACT

PURPOSE: To determine the relationship between the levels of intraocular inflammatory cytokines and polypoidal choroidal vasculopathy (PCV). METHODS: Prospective cohort study. Sixty-two patients with PCV and 36 control subjects were studied. The levels of cytokines, chemokines, and growth factors in the aqueous humor samples from PCV patients and control subjects were assessed for significant associations with PCV. Logistic regression analysis was used to compute the odds ratios (ORs) and 95% confidence intervals (CIs) after the study populations were divided into quartiles. RESULTS: In PCV patients, IL-4, IL-10, and IL-23 were significantly higher than in the controls. Logistic analyses showed a significantly high risk for IL-23 (OR for the highest quartile compared with the lowest quartile: 16.3; 95% CI: 3.5-75.2), VEGF (5.7; 1.2-26.1), and IL-4 (4.0; 1.3-12.7). IL-10 and IL-4, but not IL-23, were significantly correlated with the VEGF levels in PCV patients (IL-10: ρ = 0.477, IL-4: ρ = 0.281). The elevated levels of IL-5, IL-10, IL-4, IL-23, and IL-1α were found to be significantly associated with exudative lesion(s) in the fluorescein angiograms. CONCLUSIONS: The significant associations between elevated levels of IL-23 with PCV and its activity strongly suggest an involvement of inflammatory processes in the etiology of PCV, presumably independent of VEGF. (www.umin.ac.jp/ctr number, UMIN000003854.).


Subject(s)
Choroid/blood supply , Choroidal Neovascularization/metabolism , Interleukin-23/metabolism , Aged , Biomarkers/metabolism , Choroid/metabolism , Choroidal Neovascularization/pathology , Enzyme-Linked Immunosorbent Assay , Fluorescein Angiography , Fundus Oculi , Humans , Prospective Studies , Severity of Illness Index
16.
J Neurochem ; 122(1): 81-93, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22404309

ABSTRACT

We have developed a new simple method to induce serotonergic neurons from embryonic stem (ES) and induced pluripotent stem cells. When ES or induced pluripotent stem cells were cultured on a thick gel layer of Matrigel, most colonies extended TuJ1-positive neurites. We found that noggin, a known antagonist of bone morphogenic protein, induces ES cells to express genes involved in serotonergic differentiation, such as Nkx2.2, Pet-1, Sonic hedgehog, tryptophan hydroxylase 2, and serotonin transporter, as well as increases high potassium-induced release of serotonin. To concentrate serotonergic neurons, ES cells carrying Pet-1-enhancer-driven enhanced green fluorescent protein were differentiated and sorted into about 80% pure cultures of serotonergic neurons. Whole cell voltage-clamp recordings showed a voltage-dependent current in dissociated neurons. This simplified method provides an alternative option for serotonergic differentiation of pluripotent stem cells and will likely contribute a deeper understanding regarding the nature of serotonergic neurons and open new therapeutic perspectives for the treatment of psychiatric disorders.


Subject(s)
Embryonic Stem Cells/physiology , Induced Pluripotent Stem Cells/physiology , Serotonergic Neurons/physiology , Animals , Bone Morphogenetic Protein 4/pharmacology , Carrier Proteins/metabolism , Carrier Proteins/pharmacology , Cell Differentiation/physiology , Cell Line , Collagen/metabolism , Dose-Response Relationship, Drug , Drug Combinations , Electric Stimulation , Embryo, Mammalian , Flow Cytometry , Green Fluorescent Proteins/genetics , Hippocampus/cytology , Homeobox Protein Nkx-2.2 , Laminin/metabolism , Mice , Organ Culture Techniques , Proteins/genetics , Proteins/metabolism , Proteoglycans/metabolism , RNA, Messenger/metabolism , RNA, Untranslated , Serotonin/metabolism , Transcription Factors/genetics , Transduction, Genetic , Tubulin/metabolism , Tyrosine 3-Monooxygenase/metabolism
17.
Invest Ophthalmol Vis Sci ; 52(6): 2982-8, 2011 May 06.
Article in English | MEDLINE | ID: mdl-21273540

ABSTRACT

PURPOSE: To characterize the differential expression of intraocular inflammatory cytokines in eyes with branch retinal vein occlusion (BRVO) and to assess their roles as prognostic determinants of BRVO. METHODS: A prospective cohort study of 38 eyes with BRVO. Aqueous humor samples were collected just before the intravitreal injection of bevacizumab and were assessed for 18 cytokines, chemokines, and growth factors. For control, aqueous humor was collected from 28 eyes before cataract surgery. RESULTS: In the aqueous of eyes with BRVO, the IL-23, IL-8, IL-6, IL-15, IL-12, and IL-17 levels were significantly higher than that in control eyes. Pretreatment visual acuity was significantly correlated with the concentrations of IL-8, IL-10, IL-2, IL-1ß, IL-5, IL-6, IL-23, IL-4, MCP-1, IL-1α, IL-12, IL-13, IFN-γ, and IL-15. The pretreatment nonperfused area (NPA) was significantly correlated with the concentrations of IL-8, IL-2, MCP-1, and IL-6. Logistic regression analyses revealed significant associations between the BRVO and the concentrations of IL-8, IL-23, IL-12, IL-15, IL-10, IL-1ß, and IL-13. IL-8 had the highest odds ratio (OR) and was significantly associated with NPA, central retinal thickness (CRT), and visual acuity. Bevacizumab treatment significantly improved visual acuity and CRT after 1 month. Refractoriness to bevacizumab (defined as CRT recovery 1 month after treatment by <90%) was significantly associated with the IL-12 level. CONCLUSIONS: Of the induced cytokines in eyes with BRVO, IL-8 was the most significantly associated with the disease parameters of BRVO. IL-12 is most likely a factor that blocks the effect of bevacizumab treatment. (www.umin.ac.jp/ctr number, UMIN000003854.).


Subject(s)
Angiogenesis Inhibitors/administration & dosage , Antibodies, Monoclonal/administration & dosage , Aqueous Humor/metabolism , Cytokines/metabolism , Retinal Vein Occlusion/drug therapy , Retinal Vein Occlusion/metabolism , Aged , Antibodies, Monoclonal, Humanized , Bevacizumab , Fluorescein Angiography , Humans , Intravitreal Injections , Multivariate Analysis , Odds Ratio , Ophthalmoscopy , Prospective Studies , Retinal Vein Occlusion/diagnosis , Tomography, Optical Coherence , Vascular Endothelial Growth Factor A/antagonists & inhibitors , Visual Acuity/physiology
18.
Invest Ophthalmol Vis Sci ; 48(8): 3566-75, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17652725

ABSTRACT

PURPOSE: To identify the genes that can differentiate primary from recurrent pterygia. METHODS: The transcriptional differences of primary and recurrent pterygia were first determined by microarray analyses. Computational analyses were used to extract the biological significance of the genes accurately, and a significant functional classification of the genes was made by unsupervised methodologies. After confirming the functional classification for primary and recurrent pterygia by a clustering algorithm, a support vector machine (SVM) algorithm was applied. Based on a machine learning technique, the minimum number of genes that can accurately classify primary and recurrent pterygia was determined. RESULTS: Clustering analyses classified primary and recurrent pterygia transcriptomes and identified 10 clusters associated with distinct biological processes. When the SVM algorithm was applied to the microarray-analyzed products from three primary and three recurrent cases, periostin, TIMP-2, and L-3-phosphoserine phosphatase homolog (PSPHL) were identified as the minimum set of predictors with 100% accuracy. A differential expression of these genes in primary and recurrent pterygia was confirmed by immunohistochemistry. When the 24 patients with primary disease and the 8 patients with recurrent disease were analyzed with this gene set, an accuracy of classification of 84.38% was achieved. CONCLUSIONS: Periostin, TIMP-2, and PSPHL can be used as predictor genes for the recurrence of pterygia. Their biological activities may explain the events leading to recurrences of pterygia and thus may be genes to target for pharmaceutical interventions.


Subject(s)
Cell Adhesion Molecules/genetics , Genetic Markers , Genomics , Phosphoric Monoester Hydrolases/genetics , Pterygium/genetics , Tissue Inhibitor of Metalloproteinase-2/genetics , Aged , Algorithms , Cluster Analysis , Female , Genome, Human , Humans , Male , Middle Aged , Oligonucleotide Array Sequence Analysis , Predictive Value of Tests , Prognosis , Pterygium/diagnosis , Recurrence
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