Ocular A-to-I RNA editing signatures associated with SARS-CoV-2 infection.

Ophthalmic manifestations have recently been observed in acute and post-acute complications of COVID-19 caused by SARS-CoV-2 infection. Our precious study has shown that host RNA editing is linked to RNA viral infection, yet ocular adenosine to inosine (A-to-I) RNA editing during SARS-CoV-2 infection remains uninvestigated in COVID-19. Herein we used an epitranscriptomic pipeline to analyze 37 samples and investigate A-to-I editing associated with SARS-CoV-2 infection, in five ocular tissue types including the conjunctiva, limbus, cornea, sclera, and retinal organoids. Our results revealed dramatically altered A-to-I RNA editing across the five ocular tissues. Notably, the transcriptome-wide average level of RNA editing was increased in the cornea but generally decreased in the other four ocular tissues. Functional enrichment analysis showed that differential RNA editing (DRE) was mainly in genes related to ubiquitin-dependent protein catabolic process, transcriptional regulation, and RNA splicing. In addition to tissue-specific RNA editing found in each tissue, common RNA editing was observed across different tissues, especially in the innate antiviral immune gene MAVS and the E3 ubiquitin-protein ligase MDM2. Analysis in retinal organoids further revealed highly dynamic RNA editing alterations over time during SARS-CoV-2 infection. Our study thus suggested the potential role played by RNA editing in ophthalmic manifestations of COVID-19, and highlighted its potential transcriptome impact, especially on innate immunity.

Nonsequential double ionization of alkaline-earth metal atoms by intense mid-infrared femtosecond pulses.

A systematic study of nonsequential double ionization (NSDI) of alkaline-earth metal atoms with mid-infrared femtosecond pulses is reported. We find that the measured NSDI yield shows a strong target dependence and it is more suppressed for alkaline-earth metal with higher ionization potential. The observation is attributed to the differences in the recollision induced excitation and ionization cross sections of alkaline-earth metals. This work indicates that NSDI of alkaline-earth metals can be generally understood within recollision picture and sheds light on ultrafast control of electron correlation and dynamics of ionic excited states during NSDI of atoms with complex structures.