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1.
Sci Rep ; 14(1): 9077, 2024 Apr 20.
Article in English | MEDLINE | ID: mdl-38643206

ABSTRACT

Due to theintricate and interdependent nature of the smart grid, it has encountered an increasing number of security threats in recent years. Currently, conventional security measures such as firewalls, intrusion detection, and malicious detection technologies offer specific protection based on their unique perspectives. However, as the types and concealment of attacksincrease, these measures struggle to detect them promptly and respond accordingly. In order to meet the social demand for the accuracy and computation speed of the power network security risk evaluation model, the study develops a fusion power network security risk evaluation algorithm by fusing the flash search algorithm with the support vector machine. This algorithm is then used as the foundation for building an improved power network security risk evaluation model based on the fusion algorithm.The study's improved algorithm's accuracy is 96.2%, which is higher than the accuracy of the other comparative algorithms; its error rate is 3.8%, which is lower than the error rate of the other comparative algorithms; and its loss function curve convergence is quicker than that of the other algorithms.The risk evaluation model's accuracy is 97.8%, which is higher than the accuracy of other comparative models; the error rate is 1.9%, which is lower than the error rate of other comparative models; the computing time of the improved power network security risk evaluation model is 4.4 s, which is lower than the computing time of other comparative models; and its expert score is high. These findings are supported by empirical analysis of the improved power network security risk evaluation model proposed in the study. According to the study's findings, the fusion algorithm and the upgraded power network security risk evaluation model outperform other approaches in terms of accuracy and processing speed. This allows the study's maintenance staff to better meet the needs of the community by assisting them in identifying potential security hazards early on and taking the necessary preventative and remedial action to ensure the power system's continued safe operation.

2.
J Vis Exp ; (199)2023 09 29.
Article in English | MEDLINE | ID: mdl-37843272

ABSTRACT

Solute carriers (SLCs) are membrane transporters that import and export a range of endogenous and exogenous substrates, including ions, nutrients, metabolites, neurotransmitters, and pharmaceuticals. Despite having emerged as attractive therapeutic targets and markers of disease, this group of proteins is still relatively underdrugged by current pharmaceuticals. Drug discovery projects for these transporters are impeded by limited structural, functional, and physiological knowledge, ultimately due to the difficulties in the expression and purification of this class of membrane-embedded proteins. Here, we demonstrate methods to obtain high-purity, milligram quantities of human SLC transporter proteins using codon-optimized gene sequences. In conjunction with a systematic exploration of construct design and high-throughput expression, these protocols ensure the preservation of the structural integrity and biochemical activity of the target proteins. We also highlight critical steps in the eukaryotic cell expression, affinity purification, and size-exclusion chromatography of these proteins. Ultimately, this workflow yields pure, functionally active, and stable protein preparations suitable for high-resolution structure determination, transport studies, small-molecule engagement assays, and high-throughput in vitro screening.


Subject(s)
Membrane Transport Proteins , Solute Carrier Proteins , Humans , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism , Solute Carrier Proteins/chemistry , Solute Carrier Proteins/metabolism , Drug Discovery/methods , High-Throughput Screening Assays , Membrane Proteins/metabolism , Pharmaceutical Preparations
3.
Sensors (Basel) ; 21(18)2021 Sep 12.
Article in English | MEDLINE | ID: mdl-34577330

ABSTRACT

The significant wave height (SWH) of oceans is the main parameter in describing the sea state, which has been widely used in the establishment of ocean process models and the field of navigation and transportation. However, traditional methods such as satellite radar altimeters and buoys cannot achieve SWH estimations with high spatial and temporal resolution. Recently, the spaceborne Global Navigation Satellite System reflectometry (GNSS-R) has provided an opportunity to estimate SWH with a rapid global coverage and high temporal resolution observations, particularly with the Cyclone Global Navigation Satellite System (CYGNSS) mission. In this paper, SWH was estimated using the polynomial function relationship between SWH from ERA5 and Delay-Doppler Map Average (DDMA) as well as Leading Edge Slope (LES) from CYGNSS data. Then, the SWH estimated from CYGNSS data was validated by ERA-Interim data, AVISO data, and buoy data. The results showed that the average correlation coefficient of CYGNSS SWH was 0.945, and the average RMSE was 0.257 m when compared to the ERA-Interim SWH data. The RMSE was 0.423 m and the correlation coefficient was 0.849 when compared with the AVISO SWH. The correlation coefficient with the buoy data was 0.907, and the RMSE was 0.247 m. This method can provide suitable SWH estimation data for ocean dynamics research and ocean environment prediction.


Subject(s)
Cyclonic Storms , Oceans and Seas , Radar
4.
Acta Crystallogr D Struct Biol ; 77(Pt 1): 62-74, 2021 Jan 01.
Article in English | MEDLINE | ID: mdl-33404526

ABSTRACT

Despite the tremendous success of X-ray cryo-crystallography in recent decades, the transfer of crystals from the drops in which they are grown to diffractometer sample mounts remains a manual process in almost all laboratories. Here, the Shifter, a motorized, interactive microscope stage that transforms the entire crystal-mounting workflow from a rate-limiting manual activity to a controllable, high-throughput semi-automated process, is described. By combining the visual acuity and fine motor skills of humans with targeted hardware and software automation, it was possible to transform the speed and robustness of crystal mounting. Control software, triggered by the operator, manoeuvres crystallization plates beneath a clear protective cover, allowing the complete removal of film seals and thereby eliminating the tedium of repetitive seal cutting. The software, either upon request or working from an imported list, controls motors to position crystal drops under a hole in the cover for human mounting at a microscope. The software automatically captures experimental annotations for uploading to the user's data repository, removing the need for manual documentation. The Shifter facilitates mounting rates of 100-240 crystals per hour in a more controlled process than manual mounting, which greatly extends the lifetime of the drops and thus allows a dramatic increase in the number of crystals retrievable from any given drop without loss of X-ray diffraction quality. In 2015, the first in a series of three Shifter devices was deployed as part of the XChem fragment-screening facility at Diamond Light Source, where they have since facilitated the mounting of over 120 000 crystals. The Shifter was engineered to have a simple design, providing a device that could be readily commercialized and widely adopted owing to its low cost. The versatile hardware design allows use beyond fragment screening and protein crystallography.


Subject(s)
Equipment Design , Microscopy , Proteins/chemistry , Software , Crystallization , Crystallography, X-Ray
5.
Cell Res ; 30(6): 551-552, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32284560

ABSTRACT

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

6.
Cell Res ; 27(8): 989-1001, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28731030

ABSTRACT

Phosphatidylinositol 3-phosphate (PI3P) plays essential roles in vesicular trafficking, organelle biogenesis and autophagy. Two class III phosphatidylinositol 3-kinase (PI3KC3) complexes have been identified in mammals, the ATG14L complex (PI3KC3-C1) and the UVRAG complex (PI3KC3-C2). PI3KC3-C1 is crucial for autophagosome biogenesis, and PI3KC3-C2 is involved in various membrane trafficking events. Here we report the cryo-EM structures of human PI3KC3-C1 and PI3KC3-C2 at sub-nanometer resolution. The two structures share a common L-shaped overall architecture with distinct features. EM examination revealed that PI3KC3-C1 "stands up" on lipid monolayers, with the ATG14L BATs domain and the VPS34 C-terminal domain (CTD) directly contacting the membrane. Biochemical dissection indicated that the ATG14L BATs domain is responsible for membrane anchoring, whereas the CTD of VPS34 determines the orientation. Furthermore, PI3KC3-C2 binds much more weakly than PI3KC3-C1 to both PI-containing liposomes and purified endoplasmic reticulum (ER) vesicles, a property that is specifically determined by the ATG14L BATs domain. The in vivo ER localization analysis indicated that the BATs domain was required for ER localization of PI3KC3. We propose that the different lipid binding capacity is the key factor that differentiates the functions of PI3KC3-C1 and PI3KC3-C2 in autophagy.


Subject(s)
Class II Phosphatidylinositol 3-Kinases/chemistry , Multienzyme Complexes/chemistry , Multienzyme Complexes/ultrastructure , Cryoelectron Microscopy , Humans , Protein Domains , Protein Structure, Quaternary
7.
Cell Res ; 26(7): 822-37, 2016 07.
Article in English | MEDLINE | ID: mdl-27174052

ABSTRACT

The eukaryotic multi-subunit RNA exosome complex plays crucial roles in 3'-to-5' RNA processing and decay. Rrp6 and Ski7 are the major cofactors for the nuclear and cytoplasmic exosomes, respectively. In the cytoplasm, Ski7 helps the exosome to target mRNAs for degradation and turnover via a through-core pathway. However, the interaction between Ski7 and the exosome complex has remained unclear. The transaction of RNA substrates within the exosome is also elusive. In this work, we used single-particle cryo-electron microscopy to solve the structures of the Ski7-exosome complex in RNA-free and RNA-bound forms at resolutions of 4.2 Å and 5.8 Å, respectively. These structures reveal that the N-terminal domain of Ski7 adopts a structural arrangement and interacts with the exosome in a similar fashion to the C-terminal domain of nuclear Rrp6. Further structural analysis of exosomes with RNA substrates harboring 3' overhangs of different length suggests a switch mechanism of RNA-induced exosome activation in the through-core pathway of RNA processing.


Subject(s)
Cryoelectron Microscopy , Exosome Multienzyme Ribonuclease Complex/metabolism , Exosomes/metabolism , RNA/metabolism , Saccharomyces cerevisiae/metabolism , Adaptor Proteins, Signal Transducing/chemistry , Adaptor Proteins, Signal Transducing/metabolism , Amino Acid Sequence , Exosome Multienzyme Ribonuclease Complex/chemistry , Exosome Multienzyme Ribonuclease Complex/genetics , Exosomes/chemistry , Image Processing, Computer-Assisted , Models, Molecular , Mutagenesis , Nucleic Acid Conformation , Protein Binding , Protein Structure, Quaternary , RNA/chemistry , RNA-Binding Motifs , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism
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