ABSTRACT
Wireless sensor network (WSN) location is a significant research area. In complex environments like forests, inaccurate signal intensity ranging is a major challenge. To address this issue, this paper presents a reliable WSN distance measurement-positioning algorithm for forest environments. The algorithm divides the positioning area into several sub-regions based on the discrete coefficient of the collected signal strength. Then, using the fitting method based on the signal intensity value of each sub-region, the algorithm derives the reference points of the logarithmic distance path loss model and path loss index. Finally, the algorithm locates target nodes using anchor nodes in different regions. Additionally, to enhance the positioning accuracy, weight values are assigned to the positioning result based on the discrete coefficient of the signal intensity in each sub-region. Experimental results demonstrate that the proposed WSN algorithm has high precision in forest environments.
ABSTRACT
Blurry scenarios, such as light reflections and water ripples, often affect the clarity and signal-to-noise ratio of fish images, posing significant challenges for traditional deep learning models in accurately recognizing fish species. Firstly, deep learning models rely on a large amount of labeled data. However, it is often difficult to label data in blurry scenarios. Secondly, existing deep learning models need to be more effective for the processing of bad, blurry, and otherwise inadequate images, which is an essential reason for their low recognition rate. A method based on the diffusion model and attention mechanism for fish image recognition in blurry scenarios, DiffusionFR, is proposed to solve these problems and improve the performance of species recognition of fish images in blurry scenarios. This paper presents the selection and application of this correcting technique. In the method, DiffusionFR, a two-stage diffusion network model, TSD, is designed to deblur bad, blurry, and otherwise inadequate fish scene pictures to restore clarity, and a learnable attention module, LAM, is intended to improve the accuracy of fish recognition. In addition, a new dataset of fish images in blurry scenarios, BlurryFish, was constructed and used to validate the effectiveness of DiffusionFR, combining bad, blurry, and otherwise inadequate images from the publicly available dataset Fish4Knowledge. The experimental results demonstrate that DiffusionFR achieves outstanding performance on various datasets. On the original dataset, DiffusionFR achieved the highest training accuracy of 97.55%, as well as a Top-1 accuracy test score of 92.02% and a Top-5 accuracy test score of 95.17%. Furthermore, on nine datasets with light reflection noise, the mean values of training accuracy reached a peak at 96.50%, while the mean values of the Top-1 accuracy test and Top-5 accuracy test were at their highest at 90.96% and 94.12%, respectively. Similarly, on three datasets with water ripple noise, the mean values of training accuracy reached a peak at 95.00%, while the mean values of the Top-1 accuracy test and Top-5 accuracy test were at their highest at 89.54% and 92.73%, respectively. These results demonstrate that the method showcases superior accuracy and enhanced robustness in handling original datasets and datasets with light reflection and water ripple noise.
ABSTRACT
Colorectal cancer (CRC) ranks among the most prevalent global malignancies, posing significant threats to human life and health due to its high recurrence and metastatic potential. Small extracellular vesicles (sEVs) released by CRC play a pivotal role in the formation of the pre-metastatic niche (PMN) through various mechanisms, preparing the groundwork for accelerated metastatic invasion. This review systematically describes how sEVs promote CRC metastasis by upregulating inflammatory factors, promoting immunosuppression, enhancing angiogenesis and vascular permeability, promoting lymphangiogenesis and lymphatic network remodeling, determining organophilicity, promoting stromal cell activation and remodeling and inducing the epithelial-to-mesenchymal transition (EMT). Furthermore, we explore potential mechanisms by which sEVs contribute to PMN formation in CRC and propose novel insights for CRC diagnosis, treatment, and prognosis.
Subject(s)
Colorectal Neoplasms , Epithelial-Mesenchymal Transition , Extracellular Vesicles , Tumor Microenvironment , Humans , Extracellular Vesicles/metabolism , Colorectal Neoplasms/pathology , Colorectal Neoplasms/metabolism , Animals , Neoplasm Metastasis , Neovascularization, Pathologic/metabolism , Neovascularization, Pathologic/pathology , LymphangiogenesisABSTRACT
Plant phenotypic traits play an important role in understanding plant growth dynamics and complex genetic traits. In phenotyping, the segmentation of plant organs, such as leaves and stems, helps in automatically monitoring growth and improving screening efficiency for large-scale genetic breeding. In this paper, we propose an AC-UNet stem and leaf segmentation algorithm based on an improved UNet. This algorithm aims to address the issues of feature edge information loss and sample breakage in the segmentation of plant organs, specifically in Betula luminifera. The method replaces the backbone feature extraction network of UNet with VGG16 to reduce the redundancy of network information. It adds a multi-scale mechanism in the splicing part, an optimized hollow space pyramid pooling module, and a cross-attention mechanism in the expanding network part at the output end to obtain deeper feature information. Additionally, Dice_Boundary is introduced as a loss function in the back-end of the algorithm to circumvent the sample distribution imbalance problem. The PSPNet model achieves mIoU of 58.76%, mPA of 73.24%, and Precision of 66.90%, the DeepLabV3 model achieves mIoU of 82.13%, mPA of 91.47%, and Precision of 87.73%, on the data set. The traditional UNet model achieves mIoU of 84.45%, mPA of 91.11%, and Precision of 90.63%, and the Swin-UNet model achieves . The mIoU is 79.02%, mPA is 85.99%, and Precision is 88.73%. The AC-UNet proposed in this article achieved excellent performance on the Swin-UNet dataset, with mIoU, mPA, and Precision of 87.50%, 92.71%, and 93.69% respectively, which are better than the selected PSPNet, DeepLabV3, traditional UNet, and Swin-UNet. Commonly used semantic segmentation algorithms. Experiments show that the algorithm in this paper can not only achieve efficient segmentation of the stem and leaves of Betula luminifera but also outperforms the existing state-of-the-art algorithms in terms of both speed. This can provide more accurate auxiliary support for the subsequent acquisition of plant phenotypic traits.
ABSTRACT
Birds play a vital role in maintaining biodiversity. Accurate identification of bird species is essential for conducting biodiversity surveys. However, fine-grained image recognition of birds encounters challenges due to large within-class differences and small inter-class differences. To solve this problem, our study took a part-based approach, dividing the identification task into two parts: part detection and identification classification. We proposed an improved bird part detection algorithm based on YOLOv5, which can handle partial overlap and complex environmental conditions between part objects. The backbone network incorporates the Res2Net-CBAM module to enhance the receptive fields of each network layer, strengthen the channel characteristics, and improve the sensitivity of the model to important information. Additionally, in order to boost data on features extraction and channel self-regulation, we have integrated CBAM attention mechanisms into the neck. The success rate of our suggested model, according to experimental findings, is 86.6%, 1.2% greater than the accuracy of the original model. Furthermore, when compared with other algorithms, our model's accuracy shows noticeable improvement. These results show how useful the method we suggested is for quickly and precisely recognizing different bird species.
Subject(s)
Algorithms , Recognition, Psychology , Biodiversity , NeckABSTRACT
Neurodegenerative diseases, such as Alzheimer's disease, Parkinson's disease, amyotrophic lateral sclerosis, and Huntington's disease, affect millions of people worldwide. Tremendous efforts have been put into disease-related research, but few breakthroughs have been made in diagnostic and therapeutic approaches. Extracellular vesicles (EVs) are heterogeneous cell-derived membrane structures that arise from the endosomal system or are directly separated from the plasma membrane. EVs contain many biomolecules, including proteins, nucleic acids, and lipids, which can be transferred between different cells, tissues, or organs, thereby regulating cross-organ communication between cells during normal and pathological processes. Recently, EVs have been shown to participate in various aspects of neurodegenerative diseases. Abnormal secretion and levels of EVs are closely related to the pathogenesis of neurodegenerative diseases and contribute to disease progression. Numerous studies have proposed EVs as therapeutic targets or biomarkers for neurodegenerative diseases. In this review, we summarize and discuss the advanced research progress on EVs in the pathological processes of several neurodegenerative diseases. Moreover, we outline the latest research on the roles of EVs in neurodegenerative diseases and their therapeutic potential for the diseases.
Subject(s)
Alzheimer Disease , Amyotrophic Lateral Sclerosis , Extracellular Vesicles , Neurodegenerative Diseases , Parkinson Disease , Humans , Neurodegenerative Diseases/diagnosis , Neurodegenerative Diseases/therapyABSTRACT
Small extracellular vesicles (sEVs) derived from tissue can reflect the functional status of the source cells and the characteristics of the tissue's interstitial space. The efficient enrichment of these sEVs is an important prerequisite to the study of their biological function and a key to the development of clinical detection techniques and therapeutic carrier technology. It is difficult to isolate sEVs from tissue because they are usually heavily contaminated. This study provides a method for the rapid enrichment of high-quality sEVs from liver cancer tissue. The method involves a four-step process: the incubation of digestive enzymes (collagenase D and DNase Ι) with tissue, filtration through a 70 µm cell strainer, differential ultracentrifugation, and filtration through a 0.22 µm membrane filter. Owing to the optimization of the differential ultracentrifugation step and the addition of a filtration step, the purity of the sEVs obtained by this method is higher than that achieved by classic differential ultracentrifugation. It provides an important methodology and supporting data for the study of tissue-derived sEVs.
Subject(s)
Extracellular Vesicles , Liver Neoplasms , Humans , Deoxyribonuclease I , DeoxyribonucleasesABSTRACT
BACKGROUND: The preservation of platelets (PLTs) by room temperature (RT) oscillation limits their shelf life to between 4 and 7 days because of the decrease in PLT function. TRPC6 is a non-selective mechanically sensitive cation channel that has been shown to mediate Ca2+ signalling, implying a role in PLT activation during preservation by RT oscillation. OBJECTIVES: This study was designed to investigate whether inhibition of TRPC6 can improve the RT preservation of PLTs and the possible underlying mechanism. METHODS: Human PLTs from whole blood were stored at 22 ± 2°C with oscillation in plasma or M-sol (mixture of solutions). BI-749327, a specific TRPC6 inhibitor, was administered throughout the preservation period. PLT distribution width (PDW), mean platelet volume (MPV), maximum platelet aggregation rate (MAR) and average aggregation rate (AAR) were measured. The MTT method was used to assess the relative viability of PLTs. Flow cytometry was used to measure the changes of Ca2+ concentration in PLTs and phosphatidylserine (PS) exposure on the PLT surface, and western blotting was used to assess the expression changes of platelet TRPC6 and CD62P proteins. RESULTS: Compared with the control group, inhibition of TRPC6 with BI-749327 significantly reduced the PDW, MPV and Ca2+ concentration, the MAR and AAR were significantly increased, the expression of TRPC6 and CD62P protein was significantly down-regulated in PLTs, and the PS exposure was significantly reduced on the PLT surface. However, these effects were all reversed by activation of TRPC6. CONCLUSION: Inhibition of TRPC6 improves the quality of PLT preservation by inhibiting the Ca2+ signal mediated by TRPC6.
Subject(s)
Blood Platelets , Platelet Aggregation , Humans , TRPC6 Cation Channel/metabolism , Blood Platelets/metabolism , Plasma , Blood Preservation/methodsABSTRACT
Colorectal cancer (CRC) is a malignancy that seriously threatens human health, and metastasis from CRC is a major cause of death and poor prognosis for patients. Studying the potential mechanisms of small extracellular vesicles (sEVs) in tumor development may provide new options for early and effective diagnosis and treatment of CRC metastasis. In this review, we systematically describe how sEVs mediate epithelial mesenchymal transition (EMT), reconfigure the tumor microenvironment (TME), modulate the immune system, and alter vascular permeability and angiogenesis to promote CRC metastasis. We also discuss the current difficulties in studying sEVs and propose new ideas.
Subject(s)
Colorectal Neoplasms , Extracellular Vesicles , Humans , Colorectal Neoplasms/pathology , Extracellular Vesicles/pathology , Tumor MicroenvironmentABSTRACT
The semantic segmentation of apples from images plays an important role in the automation of the apple industry. However, existing semantic segmentation methods such as FCN and UNet have the disadvantages of a low speed and accuracy for the segmentation of apple images with complex backgrounds or rotten parts. In view of these problems, a network segmentation model based on deep learning, DeepMDSCBA, is proposed in this paper. The model is based on the DeepLabV3+ structure, and a lightweight MobileNet module is used in the encoder for the extraction of features, which can reduce the amount of parameter calculations and the memory requirements. Instead of ordinary convolution, depthwise separable convolution is used in DeepMDSCBA to reduce the number of parameters to improve the calculation speed. In the feature extraction module and the cavity space pyramid pooling module of DeepMDSCBA, a Convolutional Block Attention module is added to filter background information in order to reduce the loss of the edge detail information of apples in images, improve the accuracy of feature extraction, and effectively reduce the loss of feature details and deep information. This paper also explored the effects of rot degree, rot position, apple variety, and background complexity on the semantic segmentation performance of apple images, and then it verified the robustness of the method. The experimental results showed that the PA of this model could reach 95.3% and the MIoU could reach 87.1%, which were improved by 3.4% and 3.1% compared with DeepLabV3+, respectively, and superior to those of other semantic segmentation networks such as UNet and PSPNet. In addition, the DeepMDSCBA model proposed in this paper was shown to have a better performance than the other considered methods under different factors such as the degree or position of rotten parts, apple varieties, and complex backgrounds.
ABSTRACT
Breast cancer (BC) is the most common malignancy and the leading cause of cancer-related deaths in women worldwide. Currently, patients' survival remains a challenge in BC due to the lack of effective targeted therapies and the difficult condition of patients with higher aggressiveness, metastasis and drug resistance. Small extracellular vesicles (sEVs), which are nanoscale vesicles with lipid bilayer envelopes released by various cell types in physiological and pathological conditions, play an important role in biological information transfer between cells. There is growing evidence that BC cell-derived sEVs may contribute to the establishment of a favorable microenvironment that supports cancer cells proliferation, invasion and metastasis. Moreover, sEVs provide a versatile platform not only for the diagnosis but also as a delivery vehicle for drugs. This review provides an overview of current new developments regarding the involvement of sEVs in BC pathogenesis, including tumor proliferation, invasion, metastasis, immune evasion, and drug resistance. In addition, sEVs act as messenger carriers carrying a variety of biomolecules such as proteins, nucleic acids, lipids and metabolites, making them as potential liquid biopsy biomarkers for BC diagnosis and prognosis. We also described the clinical applications of BC derived sEVs associated MiRs in the diagnosis and treatment of BC along with ongoing clinical trials which will assist future scientific endeavors in a more organized direction.
ABSTRACT
Ground-object classification using remote-sensing images of high resolution is widely used in land planning, ecological monitoring, and resource protection. Traditional image segmentation technology has poor effect on complex scenes in high-resolution remote-sensing images. In the field of deep learning, some deep neural networks are being applied to high-resolution remote-sensing image segmentation. The DeeplabV3+ network is a deep neural network based on encoder-decoder architecture, which is commonly used to segment images with high precision. However, the segmentation accuracy of high-resolution remote-sensing images is poor, the number of network parameters is large, and the cost of training network is high. Therefore, this paper improves the DeeplabV3+ network. Firstly, MobileNetV2 network was used as the backbone feature-extraction network, and an attention-mechanism module was added after the feature-extraction module and the ASPP module to introduce focal loss balance. Our design has the following advantages: it enhances the ability of network to extract image features; it reduces network training costs; and it achieves better semantic segmentation accuracy. Experiments on high-resolution remote-sensing image datasets show that the mIou of the proposed method on WHDLD datasets is 64.76%, 4.24% higher than traditional DeeplabV3+ network mIou, and the mIou on CCF BDCI datasets is 64.58%. This is 5.35% higher than traditional DeeplabV3+ network mIou and outperforms traditional DeeplabV3+, U-NET, PSP-NET and MACU-net networks.
Subject(s)
Image Processing, Computer-Assisted , Remote Sensing Technology , Attention , Image Processing, Computer-Assisted/methods , Neural Networks, Computer , Remote Sensing Technology/methodsABSTRACT
Exosomes are a heterogeneous subset of extracellular vesicles (EVs) that biogenesis from endosomes. Besides, exosomes contain a variety of molecular cargoes including proteins, lipids and nucleic acids, which play a key role in the mechanism of exosome formation. Meanwhile, exosomes are involved with physiological and pathological conditions. The molecular profile of exosomes reflects the type and pathophysiological status of the originating cells so could potentially be exploited for diagnostic of cancer. This review aims to describe important molecular cargoes involved in exosome biogenesis. In addition, we highlight exogenous factors, especially autophagy, hypoxia and pharmacology, that regulate the release of exosomes and their corresponding cargoes. Particularly, we also emphasize exosome molecular cargoes as potential biomarkers in liquid biopsy for diagnosis of cancer.
ABSTRACT
Semantic segmentation of standing trees is important to obtain factors of standing trees from images automatically and effectively. Aiming at the accurate segmentation of multiple standing trees in complex backgrounds, some traditional methods have shortcomings such as low segmentation accuracy and manual intervention. To achieve accurate segmentation of standing tree images effectively, SEMD, a lightweight network segmentation model based on deep learning, is proposed in this article. DeepLabV3+ is chosen as the base framework to perform multi-scale fusion of the convolutional features of the standing trees in images, so as to reduce the loss of image edge details during the standing tree segmentation and reduce the loss of feature information. MobileNet, a lightweight network, is integrated into the backbone network to reduce the computational complexity. Furthermore, SENet, an attention mechanism, is added to obtain the feature information efficiently and suppress the generation of useless feature information. The extensive experimental results show that using the SEMD model the MIoU of the semantic segmentation of standing tree images of different varieties and categories under simple and complex backgrounds reaches 91.78% and 86.90%, respectively. The lightweight network segmentation model SEMD based on deep learning proposed in this paper can solve the problem of multiple standing trees segmentation with high accuracy.
Subject(s)
Deep Learning , Image Processing, Computer-Assisted , Forests , Image Processing, Computer-Assisted/methods , Semantics , TreesABSTRACT
A potential use of small extracellular vesicles (sEVs) for diagnostic and therapeutic purposes has recently generated a great interest. sEVs, when purified directly from various tissues with proper procedures, can reflect the physiological and pathological state of the organism. However, the quality of sEV is affected by many factors during isolation, including separation of sEV from cell and tissues debris, the use of enzymes for tissue digestion, and the storage state of tissues. In the present study, we established an assay for the isolation and purification of liver cancer tissues-derived sEVs (tdsEVs) and cultured explants-derived sEVs (cedsEVs) by comparing the quality of sEVs derived from different concentration of digestion enzyme and incubation time. The nano-flow cytometry (NanoFCM) showed that the isolated tdsEVs by our method are purer than those obtained from differential ultracentrifugation. Our study thus establishes a simple and effective approach for isolation of high-quality sEVs that can be used for analysis of their constituents.
Subject(s)
Extracellular Vesicles , Liver Neoplasms , Extracellular Vesicles/pathology , Humans , Liver Neoplasms/pathologyABSTRACT
Double pollution with phosphorus (P) losses and potential lead (Pb) accumulation in rice fields could lead to eutrophication and crop toxicity, respectively, and affect people's health. To promote the sustainable and environmentally friendly development of agriculture, we conducted field experiments using a randomized block design to explore P losses, Pb accumulation and any potential association between P and Pb forms in rice-duck (RD) co-culture system and rice monoculture (RM) system combined with different fertilizers applied: the no fertilizer (RD and RM), chemical fertilizer (RDF and RMF), organic fertilizer (RDO and RMO), and a mixture of 70% chemical and 30% organic fertilizers (RDFO and RMFO) treatments with consistent P inputs. The results showed that RDFO had the best advantages in reducing the losses of TP (total phosphorous) (by 6.67%) and DRP (dissolved reactive phosphate) (32.72%) as well as the contents of available Pb (by 7.57%) and the accumulation of Pb in grains (26.32%) compared with RMF. RDFO also achieved the highest grain yield, reaching 10.97 t ha-1, and exhibited a lower soil weak-acid-extracted Pb (readily be taken up by plants) concentration than RDF and RMF. RDO resulted in greater TP leaching (increase by 10.62%) and lower DRP leaching (decrease by 36.57%) than RMF. It also exhibited the lowest concentration of weak-acid-extracted Pb and higher the concentration of grain Pb than that in other treatments. RDF reduced TP (by 5.33%) and DRP (by 16.36%) losses to a greater extent and the concentration of available and grain Pb were respectively 6.58% and 25.57% lower than RMF. Therefore, RDFO was the most recommended agricultural system for the studied region. Furthermore, different soil Pb forms were correlated with different P forms of soil and leakage and runoff water, which depended mainly on the fertilizer type and specific soil redox environment in the rice fields. The ratio of organic to inorganic fertilizer, the choice of organic fertilizer type, the assessment and timing of the detection of potential farmland pollution risks and association between different forms of P and Pb are worthy of further discussion.
Subject(s)
Agriculture/methods , Ducks , Fertilizers , Lead/metabolism , Oryza , Phosphorus/analysis , Animals , China , Coculture Techniques , Eutrophication , Nitrogen/analysis , Phosphates , Soil/chemistryABSTRACT
Rice-frog cultivation is a traditional farming system in China and has been reintroduced as an agricultural practice in China in recent years. The microbial community in paddy rhizospheric soils has attracted much attention because many microorganisms participate in functional processes in soils. In this study, Illumina MiSeq sequencing-based techniques were used to investigate soil microbial communities and functional gene patterns across samples obtained by conventional rice cultivation (CR) and rice-frog cultivation (RF). The results showed that RF significantly affected the microbial community composition and richness, which indicated that the rhizospheric microorganisms responded to the introduction of tiger frogs into the paddy fields. Operational taxonomic units (OTUs) from Sandaracinaceae, Anaerolineaceae, Candidatus Nitrososphaera, Candidatus Nitrosotalea, Candidatus Nitrosoarchaeum and some unclassified OTUs from Euryarchaeota and Agaricomycetes were significantly enriched by RF. The abiotic parameters soil organic carbon (SOC), nitrate nitrogen (NO3 --N), and available phosphorus (AP) changed under RF treatment and played essential roles in establishing the soil bacterial, archaeal, and fungal compositions. Correlations between environmental factors and microbial communities were described using network analysis. SOC was strongly correlated with Anaerolineaceae, Methanosaeta, and Scutellinia. NO3 --N showed strong positive correlations with Opitutus, Geobacter, and Methanosaeta. NH4 ++-N was strongly positively associated with Sideroxydans, and TN was strongly positively correlated with Candidatus Nitrotoga. Compared to conventional CR, RF greatly enriched specific microbial taxa. These taxa may be involved in the decomposition of complex organic matter and the transformation of soil nutrients, thus promoting plant growth by improving nutrient cycling. The unique patterns of microbial taxonomic and functional composition in soil profiles suggested functional redundancy in these paddy soils. RF could significantly affect the bacterial, archaeal, and fungal communities though changing SOC and AP levels.
ABSTRACT
Nitrogen (N) leakage in paddy fields can cause groundwater pollution. In this study, we conducted a split-plot field experiment over 2â¯years to compare N leakage in a rice-duck co-culture system and a rice monoculture system with different fertilizer treatments. Four treatments were applied to each field, with consistent N inputs in each fertilizer treatment: no fertilizer (RD and RM, respectively), chemical fertilizer (RDF and RMF, respectively), organic fertilizer (RDO and RMO, respectively), and a mixture of 70% chemical and 30% organic fertilizers (RDFO and RMFO, respectively). In both years, rice-duck co-culture system had lower N leakage than the rice monoculture for the same fertilizer treatment, with average reductions of 14.3⯱â¯0.1%, 13.5⯱â¯4.5% and 10.5⯱â¯3.3% for RDFO, RDF and RDO, respectively. Within the rice-duck co-culture system, the average N leakage across both years was 36.3⯱â¯6.3% lower in RDO and 16.9⯱â¯11.5% lower in RDFO than in RMF. RDFO gave the highest grain yield compared with RDF and RDO, average reached 10.35â¯tâ¯ha-1 across both years. In conclusion, our results suggested that rice-duck co-culture reduces environmental risks by controlling N leakage and increasing agricultural productivity. Compared with other treatments in this research, RDFO was the most recommended agricultural production mode in this region because it can reduce the inputs of chemical fertilizer, control nitrogen leakage and increase rice yield.
Subject(s)
Agriculture/methods , Fertilizers , Nitrogen/analysis , Water Pollutants, Chemical/analysis , ChinaABSTRACT
Integrated rice-frog farming (IRFF), as a mode of ecological farming, is fundamental in realizing sustainable development in agriculture. Yet its production of greenhouse gas (GHG) emissions remains unclear. Here, a randomized plot field experiment was performed to study the GHG emissions for various farming systems during the rice growing season. The farming systems included: conventional farming (CF), green integrated rice-frog farming (GIRF), and organic integrated rice-frog farming (OIRF). Results indicate that the cumulative methane (CH4) emissions from the whole growth period were divergent for the three farming systems, with OIRF having the highest value and CF having the lowest. For nitrous oxide (N2O) emissions, the order is reversed. IRFF significantly increased the dissolved oxygen (DO), soil redox potential (Eh), total organic carbon (TOC) content, and soil C:N ratio, which is closely related to GHG emissions in rice fields. Additionally, the average emissions of carbon dioxide (CO2) from soils during rice growing seasons ranged from 2312.27 to 2589.62 kg ha-1 and showed no significant difference in the three treatments. Rice yield in the GIRF and OIRF were lower (2.0% and 16.7%) than the control. The CH4 emissions contributed to 83.0-96.8% of global warming potential (GWP). Compared to CF, the treatment of GIRF and OIRF increased the GWP by 41.3% and 98.2% during the whole growing period of rice, respectively. IRFF significantly increased greenhouse gas intensity (GHGI, 0.79 kg CO2-eq ha-1 grain yield), by 91.1% over the control. Compared to the OIRF, GIRF decreased the GHGI by approximately 39.4% (0.59 kg CO2-eq ha-1 grain yield), which was 44.2% higher than that of the control. The results of structural equation model showed that the contribution of fertilization to CH4 emissions in paddy fields was much greater than that of frog activity. Moreover, frog activity could decrease GWP by reducing CH4 emissions from rice fields. And while GIRF showed a slight increase in GHG emissions, it could still be considered as a good strategy for providing an environmentally-friendly option in maintaining crop yield in paddy fields.
Subject(s)
Agriculture/methods , Anura , Greenhouse Gases/analysis , Oryza , Animals , Carbon Dioxide/analysis , Methane/analysis , Nitrous Oxide/analysis , Random Allocation , Seasons , Soil/chemistryABSTRACT
Tuberculosis caused by Mycobacterium tuberculosis (M. tuberculosis) is the leading cause of death among infectious diseases in the worldwide. Lack of more sensitive and effective diagnostic reagents has increased the awareness of rapid diagnosis for tuberculosis. In this study, T7 phage displayed genomic DNA library of M. tuberculosis was constructed to screen the antigens that specially bind with TB-positive serum from the whole genome of M. tuberculosis and to improve the sensitivity and specificity of tuberculosis serological diagnosis. After three rounds of biopanning, results of DNA sequencing and BLAST analysis showed that 19 positive phages displayed four different proteins and the occurrence frequency of the phage which displayed ribokinase was the highest. The results of indirect ELISA and dot immunoblotting indicated that representative phages could specifically bind to tuberculosis-positive serum. The prokaryotic expression vector containing the DNA sequence of ribokinase gene was then constructed and the recombinant protein was expressed and purified to evaluate the serodiagnosis value of ribokinase. The reactivity of the recombinant ribokinase with different clinical serum was detected and the sensitivities and specificities in tuberculosis serodiagnosis were 90% and 86%, respectively by screening serum from tuberculosis patients (n = 90) and uninfected individuals (n = 90) based on ELISA. Therefore, this study demonstrated that ribokinase had good potential for the serodiagnosis of tuberculosis.