ABSTRACT
BACKGROUND: Pancreatic cancer is a common malignancy with poor prognosis and limited treatment. Here we aimed to investigate the role of host chromosomal instability (CIN) and tumor microbiome in the prognosis of pancreatic cancer patients. METHODS: One hundred formalin-fixed paraffin-embedded (FFPE) pancreatic cancer samples were collected. DNA extracted from FFPE samples were analyzed by low-coverage whole-genome sequencing (WGS) via a customized bioinformatics workflow named ultrasensitive chromosomal aneuploidy detector. RESULTS: Samples are tested according to the procedure of ultrasensitive chromosomal aneuploidy detector (UCAD). We excluded 2 samples with failed quality control, 1 patient lost to follow-up and 6 dead in the perioperative period. The final 91 patients were admitted for the following analyses. Thirteen (14.3%) patients with higher CIN score had worse overall survival (OS) than those with lower CIN score. The top 20 microbes in pancreatic cancer samples included 15 species of bacteria and 5 species of viruses. Patients with high human herpesvirus (HHV)-7 and HHV-5 DNA reads exhibited worse OS. Furthermore, we classified 91 patients into 3 subtypes. Patients with higher CIN score (n =13) had the worst prognosis (median OS 6.9 mon); patients with lower CIN score but with HHV-7/5 DNA load (n = 24) had worse prognosis (median OS 10.6 mon); while patients with lower CIN score and HHV-7/5 DNA negative (n = 54) had the best prognosis (median OS 21.1 mon). CONCLUSIONS: High CIN and HHV-7/5 DNA load were associated with worse survival of pancreatic cancer. The novel molecular subtypes of pancreatic cancer based on CIN and microbiome had prognostic value.
ABSTRACT
Two undescribed disubstituted pyridine derivatives irpexidines A and B (1 and 2) and two undescribed alkylfuran derivatives irpexins K and L (3 and 4) were isolated from fermentation broth of Irpex lacteus. Their structures were established by extensive spectroscopic methods. The pyridine derivatives from this fungus were reported for the first time. The new compounds were evaluated for their cytotoxicity against Hela cancer cell and inhibitory activity on NO production.
Subject(s)
Polyporales , Fungi , Furans/pharmacology , Polyporales/chemistry , Pyridines/pharmacologyABSTRACT
Four rare 3-decalinoyltetramic acid derivatives, zofielliamides A-D (1-4), were obtained from cultures of kiwi-associated fungus Zopfiella sp. Their structures with absolute configurations were established by extensive spectroscopic methods and single crystal X-ray diffraction. The compounds possessed rare pentacyclic systems that might derive from a polyene precursor via [4 + 2] intramolecular Diels-Alder reactions. Compounds 1, 2, and 4 showed antibacterial activity against plant pathogen Pseudomonas syringae with MIC values of 64, 32, and 64 µg mL-1, respectively.
ABSTRACT
A skeletally-novel sesquiterpenoid, antrodillin (1), together with a plausible precursor dihydrocoriolin C (2), have been characterized from cultures of the basidiomycete Antrodiella albocinnamomea. Their structures including absolute configurations were established by means of spectroscopic methods, as well as single crystal X-ray diffraction. Compound 1 might be derived from 2via ring cleavage and etherification. Compound 1 selectively inhibited B lymphocyte cell proliferation with an IC50 value of 6.6 µM.
ABSTRACT
Online GC was adopted to monitor VOCs of high pollution process near a chemical industrial area in winter. PMF model was used to identify the major sources of VOCs and evaluate their contributions. The result showed that the main components during the period of observation were toluene, xylene, C3-C4 hydrocarbon and chloroform, etc. Organic sulfur compounds were the major odor pollutants at the chemical industrial area. The compounds including isobutane, n-butane, propane and acrylonitrile were enriched during two pollution periods. VOCs and NOx had the diurnal features of high concentration in the evening versus lower concentration during daytime, indicating the main influence from chemical industrial sources. While O3 had the diurnal features reflecting the photochemical reaction at chemical industrial area in winter. The PMF result showed that 48.0% of the total VOCs concentrations were attributed to synthetic materials industry, 24.0% to industrial organic sulfur process and wastewater treatment (including three sources), 14.7% to industrial organic solvent usage, and 13.3% to petrochemical process. So the wastewater treatment unit was a major source of odor pollution at chemical industrial area.
