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1.
Cureus ; 15(7): e42110, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37476300

ABSTRACT

Background Ambulatory anorectal surgeries have increased in the last few years. This clinical study aimed to compare general operating room conditions with outpatient procedures for simple anal fistulas in terms of healing success, recurrence, cost, complications, and sustainability. Methodology Only primary fistulotomy and seton application for simple anal fistulas were retrospectively analyzed. Results Two-hundred fifty patients (73.7%) were male, and 89 (26.3%) were female. Sixty patients (17.7%) were treated in the operating room, and 279 (82.3%) were treated in the outpatient clinic conditions. Of the ambulatory surgeries, 160 patients underwent fistulotomy and 119 patients loose seton. On the other hand, 34 patients underwent fistulotomy and 26 patients loose seton in operating room conditions. No significant difference was found between the groups according to the distribution of age, gender, complications, and recurrence (P > 0.05). Cost-effectiveness assessment according to the place (ambulatory/operating room) and type of operation (fistulotomy/loose seton) reveals that ambulatory surgery provides significantly more savings (P < 0.001). Conclusions For simple anal fistulas, ambulatory anorectal surgery is a safe approach that can be performed at a lower cost than operating room conditions.

2.
Eur J Trauma Emerg Surg ; 49(4): 1783-1789, 2023 Aug.
Article in English | MEDLINE | ID: mdl-36609597

ABSTRACT

OBJECTIVE: Bezoars are foreign bodies developed due to the swallowing of indigestible substances in the stomach that accumulate in the lumen of the gastrointestinal tract. This study aimed to compare the location, size, and diameter of bezoars between patients with and without a history of previous gastrointestinal surgery and between operated and non-operated patients retrospectively. METHODS: A total of 188 patients who presented to our gastroenterology clinic and in whom bezoar was suspected on clinical examination and the diagnosis confirmed through abdominal CT scans were included in the study. The patients were divided into two groups; patients with a history of previous gastrointestinal surgery were assigned to Group 1 (n = 70), and those who had no history of previous surgery (n = 118) to Group 2. RESULTS: The mean age was found as 56.16 ± 15.75 years in Group 1 and 57.71 ± 15.95 years in Group 2. The mean bezoar width was significantly higher in Group 1 (p = 0.049). The mean bezoar length was significantly higher in Group 1 (p = 0.004). Considering localization of bezoars, the rate of patients who underwent enterotomy (80%) was statistically significantly higher than the patients who underwent gastrotomy (23.50%), gastrotomy + milking (28.60%) and milking (44.70%) in the operations performed in the jejunum. CONCLUSION: Bezoars are a rare cause of intestinal obstruction. The median width and length of the bezoars were significantly higher in patients with a history of previous gastric surgery. There was no significant difference in other parameters. The most common localization was jejunum.


Subject(s)
Bezoars , Digestive System Surgical Procedures , Intestinal Obstruction , Humans , Adult , Middle Aged , Aged , Bezoars/diagnostic imaging , Bezoars/surgery , Retrospective Studies , Stomach/diagnostic imaging , Stomach/surgery , Intestinal Obstruction/surgery
3.
Oncogene ; 42(9): 638-650, 2023 02.
Article in English | MEDLINE | ID: mdl-36550360

ABSTRACT

Transcriptional and translational control are key determinants of gene expression, however, to what extent these two processes can be collectively coordinated is still poorly understood. Here, we use Nanopore long-read sequencing and cap analysis of gene expression (CAGE-seq) to document the landscape of 5' and 3' untranslated region (UTR) isoforms and transcription start sites of epidermal stem cells, wild-type keratinocytes and squamous cell carcinomas. Focusing on squamous cell carcinomas, we show that a small cohort of genes with alternative 5'UTR isoforms exhibit overall increased translational efficiencies and are enriched in ribosomal proteins and splicing factors. By combining polysome fractionations and CAGE-seq, we further characterize two of these UTR isoform genes with identical coding sequences and demonstrate that the underlying transcription start site heterogeneity frequently results in 5' terminal oligopyrimidine (TOP) and pyrimidine-rich translational element (PRTE) motif switches to drive mTORC1-dependent translation of the mRNA. Genome-wide, we show that highly translated squamous cell carcinoma transcripts switch towards increased use of 5'TOP and PRTE motifs, have generally shorter 5'UTRs and expose decreased RNA secondary structures. Notably, we found that the two 5'TOP motif-containing, but not the TOP-less, RPL21 transcript isoforms strongly correlated with overall survival in human head and neck squamous cell carcinoma patients. Our findings warrant isoform-specific analyses in human cancer datasets and suggest that switching between 5'UTR isoforms is an elegant and simple way to alter protein synthesis rates, set their sensitivity to the mTORC1-dependent nutrient-sensing pathway and direct the translational potential of an mRNA by the precise 5'UTR sequence.


Subject(s)
Carcinoma, Squamous Cell , Humans , 5' Untranslated Regions , RNA, Messenger/genetics , Protein Isoforms/genetics , Carcinoma, Squamous Cell/genetics , Protein Biosynthesis
4.
Pol Przegl Chir ; 96(2): 38-43, 2023 Oct 13.
Article in English | MEDLINE | ID: mdl-38629278

ABSTRACT

<b><br>Indroduction:</b> Machine learning is a branch of artificial intelligence based on the idea that systems can learn from data, identify patterns, and make decisions with minimal human intervention.</br> <b><br>Aim:</b> Our aim is to predict acute appendicitis, which is the most common indication for emergency surgery, using machine learning algorithms with an easy and inexpensive method.</br> <b><br>Materials and methods:</b> Patients who were treated surgically with a prediagnosis of acute appendicitis in a single center between 2011 and 2021 were analyzed. Patients with right lower quadrant pain were selected. A total of 189 positive and 156 negative appendectomies were found. Gender and hemogram were used as features. Machine learning algorithms and data analysis were made in Python (3.7) programming language.</br> <b><br>Results:</b> Negative appendectomies were found in 62% (n = 97) of the women and in 38% (n = 59) of the men. Positive appendectomies were present in 38% (n = 72) of the women and 62% (n = 117) of the men. The accuracy in the test data was 82.7% in logistic regression, 68.9% in support vector machines, 78.1% in k-nearest neighbors, and 83.9% in neural networks. The accuracy in the voting classifier created with logistic regression, k-nearest neighbor, support vector machines, and artificial neural networks was 86.2%. In the voting classifier, the sensitivity was 83.7% and the specificity was 88.6%.</br> <b><br>Conclusions:</b> The results of our study show that machine learning is an effective method for diagnosing acute appendicitis. This study presents a practical, easy, fast, and inexpensive method to predict the diagnosis of acute appendicitis.</br>.


Subject(s)
Appendicitis , Male , Humans , Female , Appendicitis/diagnosis , Appendicitis/surgery , Artificial Intelligence , Machine Learning , Abdominal Pain , Acute Disease
5.
Pol Przegl Chir ; 94(4): 1-5, 2022 Jan 26.
Article in English | MEDLINE | ID: mdl-36047360

ABSTRACT

<b>Introduction:</b> While elective surgeries have been postponed worldwide due to the COVID-19 pandemic, emergency operations cannot be delayed and are continuously being performed just like before the pandemic outbreak [1]. </br></br> <b>Aim:</b> Although elective surgeries have been postponed worldwide due to the COVID-19 pandemic, emergency operations cannot be delayed and are continuously being performed. In general surgery practice, incarcerated / strangulated inguinal hernias take a prominent place among emergency surgeries. In 1% of these patients, the hernia contents retreat spontaneously into the abdomen until the hernia sac is opened. It is strongly recommended that these bowel segments be evaluated for possible intestinal necrosis.</br></br> <b>Results:</b> Patients who underwent emergency surgery and hernioscopy in the Sakarya Training and Research Hospital General Surgery Service due to incarcerated or strangulated inguinal hernia between March 2020 and October 2020 were included in the study. Hernioscopy procedure was performed using the single-port and glove-port methods. For each patient, the following variables were recorded: age, duration of complaints, comorbidities, hernia repair method, operation time, incarcerated organ, postoperative complications and whether ischemia improved after reduction or resection was required. </br></br> <b> Conclusion:</b> Hernioscopy is a procedure performed under spinal anesthesia which prevents unnecessary laparotomies and should be considered as first-line treatment during the COVID-19 pandemic in patients who undergo emergency surgery for strangulated inguinal hernia.


Subject(s)
COVID-19 , Hernia, Inguinal , Vascular Diseases , COVID-19/epidemiology , Groin/surgery , Hernia, Inguinal/complications , Hernia, Inguinal/surgery , Herniorrhaphy/methods , Humans , Pandemics
6.
Ulus Travma Acil Cerrahi Derg ; 27(6): 706-709, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34710232

ABSTRACT

Primary omental torsion (POT) is a rarely encountered clinical condition as an acute abdominal pathology. POT is more prevalent in males than females. The diagnosis of POT is challenging, and pregnancy initiates the diagnosis more difficult and essential. The fact that radiological methods such as computed tomography cannot be used during pregnancy constitutes the biggest problem in diagnosis. At this point, diagnostic laparoscopy plays a significant role in the diagnosis and treatment of acute abdominal pathologies in pregnant patients. The diagnosis of a 28-week pregnant woman who was admitted to our emergency department with the aggravation of abdominal pain was not clarified by abdominal ultrasound so the patient was diagnosed with POT by diagnostic laparoscopy. Conservative follow-up plays an important role in pregnant patients, and the poor progress of the patient in both laboratory and physical examination leads diagnostic laparoscopy to an important point when the limitation of imaging methods is added.


Subject(s)
Laparoscopy , Peritoneal Diseases , Abdominal Pain/etiology , Female , Humans , Male , Omentum/surgery , Peritoneal Diseases/diagnosis , Peritoneal Diseases/surgery , Pregnancy , Torsion Abnormality/diagnostic imaging , Torsion Abnormality/surgery , Ultrasonography
7.
Pol Przegl Chir ; 93(4): 15-20, 2021 Mar 16.
Article in English | MEDLINE | ID: mdl-34515652

ABSTRACT

<b> Objective: </b> Cecal diverticulitis may be encountered as a real etiological factor in 1/300 appendectomies. Differential diagnosis of acute appendicitis and cecal diverticulitis is crucial because of the different treatment methods. Our aim is to reveal the importance of distinguishing acute appendicitis from cecal diverticulitis. <p> <b>Methods: </b> The data of patients who were admitted to the hospital between 2015 and 2019 with the complaint of abdominal pain and then finally diagnosed with colon diverticular disease, colon diverticulitis, or acute appendicitis, analyzed retrospectively. <p><b>Results: </b> A total of 19 cecum diverticulitis patients were detected during surgery for acute appendicitis or during clinical and radiological evaluation. 1247 appendectomies were evaluated; the final diagnosis was observed as cecal diverticulitis in 5 patients (0,4%). One hundred nineteen patients diagnosed with colonic diverticulitis at admission were evaluated, while 105 (88,2%) of them had left-sided diverticulitis, 14 (11,7%) of them had solitary cecal diverticulitis. All of the solitary cecal diverticulitis patients were treated conservatively, except one patient who has Hinchey 3 diverticulitis.<p><b> Conclusion: </b> Differential diagnosis of cecum diverticulitis with acute appendicitis is important because cecum diverticulitis can be managed as conservatively in most cases. In order to prevent unnecessary surgical interventions, this importance has increased, especially during the COVID-19 pandemic period.


Subject(s)
Appendicitis , COVID-19 , Diverticulitis , Acute Disease , Appendectomy , Appendicitis/diagnosis , Appendicitis/surgery , Cecum , Diagnosis, Differential , Diverticulitis/diagnosis , Diverticulitis/surgery , Humans , Pandemics , Retrospective Studies , SARS-CoV-2
8.
Water Sci Technol ; 83(5): 1152-1166, 2021 Mar.
Article in English | MEDLINE | ID: mdl-33724944

ABSTRACT

Heavy metals become inevitable pollutants that are toxic to life. Lots of treatment methods are available; adsorption is a cheap option. Metals are mostly found as mixtures in wastewaters. Taking this into account, a natural composite adsorbent aims to remove multiple heavy metals (Pb2+, Cu2+, Cd2+). Alginate was combined with clinoptilolite to form alginate - clinoptilolite (A-C) beads. First, factors influencing the removal efficiency of metals were investigated. Then, continuous column experiments were performed to evaluate the real application potential of the adsorbent. A-C beads preferably adsorbed Pb2+. Batch experiments showed metal uptake reached equilibrium after 24 hours and kinetics were compatible with the first-order. Also, pH values near neutral levels were observed to increase heavy metal removal. On the other hand, adsorption equilibrium was well described by the Langmuir model for Cu2+ and Cd2+ and by the Freundlich model for Pb2+. The highest heavy metal uptake was calculated as 2,145 mg /g A-C beads for Pb2+. Continuous column operations were suggested to apply low flow rates (<2 mL/min) and heavy metal concentration (<10 mg/L) for effectiveness. A-C beads can be a good candidate for mixed heavy metal removal composed of environmentally friendly and low-cost materials.


Subject(s)
Metals, Heavy , Water Pollutants, Chemical , Zeolites , Adsorption , Hydrogen-Ion Concentration , Kinetics , Polymers , Water Pollutants, Chemical/analysis
10.
Nat Commun ; 11(1): 5972, 2020 11 24.
Article in English | MEDLINE | ID: mdl-33235224

ABSTRACT

Genome-wide DNA demethylation is a unique feature of mammalian development and naïve pluripotent stem cells. Here, we describe a recently evolved pathway in which global hypomethylation is achieved by the coupling of active and passive demethylation. TET activity is required, albeit indirectly, for global demethylation, which mostly occurs at sites devoid of TET binding. Instead, TET-mediated active demethylation is locus-specific and necessary for activating a subset of genes, including the naïve pluripotency and germline marker Dppa3 (Stella, Pgc7). DPPA3 in turn drives large-scale passive demethylation by directly binding and displacing UHRF1 from chromatin, thereby inhibiting maintenance DNA methylation. Although unique to mammals, we show that DPPA3 alone is capable of inducing global DNA demethylation in non-mammalian species (Xenopus and medaka) despite their evolutionary divergence from mammals more than 300 million years ago. Our findings suggest that the evolution of Dppa3 facilitated the emergence of global DNA demethylation in mammals.


Subject(s)
Chromatin/metabolism , Chromosomal Proteins, Non-Histone , DNA Demethylation , Mammals/genetics , Pluripotent Stem Cells/metabolism , Animals , Biological Evolution , CCAAT-Enhancer-Binding Proteins/metabolism , Chromosomal Proteins, Non-Histone/genetics , Chromosomal Proteins, Non-Histone/metabolism , DNA Methylation , DNA-Directed DNA Polymerase/metabolism , Epigenomics , Evolution, Molecular , Gene Expression Regulation , Genes, Regulator , Germ Cells/metabolism , Mice , Ubiquitin-Protein Ligases/metabolism
11.
World J Emerg Surg ; 15(1): 34, 2020 05 18.
Article in English | MEDLINE | ID: mdl-32423408

ABSTRACT

BACKGROUND: Acute appendicitis is the most common non-gynecological emergency during pregnancy. The diagnosis of appendicitis during pregnancy is challenging due to changes in both physiological and laboratory variables. Guidelines suggest patients with suspected acute appendicitis should be stratified based on clinical scoring systems, to optimize the use of diagnostic imaging and prevent unnecessary surgery. Surgeons require additional information beyond that provided by imaging studies before deciding upon exploratory laparoscopy in patients with a high suspicion of appendicitis. Various scoring methods have been evaluated for the diagnosis of acute appendicitis. However, there is no consensus on a method to use during pregnancy, and a detailed comparison of existing scoring methods for this purpose has not yet been conducted. The purpose of this study was to evaluate the efficacy of the most popular scoring systems applied to diagnose acute appendicitis during pregnancy. METHODS: This single-center retrospective study included 79 pregnant patients who were admitted to the emergency department with abdominal pain between May 2014 and May 2019. The patients were diagnosed with acute appendicitis and underwent an appendectomy. As a control group, the study also included 79 non-pregnant patients who underwent appendectomy within the last 1.5 years. To ensure that the groups were similar, women in the case group were stratified according to age, and the proportions of women in the strata were determined. The women in the control group were similarly stratified. Women were randomly selected from the strata to prevent bias. Both laboratory and examination findings required for each scoring method were obtained and assessed separately for each patient. Negative appendectomy rates were evaluated according to pathology results. Categorical variables were compared using the chi-square test. A p value < 0.05 was considered to indicate significance. Receiver operator characteristic curve analysis was used to identify the best threshold value and to assess the performance of the test scores in terms of diagnosing appendicitis. RESULTS: Among all scoring systems, the Tzanakis score was most efficacious at predicting appendicitis in non-pregnant women. The positive predictive value (PPV) of the Tzanakis score was 90.6%, whereas the negative predictive value (NPV) was 46.7%. The RIPASA score performed the best among the scoring systems in pregnant women. It was associated with a PPV of 94.40%, NPV of 44%, and sensitivity and specificity of 78.46% and 78.57%, respectively. CONCLUSION: Although the RIPASA score can be used to efficaciously diagnose acute appendicitis in pregnant women, a specific scoring system is needed for diagnosis during the gestation period.


Subject(s)
Appendicitis/diagnosis , Pregnancy Complications, Infectious/diagnosis , Adult , Appendectomy/methods , Appendicitis/surgery , Case-Control Studies , Emergency Service, Hospital , Female , Humans , Pregnancy , Pregnancy Complications, Infectious/surgery , Retrospective Studies , Turkey
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