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1.
Nat Commun ; 15(1): 3032, 2024 Apr 08.
Article in English | MEDLINE | ID: mdl-38589417

ABSTRACT

Type 1 pili are important virulence factors of uropathogenic Escherichia coli that mediate bacterial attachment to epithelial cells in the urinary tract. The pilus rod is comprised of thousands of copies of the main structural subunit FimA and is assembled in vivo by the assembly platform FimD. Although type 1 pilus rods can self-assemble from FimA in vitro, this reaction is slower and produces structures with lower kinetic stability against denaturants compared to in vivo-assembled rods. Our study reveals that FimD-catalysed in vitro-assembled type 1 pilus rods attain a similar stability as pilus rods assembled in vivo. Employing structural, biophysical and biochemical analyses, we show that in vitro assembly reactions lacking FimD produce pilus rods with structural defects, reducing their stability against dissociation. Overall, our results indicate that FimD is not only required for the catalysis of pilus assembly, but also to control the assembly of the most stable quaternary structure.


Subject(s)
Escherichia coli Proteins , Fimbriae Proteins , Fimbriae Proteins/genetics , Fimbriae Proteins/chemistry , Escherichia coli Proteins/chemistry , Escherichia coli/genetics , Fimbriae, Bacterial/chemistry
2.
Sci Adv ; 10(6): eadj6358, 2024 Feb 09.
Article in English | MEDLINE | ID: mdl-38324697

ABSTRACT

The Escherichia coli pyruvate dehydrogenase complex (PDHc) is a ~5 MDa assembly of the catalytic subunits pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3). The PDHc core is a cubic complex of eight E2 homotrimers. Homodimers of the peripheral subunits E1 and E3 associate with the core by binding to the peripheral subunit binding domain (PSBD) of E2. Previous reports indicated that 12 E1 dimers and 6 E3 dimers bind to the 24-meric E2 core. Using an assembly arrested E2 homotrimer (E23), we show that two of the three PSBDs in the E23 dimerize, that each PSBD dimer cooperatively binds two E1 dimers, and that E3 dimers only bind to the unpaired PSBD in E23. This mechanism is preserved in wild-type PDHc, with an E1 dimer:E2 monomer:E3 dimer stoichiometry of 16:24:8. The conserved PSBD dimer interface indicates that PSBD dimerization is the previously unrecognized architectural determinant of gammaproteobacterial PDHc megacomplexes.


Subject(s)
Dihydrolipoamide Dehydrogenase , Dihydrolipoyllysine-Residue Acetyltransferase , Escherichia coli , Pyruvate Dehydrogenase Complex , Dihydrolipoamide Dehydrogenase/genetics , Dihydrolipoamide Dehydrogenase/chemistry , Dihydrolipoamide Dehydrogenase/metabolism , Dihydrolipoyllysine-Residue Acetyltransferase/chemistry , Dihydrolipoyllysine-Residue Acetyltransferase/metabolism , Dimerization , Escherichia coli/enzymology , Escherichia coli/genetics , Escherichia coli/metabolism , Pyruvate Dehydrogenase Complex/chemistry , Pyruvate Dehydrogenase Complex/metabolism
3.
Biophys J ; 113(6): 1235-1250, 2017 Sep 19.
Article in English | MEDLINE | ID: mdl-28456331

ABSTRACT

Complexin-1 is a SNARE effector protein that decreases spontaneous neurotransmitter release and enhances evoked release. Complexin binds to the fully assembled four-helical neuronal SNARE core complex as revealed in competing molecular models derived from x-ray crystallography. Presently, it is unclear how complexin binding to the postfusion complex accounts for its effects upon spontaneous and evoked release in vivo. Using a combination of spectroscopic and imaging methods, we characterize in molecular detail how complexin binds to the 1:1 plasma membrane t-SNARE complex of syntaxin-1a and SNAP-25 while simultaneously binding the lipid bilayer at both its N- and C-terminal ends. These interactions are cooperative, and binding to the prefusion acceptor t-SNARE complex is stronger than to the postfusion core complex. This complexin interaction reduces the affinity of synaptobrevin-2 for the 1:1 complex, thereby retarding SNARE assembly and vesicle docking in vitro. The results provide the basis for molecular models that account for the observed clamping effect of complexin beginning with the acceptor t-SNARE complex and the subsequent activation of the clamped complex by Ca2+ and synaptotagmin.


Subject(s)
Adaptor Proteins, Vesicular Transport/metabolism , Lipid Bilayers/metabolism , Nerve Tissue Proteins/metabolism , Synaptosomal-Associated Protein 25/metabolism , Syntaxin 1/metabolism , Vesicle-Associated Membrane Protein 2/metabolism , Adaptor Proteins, Vesicular Transport/chemistry , Adaptor Proteins, Vesicular Transport/genetics , Animals , Escherichia coli , Lipid Bilayers/chemistry , Liposomes/chemistry , Liposomes/metabolism , Mutation , Nerve Tissue Proteins/chemistry , Nerve Tissue Proteins/genetics , Phosphatidylcholines/chemistry , Phosphatidylserines/chemistry , Protein Binding , Rats , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Surface Properties , Synaptosomal-Associated Protein 25/chemistry , Syntaxin 1/chemistry , Vesicle-Associated Membrane Protein 2/chemistry
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