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1.
Plants (Basel) ; 12(19)2023 Oct 01.
Article in English | MEDLINE | ID: mdl-37836201

ABSTRACT

(1) Background: Cytoplasmic male sterility (CMS) is important for exploiting heterosis. Soybean (Glycine max L.) has a low outcrossing rate that is detrimental for breeding sterile lines and producing hybrid seeds. Therefore, the molecular mechanism controlling the outcrossing rate should be elucidated to increase the outcrossing rate of soybean CMS lines; (2) Methods: The male-sterile soybean lines JLCMS313A (with a high outcrossing rate; HL) and JLCMS226A (with a low outcrossing rate; LL) were used for a combined analysis of the transcriptome (RNA-seq) and the targeted phenol metabolome; (3) Results: The comparison between HL and LL detected 5946 differentially expressed genes (DEGs) and 81 phenolic metabolites. The analysis of the DEGs and differentially abundant phenolic metabolites identified only one common KEGG pathway related to flavonoid biosynthesis. The qRT-PCR expression for eight DEGs was almost consistent with the transcriptome data. The comparison of the cloned coding sequence (CDS) regions of the SUS, FLS, UGT, and F3H genes between HL and LL revealed seven single nucleotide polymorphisms (SNPs) only in the F3H CDS. Moreover, five significant differentially abundant phenolic metabolites between HL and LL were associated with flavonoid metabolic pathways. Finally, on the basis of the SNPs in the F3H CDS, one derived cleaved amplified polymorphic sequence (dCAPS) marker was developed to distinguish between HL and LL soybean lines; (4) Conclusions: The flavonoid biosynthesis pathway may indirectly affect the outcrossing rate of CMS sterile lines in soybean.

2.
ACS Appl Mater Interfaces ; 15(30): 36289-36300, 2023 Aug 02.
Article in English | MEDLINE | ID: mdl-37470362

ABSTRACT

NASICON-type Li1.3Al0.3Ti1.7(PO4)3 (LATP) has attracted a lot of attention because of its high ionic conductivity and stability to air and moisture. However, the size effect of LATP primary particles on ionic conductivity is ignored. In this study, different sizes of LATP particles are prepared to investigate the morphology, relative density, and ionic conductivity of the LATP solid electrolyte. The influences of particle size and sintering temperature on the microstructure, phase composition, and electrical properties of LATP ceramics were systematically studied. The medium-sized LATP particle (2 µm) presents a great microstructure with a high relative density of over 97%, the highest ionic conductivity of 6.7 × 10-4 S cm-1, and an activation energy of 0.418 eV. The Li-Li symmetric cells and Li-LFP batteries delivering good electrochemical performance were fabricated with highly conductive LATP ceramics. These results make significant strides in elucidating the relationship between the particle sizes of LATP and its electrochemical performance.

3.
J Clin Med ; 12(3)2023 Feb 01.
Article in English | MEDLINE | ID: mdl-36769824

ABSTRACT

First-line treatment for osteosarcoma includes chemotherapy and surgery. However, the five-year survival rate of refractory osteosarcoma remains unsatisfactory. Osteosarcoma cancer stem cells, possessing stemness and chemoresistance, are one of the critical causes of poor response to chemotherapy. Elucidating regulatory signaling pathways of osteosarcoma cancer stem cells may provide a rationale for improving regimens against chemoresistant osteosarcoma. Methotrexate (MTX)-resistant osteosarcoma cells were established. microRNA expression profiles were used for detecting differentially expressed microRNA in resistant clones and the parental cells. microRNA target databases were employed to predict potential microRNA and mRNA interactions. Flow cytometry was performed to measure stem cell marker Prominin-1 (CD133)-positive cells. Immunofluorescence staining was applied to detect CD133 expression. miR-197-3p mimic or anti-miR-197-3p stably transfected cells were used to generate xenograft models. In the study, we found that miR-197-3p was increased in MTX-resistant cell lines. Overexpression of miR-197-3p enhanced the expression of cancer stem cell markers CD133, Octamer-binding protein 4 (OCT4), Transcription factor SOX-2 (SOX2), and Homeobox protein NANOG (NANOG), as well as chemoresistance-associated genes ATP-dependent translocase ABCB1 (ABCB1) and Broad substrate specificity ATP-binding cassette transporter ABCG2 (ABCG2), whereas miR-197-3p knockdown inhibited stemness and recovered sensitivity to MTX. We also classified the tumor suppressor Speckle-type POZ protein-like (SPOPL) as a target of miR-197-3p. The miR-197-3p mutation that could not combine SPOPL promoter regions was unable to sustain stemness or chemoresistance. Collectively, we discovered miR-197-3p conferred osteosarcoma stemness and chemotherapy resistance by targeting SPOPL, prompting promising therapeutic candidates for refractory osteosarcoma treatment.

4.
Int J Mol Sci ; 23(10)2022 May 11.
Article in English | MEDLINE | ID: mdl-35628200

ABSTRACT

The cytoplasmic male sterility/restorer-of-fertility (CMS/Rf) system plays a vital role in high-efficiency hybrid seed production in crops, including soybean (Glycine max (L.) Merr.). The markers linked to fertility restoration and the restorer-of-fertility (Rf) genes are essential because they can facilitate the breeding of new CMS lines and production of commercial hybrid soybean seeds. To date, several soybean Rf genes have been mapped to various genetic loci in diverse genetic populations. However, the mapping range of restorer genes remains narrow, with relatively limited practical applicability. Therefore, in the present study, F2 and F3 segregating populations derived from the CMS line JLCMS5A crossed with the restorer line JLR2 were developed and used for Rf3 gene fine mapping. Genetic investigation indicated that the restorer line JLR2 was controlled by a single dominant gene, Rf3. By integrating bulk-segregant analysis and next-generation sequencing, a 4 Mb region on chromosome 9 was identified, which was most likely the target region harboring the candidate gene responsible for fertility restoration. This region was further narrowed down to 86.44 Kb via fine mapping in F2 and F3 populations using SSR, InDel, and dCAPS markers. This region contained 10 putative genes (Glyma.09G171100-Glyma.09G172000). Finally, Glyma.09G171200, which encodes a mitochondria-targeted pentatricopeptide repeat protein, was proposed as the potential candidate for Rf3 using sequence alignment and expression analysis in restorer and CMS lines. Based on single-nucleotide polymorphisms in Glyma.09G171200, a CAPS marker co-segregated with Rf3 named CAPS1712 was developed. Our results will be fundamental in the assisted selection and creation of potent lines for the production and rapid selection of novel restorer lines.


Subject(s)
Glycine max , Plant Infertility , Fertility/genetics , Genes, Plant , Genetic Markers , Plant Breeding , Plant Infertility/genetics , Glycine max/genetics
5.
Bioengineered ; 13(4): 8360-8371, 2022 04.
Article in English | MEDLINE | ID: mdl-35311468

ABSTRACT

Endometriosis is defined as the presence of endometrial tissues with cancer-like features in extrauterine locations. Fibroblast growth factor receptor 2 (FGFR2) is a tyrosine kinase that is involved in cancer pathogenesis. This study aimed to determine the role of FGFR2 in endometriosis. A total of 29 pairs of ectopic and eutopic endometrial tissues were collected from women with endometriosis. Endometrial tissues from women with hysteromyomas were considered as normal controls. Primary ectopic stromal cells (ESCs) were isolated from the ectopic endometrium. The role of FGFR2 in ESCs was assessed using immunohistochemistry, polymerase chain reaction, cell counting kit-8 assay, EdU staining, flow cytometry, transwell assay, and western blotting. The following signaling pathways were detected using bioinformatic analysis and confirmed in vitro. By searching the GSE171154, GSE86543, and GSE77182 datasets, FGFR2 was identified as an upregulated overlapping gene in endometriosis. Compared to eutopic and normal endometria, FGFR2 was highly expressed in ectopic tissues. Transfection of primary ESCs with FGFR2 small interfering RNA (siRNA) repressed the viability and proliferation of cells and induced apoptosis. FGFR2 siRNA inhibited the migration, invasion, and transforming growth factor-ß1-triggered epithelial-mesenchymal transition (EMT). Extracellular signal-regulated kinase (ERK) signaling was found to be a downstream signaling pathway for FGFR2. The ERK1/2 inhibitor PD98059 was found to reverse the promoting effects of FGFR2 on ESC proliferation and invasion. FGFR2 silencing effectively inhibited the growth, migration, invasion, and EMT of ESCs. The effects of FGFR2 on endometriosis might be mediated via the activation of ERK signaling.


Subject(s)
Endometriosis , MAP Kinase Signaling System , Receptor, Fibroblast Growth Factor, Type 2 , Cell Movement/genetics , Cell Proliferation/genetics , Endometriosis/genetics , Endometriosis/metabolism , Extracellular Signal-Regulated MAP Kinases/metabolism , Female , Humans , RNA, Small Interfering/metabolism , Receptor, Fibroblast Growth Factor, Type 2/genetics , Receptor, Fibroblast Growth Factor, Type 2/metabolism , Stromal Cells/metabolism
6.
Front Genet ; 12: 654146, 2021.
Article in English | MEDLINE | ID: mdl-34054917

ABSTRACT

Cytoplasmic male sterility (CMS) is an important plant characteristic for exploiting heterosis to enhance crop traits during breeding. However, the CMS regulatory network remains unclear in plants, even though researchers have attempted to isolate genes associated with CMS. In this study, we performed high-throughput sequencing and degradome analyses to identify microRNAs (miRNAs) and their targets in a soybean CMS line (JLCMS9A) and its maintainer line (JLCMS9B). Additionally, the differentially expressed genes during reproductive development were identified using RNA-seq data. A total of 280 miRNAs matched soybean miRNA sequences in miRBase, including mature miRNAs and pre-miRNAs. Of the 280 miRNAs, 30, 23, and 21 belonged to the miR166, miR156, and miR171 families, respectively. Moreover, 410 novel low-abundant miRNAs were identified in the JLCMS9A and JLCMS9B flower buds. Furthermore, 303 and 462 target genes unique to JLCMS9A and JLCMS9B, respectively, as well as 782 common targets were predicted based on the degradome analysis. Target genes differentially expressed between the CMS line and the maintainer line were revealed by an RNA-seq analysis. Moreover, all target genes were annotated with diverse functions related to biological processes, cellular components, and molecular functions, including transcriptional regulation, the nucleus, meristem maintenance, meristem initiation, cell differentiation, auxin-activated signaling, plant ovule development, and anther development. Finally, a network was built based on the interactions. Analyses of the miRNA, degradome, and transcriptome datasets generated in this study provided a comprehensive overview of the reproductive development of a CMS soybean line. The data presented herein represent useful information for soybean hybrid breeding. Furthermore, the study results indicate that miRNAs might contribute to the soybean CMS regulatory network by modulating the expression of CMS-related genes. These findings lay the foundation for future studies on the molecular mechanisms underlying soybean CMS.

7.
Microorganisms ; 9(3)2021 Mar 17.
Article in English | MEDLINE | ID: mdl-33802740

ABSTRACT

The gill and gastrointestinal tract are primary entry routes for pathogens. The symbiotic microbiota are essential to the health, nutrition and disease of fish. Though the intestinal microbiota of Nile tilapia (Oreochromis niloticus) has been extensively studied, information on the mucosa-associated microbiota of this species, especially the gill and gastrointestinal mucosa-associated microbiota, is lacking. This study aimed to characterize the gill and gastrointestinal mucosa- and digesta-associated microbiota, as well as the intestinal metabolite profiles in the New Genetically Improved Farmed Tilapia (NEW GIFT) strain of farmed adult Nile tilapia by high-throughput sequencing and gas chromatography/mass spectrometry metabolomics. The diversity, structure, composition, and predicted function of gastrointestinal microbiota were significantly different across gastrointestinal regions and sample types (Welch t-test; p < 0.05). By comparing the mucosa- and digesta-associated microbiota, linear discriminant analysis (LDA) effect size (LEfSe) analysis revealed that Pelomonas, Ralstoniapickettii, Comamonadaceae, and Staphylococcus were significantly enriched in the mucosa-associated microbiota, whereas many bacterial taxa were significantly enriched in the digesta-associated microbiota, including Chitinophagaceae, Cetobacterium, CandidatusCompetibacter, Methyloparacoccus, and chloroplast (LDA score > 3.5). Furthermore, Undibacterium, Escherichia-Shigella, Paeniclostridium, and Cetobacterium were dominant in the intestinal contents and mucosae, whereas Sphingomonasaquatilis and Roseomonasgilardii were commonly found in the gill and stomach mucosae. The Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt2) analysis revealed that the predictive function of digesta-associated microbiota significantly differed from that of mucosa-associated microbiota (R = 0.8152, p = 0.0001). In addition, our results showed a significant interdependence between specific intestinal microbes and metabolites. Notably, the relative abundance values of several potentially beneficial microbes, including Undibacterium, Crenothrix, and Cetobacterium, were positively correlated with most intestinal metabolites, whereas the relative abundance values of some potential opportunistic pathogens, including Acinetobacter, Mycobacterium, Escherichia-Shigella, Paeniclostridium, Aeromonas, and Clostridiumsensustricto 1, were negatively correlated with most intestinal metabolites. This study revealed the characteristics of gill and gastrointestinal mucosa-associated and digesta-associated microbiota of farmed Nile tilapia and identified a close correlation between intestinal microbes and metabolites. The results serve as a basis for the effective application of targeted probiotics or prebiotics in the diet to regulate the nutrition and health of farmed tilapia.

8.
Sci Rep ; 10(1): 9701, 2020 Jun 16.
Article in English | MEDLINE | ID: mdl-32546763

ABSTRACT

The Beijing-Tianjin-Hebei (BTH) region of above 110 million people, located in North China, is confronted with high risks of precipitation-related disasters during the summer. Efforts to better understand diurnal variation characteristics of summer precipitation and associated physical driving processes are of vital importance to accurate forecast of short-time precipitation. Based on hourly gridded precipitation data at a fine resolution of 0.1° newly developed by China Meteorological Administration (CMA), we investigate diurnal variations of summer precipitation and their linkages with the topographical conditions in the BTH region for the period of 2008-2018. Summer precipitation amounts are shown to nonlinearly change with the topographical height, the largest values occurring at the altitudes of around 350 m in the BTH region. As a whole, diurnal variation of summer mean precipitation in the BTH region exhibits an S-shape structure with the peak appearing around 20:00 LST. While the mountainous precipitation largely triggers the precipitation peak with contribution from coastal and plain areas, the large precipitation in early morning is dominated by the precipitation over coastal and plain areas. Heavy and very heavy precipitation frequencies generally decrease with topographical height while light precipitation frequency increases in a nonlinear manner. The physical processes explaining the tight precipitation-topography linkages are also discussed. Our findings are expected to provide useful information for the improvement of short-time precipitation forecast over the BTH region.

10.
Sci Rep ; 9(1): 12577, 2019 08 29.
Article in English | MEDLINE | ID: mdl-31467378

ABSTRACT

Current seasonal climate predictions mainly reside in the ocean anomalies. However, the prediction skills are generally limited over many extra-tropical land areas where the oceanic effects are relatively weak. In this study, we address the potential of preceding spring soil moisture condition to predict summer hot days over Northeastern China, a typical Northern Hemisphere mid-latitude region. The results show that spring soil moisture condition over Central-Eastern China is closely related with following summer hot days over Northeastern China for the period of 1979-2017. The statistical model based on the preceding spring soil moisture condition yields temporal cross-validated correlation skill of 0.57 for summer hot days over Northeastern China. The spatial pattern correlation skills of independent hindcast experiments for 2009-2017 are also high, ranging from 0.87 to 0.94. Our results can be easily applied to practical prediction of summer hot days over Northeastern China, and help to provide better climate services and reduce the detrimental effects of extreme heat over this extra-tropical region.

11.
J Cell Biochem ; 120(7): 11680-11689, 2019 Jul.
Article in English | MEDLINE | ID: mdl-30790336

ABSTRACT

This study aims to validate whether bone marrow stromal cells (BMSCs) transplantation could promote the resolution and recanalization of deep vein thrombosis (DVT) and to explore the underlying mechanism. The right hind femoral vein was embolized to establish the DVT rabbit model. BMSCs from New Zealand white rabbits were isolated and identified, and then injected into DVT rabbits. After that, the extent of angiogenesis was determined by the amount of capillaries that were positive for antibody against vWF. Macrophage infiltration was measured by immunohistochemistry with F4/80 antibody. M1 or M2 macrophages were identified as F4/80 + CD11c + or F4/80 + CD206 + cells by using flow cytometry analysis, respectively. BMSCs were successfully isolated and identified. BMSCs transplantation promotes macrophage infiltration and angiogenesis in DVT rabbits. BMSCs transplantation causes M1/M2 polarization, altered cytokine production and increased monocyte chemotactic protein 1 (MCP-1) protein expression in DVT rabbits. However, injection of MCP-1 protein not only reversed the effects of BMSCs transplantation on macrophage infiltration and angiogenesis, but also reversed the effects of BMSCs transplantation on M1/M2 polarization and cytokine production in DVT rabbits. BMSCs transplantation promotes the resolution and recanalization of DVT in rabbits through regulating macrophage infiltration and angiogenesis, the underlying mechanism is associated with MCP-1 expression.

12.
Micromachines (Basel) ; 9(4)2018 Apr 13.
Article in English | MEDLINE | ID: mdl-30424115

ABSTRACT

In contrast to traditional drug administration, targeted drug delivery can prolong, localize, target and have a protected drug interaction with the diseased tissue. Drug delivery carriers, such as polymeric micelles, liposomes, dendrimers, nanotubes, and so on, are hard to scale-up, costly, and have short shelf life. Here we show the novel fabrication and characterization of photopatternable magnetic hollow microrobots that can potentially be utilized in microfluidics and drug delivery applications. These magnetic hollowbots can be fabricated using standard ultraviolet (UV) lithography with low cost and easily accessible equipment, which results in them being easy to scale up, and inexpensive to fabricate. Contact-free actuation of freestanding magnetic hollowbots were demonstrated by using an applied 900 G external magnetic field to achieve the movement control in an aqueous environment. According to the movement clip, the average speed of the magnetic hollowbots was estimated to be 1.9 mm/s.

13.
Vascular ; 26(6): 591-599, 2018 Dec.
Article in English | MEDLINE | ID: mdl-29863442

ABSTRACT

PURPOSE: Isolated iliac artery aneurysms are the relatively uncommon condition. This study aims to evaluate the technical issues and clinical outcomes of endovascular repair in a cohort of isolated iliac artery aneurysms treated. METHODS: We retrospectively reviewed 22 consecutive patients with isolated iliac artery aneurysms between December 2006 and September 2016. Iliac artery aneurysms were treated in one of the three ways: (1) standard bifurcated aortic stent graft placement with limb extension; (2) coverage of iliac artery aneurysms with covered stent grafts; and (3) embolization of the arterial branches distal to the aneurysms with coils or vascular plugs. RESULTS: Twenty-two patients (20 men) with a mean age 64.7 years underwent endovascular repair during the study period. The median diameter of the isolated iliac artery aneurysms was 5.9 ± 1.7 cm (2.9-9.0 cm). Technical success was 95.5%. Conversion to open surgery was performed in one patient with bilateral internal iliac artery aneurysms. Four patients underwent placement of a bifurcated stent graft. A covered stent graft was deployed in 16 patients, with embolization of internal iliac artery in 14 patients. Simple coil embolization of isolated internal iliac artery aneurysm was performed in one patient. There was one sudden cardiac death on day 4 after the procedure due to heart failure. During the follow-up period (range: 1-50 months, mean 19.8 months), five patients died of causes not related to isolated iliac artery aneurysms, and transient buttock claudication was observed in one patient. CONCLUSIONS: Our study documents the safety and effectiveness of endovascular repair of isolated iliac artery aneurysms with low morbidity and mortality.


Subject(s)
Blood Vessel Prosthesis Implantation , Embolization, Therapeutic , Endovascular Procedures , Iliac Aneurysm/surgery , Aged , Blood Vessel Prosthesis , Blood Vessel Prosthesis Implantation/adverse effects , Blood Vessel Prosthesis Implantation/instrumentation , Blood Vessel Prosthesis Implantation/mortality , China , Computed Tomography Angiography , Embolization, Therapeutic/adverse effects , Embolization, Therapeutic/instrumentation , Embolization, Therapeutic/mortality , Endovascular Procedures/adverse effects , Endovascular Procedures/instrumentation , Endovascular Procedures/mortality , Female , Humans , Iliac Aneurysm/diagnostic imaging , Iliac Aneurysm/mortality , Male , Middle Aged , Postoperative Complications/etiology , Retrospective Studies , Risk Factors , Stents , Time Factors , Treatment Outcome
14.
Sci Rep ; 8(1): 6677, 2018 04 27.
Article in English | MEDLINE | ID: mdl-29703943

ABSTRACT

The source region of ancient Silk Road (SRASR) in China, a region of around 150 million people, faces a rapidly increased risk of extreme heat in summer. In this study, we develop statistical models to predict summer hot temperature extremes over the SRASR based on a timescale decomposition approach. Results show that after removing the linear trends, the inter-annual components of summer hot days and heatwaves over the SRASR are significantly related with those of spring soil temperature over Central Asia and sea surface temperature over Northwest Atlantic while their inter-decadal components are closely linked to those of spring East Pacific/North Pacific pattern and Atlantic Multidecadal Oscillation for 1979-2016. The physical processes involved are also discussed. Leave-one-out cross-validation for detrended 1979-2016 time series indicates that the statistical models based on identified spring predictors can predict 47% and 57% of the total variances of summer hot days and heatwaves averaged over the SRASR, respectively. When the linear trends are put back, the prediction skills increase substantially to 64% and 70%. Hindcast experiments for 2012-2016 show high skills in predicting spatial patterns of hot temperature extremes over the SRASR. The statistical models proposed herein can be easily applied to operational seasonal forecasting.

15.
Mol Med Rep ; 17(3): 4729-4735, 2018 03.
Article in English | MEDLINE | ID: mdl-29328477

ABSTRACT

Ubiquitin specific peptidase 39 (USP39) serves important roles in mRNA processing and is involved in tumorigenesis of multiple solid malignancies. However, the influence and underlying mechanism of USP39 on human renal cell carcinomas (RCC) remain to be elucidated. The current study investigated the functional roles of USP39 in human RCC cell lines. siRNA­mediated RNA interference was used to downregulate USP39 in RCC cells. CCK­8, wound healing and invasion assays were performed to assess the proliferative ability and metastatic potential. The cell cycle distribution and apoptosis were evaluated by flow cytometry. The activity of signaling pathways and the expression of cell cycle­related proteins were detected by western blot analysis. The siRNA­directed RNA interference targeting USP39 could effectively downregulate the expression level of USP39 in two RCC cell lines. Depletion of USP39 by siRNA significantly suppressed cell growth and decreased invasive capacity of RCC cells. Silencing of USP39 induced cell apoptosis and cell cycle arrest at G2/M phase. Additionally, the expression levels of apoptotic and G2/M phase­related proteins were notably decreased following depletion of USP39. Mechanistically, downregulation of USP39 blocked the activation of Akt and extracellular signal regulated kinase signaling pathways in RCC cells. These findings indicate that USP39 may serve as an oncogenic factor in RCC and could be a potential therapeutic candidate for human RCCs.


Subject(s)
Cell Proliferation , Ubiquitin-Specific Proteases/metabolism , Apoptosis , Carcinoma, Renal Cell/metabolism , Carcinoma, Renal Cell/pathology , Cell Line, Tumor , Cell Movement , Extracellular Signal-Regulated MAP Kinases/metabolism , G2 Phase Cell Cycle Checkpoints , Humans , Kidney Neoplasms/metabolism , Kidney Neoplasms/pathology , M Phase Cell Cycle Checkpoints , Proto-Oncogene Proteins c-akt/metabolism , RNA Interference , RNA, Small Interfering/metabolism , Signal Transduction , Ubiquitin-Specific Proteases/antagonists & inhibitors , Ubiquitin-Specific Proteases/genetics
16.
PLoS One ; 12(7): e0181061, 2017.
Article in English | MEDLINE | ID: mdl-28708857

ABSTRACT

Heterosis has been widely exploited as an approach to enhance crop traits during breeding. However, its underlying molecular genetic mechanisms remain unclear. Recent advances in RNA sequencing technology (RNA-seq) have provided an opportunity to conduct transcriptome profiling for heterosis studies. We used RNA-seq to analyze the flower transcriptomes of two F1 hybrid soybeans (HYBSOY-1 and HYBSOY-5) and their parents. More than 385 million high-quality reads were generated and aligned against the soybean reference genome. A total of 681 and 899 genes were identified as being differentially expressed between HYBSOY-1 and HYBSOY-5 and their parents, respectively. These differentially expressed genes (DEGs) were categorized into four major expression categories with 12 expression patterns. Furthermore, gene ontology (GO) term analysis showed that the DEGs were enriched in the categories metabolic process and catalytic activity, while Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis found that metabolic pathway and biosynthesis of secondary metabolites were enriched in the two F1 hybrids. Comparing the DEGs of the two F1 hybrids by GO term and KEGG pathway analyses identified 26 common DEGs that showed transgressive up-regulation, and which could be considered potential candidate genes for heterosis in soybean F1 hybrids. This identification of an extensive transcriptome dataset gives a comprehensive overview of the flower transcriptomes in two F1 hybrids, and provides useful information for soybean hybrid breeding. These findings lay the foundation for future studies on molecular mechanisms underlying soybean heterosis.


Subject(s)
Genome, Plant , Glycine max/genetics , Hybrid Vigor/genetics , RNA, Plant/metabolism , Transcriptome , Down-Regulation , Flowers/genetics , Gene Expression Profiling , Phenotype , RNA, Plant/chemistry , RNA, Plant/isolation & purification , Real-Time Polymerase Chain Reaction , Sequence Analysis, RNA , Glycine max/metabolism , Up-Regulation
17.
Sci Rep ; 7: 45813, 2017 03 30.
Article in English | MEDLINE | ID: mdl-28358399

ABSTRACT

The population movements for the Chinese New Year (CNY) celebrations, known as the world's largest yearly migration of human beings, have grown rapidly in the past several decades. The massive population outflows from urban areas largely reduce anthropogenic heat release and modify some other processes, and may thus have noticeable impacts on urban climate of large cities in China. Here, we use Beijing as an example to present observational evidence for such impacts over the period of 1990-2014. Our results show a significant cooling trend of up to 0.55 °C per decade, particularly at the nighttime during the CNY holiday relative to the background period. The average nighttime cooling effect during 2005-2014 reaches 0.94 °C relative to the 1990s, significant at the 99% confidence level. The further analysis supports that the cooling during the CNY holiday is attributable primarily to the population outflow of Beijing. These findings illustrate the importance of population movements in influencing urban climate despite certain limitations. As the world is becoming more mobile and increasingly urban, more efforts are called for to understand the role of human mobility at various spatial and temporal scales.

19.
J Vasc Surg ; 57(1): 194-204, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23069071

ABSTRACT

OBJECTIVE: High-mobility-group box protein 1 (HMGB1), as a late mediator of inflammation, plays a key role in inflammatory responses by inducing and extending the production of proinflammatory cytokines. The effect of HGMB1 in the inflammatory disease thromboangiitis obliterans (TAO) is unknown. We aimed to investigate the role of HMGB1 in sodium laurate-induced TAO in rats. METHODS: Male Wistar rats were randomly divided into five groups (n=8 each) for treatment: normal, sham-operated, TAO model, and low-dose (15 mg/kg) or high-dose (30 mg/kg) recombinant A box (rA box) infection (administered intraperitoneally once daily for 15 days). The TAO model was induced by sodium laurate and graded by gross appearance on day 15 after femoral artery injection. Histologic changes were measured by histopathology in rat femoral arteries. Plasma levels of HMGB1, thromboxane B2, 6-keto-prostaglandin F1-α, and blood cell counts and blood coagulation levels were measured. Expression of HMGB1, receptor for advanced glycation end-products (RAGE), interleukin-6, intercellular adhesion molecule-1, and vascular cell adhesion molecule-1 was assessed by immunohistochemistry and immunofluorescence, Western blot analysis, and quantitative reverse-transcription polymerase chain reaction. RESULTS: The typical signs and symptoms of TAO were observed on day 15 after sodium laurate injection. The expression of HMGB1, RAGE, interleukin-6, intercellular adhesion molecule-1, and vascular cell adhesion molecule-1 was markedly increased in rat femoral arteries. Plasma levels of HMGB1 and thromboxane B2 were elevated, but the level of 6-keto-prostaglandin F1-α was decreased. Blood was in a hypercoagulable state, and prothrombin, thrombin, and activated partial thromboplastin times were all significantly shortened, whereas fibrinogen level was increased in TAO rats compared with sham-operated rats. These effects were terminated by the HMGB1 antagonist rA box. CONCLUSIONS: HMGB1 is involved in the inflammatory state in a model of TAO induced by sodium laurate in rats, probably via its receptor RAGE. As the antagonist of HMGB1, rA box can attenuate the development of TAO, which may be a potential therapeutic target for the treatment of TAO.


Subject(s)
Anti-Inflammatory Agents/pharmacology , Femoral Artery/drug effects , HMGB1 Protein/antagonists & inhibitors , Lauric Acids , Peptide Fragments/pharmacology , Thromboangiitis Obliterans/metabolism , Thromboangiitis Obliterans/prevention & control , 6-Ketoprostaglandin F1 alpha/blood , Animals , Anti-Inflammatory Agents/administration & dosage , Anti-Inflammatory Agents/metabolism , Binding, Competitive , Blood Cell Count , Blood Coagulation/drug effects , Blood Coagulation Tests , Blotting, Western , Disease Models, Animal , Femoral Artery/immunology , Femoral Artery/metabolism , Femoral Artery/pathology , Fluorescent Antibody Technique , HMGB1 Protein/blood , HMGB1 Protein/genetics , Injections, Intraperitoneal , Intercellular Adhesion Molecule-1/metabolism , Interleukin-6/metabolism , Male , Peptide Fragments/administration & dosage , Peptide Fragments/metabolism , Rats , Rats, Wistar , Receptor for Advanced Glycation End Products , Receptors, Immunologic/metabolism , Recombinant Proteins/pharmacology , Reverse Transcriptase Polymerase Chain Reaction , Thromboangiitis Obliterans/chemically induced , Thromboxane B2/blood , Vascular Cell Adhesion Molecule-1/metabolism
20.
Clin Anat ; 25(8): 986-8, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22467429

ABSTRACT

A young man with popliteal vascular entrapment syndrome (PVES) presented with arterial occlusion, deep venous thrombosis (DVT), pulmonary artery embolism, and pulmonary hypertension. He received computer tomography (CT) and magnetic resonance imaging (MRI). Both CT and MRI showed that the left thrombosed popliteal vein and artery were entrapped by a variant lateral head of the gastrocnemius muscle. The anomalous slip originated from the lateral head of left gastrocnemius muscle and ended between the medial and lateral femoral condyles. PVES Type V was diagnosed. Compression of the popliteal vein without arterial compression can be explained by the more lateral location of the popliteal vein relative to the artery and its proximity to the lateral head of the gastrocnemius. Compression of the popliteal vein with arterial compression was found in this patient. Compression of popliteal vein and artery in this patient led to DVT and arterial occlusion. The case was the first reported case accompanied by popliteal vein and artery thrombosis caused by variant lateral head of the gastrocnemius muscle. Radiologists and doctors should continue to look for possible abnormalities in the popliteal fossa in young patients with peripheral vascular disease because early diagnosis of PVES allows better choices and outcomes of treatment.


Subject(s)
Muscle, Skeletal/abnormalities , Peripheral Vascular Diseases/etiology , Popliteal Artery , Popliteal Vein , Pulmonary Embolism/etiology , Thrombosis/etiology , Adult , Humans , Male , Peripheral Vascular Diseases/diagnostic imaging , Peripheral Vascular Diseases/surgery , Pulmonary Artery/diagnostic imaging , Pulmonary Embolism/diagnostic imaging , Pulmonary Embolism/surgery , Thrombosis/diagnostic imaging , Thrombosis/surgery , Tomography, X-Ray Computed , Treatment Outcome , Vascular Surgical Procedures
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