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1.
PLoS One ; 19(5): e0302789, 2024.
Article in English | MEDLINE | ID: mdl-38768109

ABSTRACT

Employing the "Green Credit Guidelines" implemented in 2012 as the basis for a quasi-natural experiment, this study applies the method of Difference-in-Differences(DID) to investigate the influence of the Green Credit Policy on both the quantity and quality of enterprise innovation. The outcomes of our analysis reveal that the policy has significantly boosted both the quantity and quality of innovation among enterprises identified as heavy polluters. It is noteworthy that the policy's positive impact on innovation quantity surpasses its positive effect on innovation quality. This substantiates that the Green Credit Policy effectively generates incentivizing outcomes for innovation among the heavy polluters, thereby verifying Porter's hypothesis within the domain of green credit in China. Furthermore, we find that the positive impact is more significant for enterprises with lower innovation capabilities, large-scale enterprises, state-owned enterprises, and those situated in both the Eastern and Western regions. Through these findings, this study illuminates a novel perspective on the interplay between the Green Credit Policy and enterprise innovation dynamics in China.


Subject(s)
Environmental Pollution , China , Environmental Pollution/prevention & control , Conservation of Natural Resources/methods , Inventions , Humans
2.
Heliyon ; 9(12): e23131, 2023 Dec.
Article in English | MEDLINE | ID: mdl-38144269

ABSTRACT

Internal Carbon Pricing (ICP) represents an innovative approach to carbon emission reduction. The implementation of the ICP involves enterprises and internal organizations, with its outcomes closely tied to government actions. In this study, a tripartite evolutionary game model comprising these subjects was constructed, and subsequent simulation analyses were conducted. The results revealed the following key findings: (1) When the combined total of carbon fees and governments' emission reduction subsidies surpasses the aggregate of carbon fees returned to internal organizations and ICP implementation costs, and when enterprises' revenues exceed governments' subsidies, all three parties will evolve towards ESS (1,1,1). This signifies that enterprises opt for the ICP, internal organizations actively reduce emissions, and governments engage in proactive regulation. (2) Reducing the cost of implementing ICP, increasing the carbon fee rebate ratio, raising governments' subsidies, and elevating the internal carbon price all contribute to promoting the attainment of the evolutionary game results ESS (1,1,1). However, it's important to note that higher governments' subsidies and carbon fee rebate ratios do not necessarily lead to a greater incentive for the three parties to reach the ESS(1,1,1). These findings provide a solid theoretical foundation for enterprises considering the implementation of the ICP in the future.

3.
Comput Biol Med ; 157: 106751, 2023 05.
Article in English | MEDLINE | ID: mdl-36934534

ABSTRACT

Accurate segmentation of brain tumor plays an important role in MRI diagnosis and treatment monitoring of brain tumor. However, the degree of lesions in each patient's brain tumor region is usually inconsistent, with large structural differences, and brain tumor MR images are characterized by low contrast and blur, current deep learning algorithms often cannot achieve accurate segmentation. To address this problem, we propose a novel end-to-end brain tumor segmentation algorithm by integrating the improved 3D U-Net network and super-resolution image reconstruction into one framework. In addition, the coordinate attention module is embedded before the upsampling operation of the backbone network, which enhances the capture ability of local texture feature information and global location feature information. To demonstrate the segmentation results of the proposed algorithm in different brain tumor MR images, we have trained and evaluated the proposed algorithm on BraTS datasets, and compared with other deep learning algorithms by dice similarity scores. On the BraTS2021 dataset, the proposed algorithm achieves the dice similarity score of 89.61%, 88.30%, 91.05%, and the Hausdorff distance (95%) of 1.414 mm, 7.810 mm, 4.583 mm for the enhancing tumors, tumor cores and whole tumors, respectively. The experimental results illuminate that our method outperforms the baseline 3D U-Net method and yields good performance on different datasets. It indicated that it is robust to segmentation of brain tumor MR images with structures vary considerably.


Subject(s)
Brain Neoplasms , Humans , Algorithms , Brain Neoplasms/diagnostic imaging , Image Processing, Computer-Assisted , Magnetic Resonance Imaging
5.
Int J Cardiol ; 345: 98-104, 2021 Dec 15.
Article in English | MEDLINE | ID: mdl-34710491

ABSTRACT

Programmed cell death 5 (PDCD5) is a tumor suppressor gene that regulates the cell cycle, apoptosis and immune responses. However, the physiological function of Pdcd5 in cardiac aging remains unknown. We find that Pdcd5 mRNA and protein levels were significantly increased in the heart of mice with age. Therefore, we hypothesize that Pdcd5 regulates cardiac aging. To test the hypothesis, we generated muscle-specific Pdcd5-deficient mice. Mature adult Pdcd5-deficient mice had normal cardiac morphology and function. In naturally aged mice, Pdcd5 deficiency alleviated age-related cardiac phenotypes including reduced fibrosis and suppressed cardiomyocyte hypertrophy. Moreover, muscle-specific Pdcd5 deficiency attenuated cellular senescence in the heart as demonstrated by decreased number of senescence-associated ß-galactosidase-positive cells, diminished p53, p21 and p16 expression, and reduced the senescence-associated secretory phenotype. Apoptotic cell death was reduced by Pdcd5 deficiency in the heart as revealed by terminal deoxynucleotidyl transferase dUTP nick end labeling assay, which was coincident with diminished Bcl-2-associated X protein, and enhanced B-cell lymphoma 2 and X-linked inhibitor of apoptosis protein expression. Mitochondrial quality in cardiomyocytes was improved by Pdcd5 deficiency through increased Parkin-mediated mitophagy. In addition, Pdcd5 deficiency alleviated doxorubicin-induced premature cellular senescence and cardiac aging. Furthermore, Pdcd5 protein abundance was significantly correlated with p53 protein abundance, and Pdcd5 interacted with p53 in the heart. Taken together, our results reveal that Pdcd5 deficiency attenuates cardiac aging by reducing cellular senescence and apoptosis, and increasing Parkin-mediated mitophagy, likely through p53. Pdcd5 is a novel regulator of cardiac aging and a potential therapeutic target.


Subject(s)
Aging , Cellular Senescence , Aging/genetics , Animals , Apoptosis , Apoptosis Regulatory Proteins/genetics , Mice , Mitophagy , Myocytes, Cardiac , Neoplasm Proteins
6.
Aging (Albany NY) ; 11(18): 7620-7638, 2019 09 12.
Article in English | MEDLINE | ID: mdl-31514170

ABSTRACT

Background: Aging has often been linked to age-related vascular disorders. The elucidation of the putative genes and pathways underlying vascular aging likely provides useful insights into vascular diseases at advanced ages. Transcriptional regulatory network analysis is the key to describing genetic interactions between molecular regulators and their target gene transcriptionally changed during vascular aging.Results: A total of 469 differentially expressed genes were parsed into 6 modules. Among the incorporated sample traits, the most significant module related to vascular aging was associated with triglyceride and enriched with biological terms like proteolysis, blood circulation, and circulatory system process. The module associated with triglyceride was preserved in an independent microarray dataset, indicating the robustness of the identified vascular aging-related subnetwork. Additionally, Enpp5, Fez1, Kif1a, F3, H2-Q7, and their interacting miRNAs mmu-miR-449a, mmu-miR-449c, mmu-miR-34c, mmu-miR-34b-5p, mmu-miR-15a, and mmu-let-7, exhibited the most connectivity with external lipid-related traits. Transcriptional alterations of the hub genes Enpp5, Fez1, Kif1a, and F3, and the interacting microRNAs mmu-miR-34c, mmu-miR-34b-5p, mmu-let-7, mmu-miR-449a, and mmu-miR-449c were confirmed.Conclusion: Our findings demonstrate that triglyceride and free fatty acid-related genes are key regulators of age-related vascular dysfunction in mice and show that the hub genes for Enpp5, Fez1, Kif1a, and F3 as well as their interacting miRNAs mmu-miR-34c, mmu-miR-34b-5p, mmu-let-7, mmu-miR-449a, and mmu-miR-449c, could serve as potential biomarkers in vascular aging.Methods: The microarray gene expression profiles of aorta samples from 6-month old mice (n=6) and 20-month old mice (n=6) were processed to identify nominal differentially expressed genes. These nominal differentially expressed genes were subjected to a weighted gene co-expression network analysis. A network-driven integrative analysis with microRNAs and transcription factors was performed to define significant modules and underlying regulatory pathways associated with vascular aging, and module preservation test was conducted to validate the age-related modules based on an independent microarray gene expression dataset in mice aorta samples including three 32-week old wild-type mice (around 6-month old) and three 78-week old wild-type mice (around 20-month old). Gene ontology and protein-protein interaction analyses were conducted to determine the hub genes as potential biomarkers in the progress of vascular aging. The hub genes were further validated with quantitative real-time polymerase chain reaction in aorta samples from 20 young (6-month old) mice and 20 old (20-month old) mice.


Subject(s)
Aging/genetics , Fatty Acids, Nonesterified/metabolism , Lipid Metabolism/genetics , Triglycerides/metabolism , Vascular Diseases/genetics , Aging/metabolism , Animals , Gene Expression Profiling , Gene Expression Regulation , Gene Regulatory Networks , Mice , Microarray Analysis , Signal Transduction/genetics , Vascular Diseases/metabolism
7.
Int J Cardiol ; 296: 129-135, 2019 12 01.
Article in English | MEDLINE | ID: mdl-31439425

ABSTRACT

BACKGROUND: The therapeutic potential of doxorubicin (DOX) is limited by cardiotoxicity. Rubicon is an inhibitory interacting partner of autophagy protein UVRAG. Currently, the role of Rubicon in DOX-induced cardiotoxicity is unknown. In this study, we test the hypothesis that loss of Rubicon attenuates DOX-induced cardiotoxicity. METHODS: A mouse model of acute DOX-induced cardiotoxicity was established by a single intraperitoneal injection of DOX at a dose of 20 mg/kg. Rubicon expression was detected by Western blot. Cardiac damage was determined by measuring activities of lactate dehydrogenase and myocardial muscle creatine kinase in the serum, cytoplasmic vacuolization, collagen deposition, ROS levels, ATP content and mitochondrial damage in the heart. Cardiac morphometry and function were assessed by echocardiography. Markers for autophagy, mitophagy and mitochondrial dynamics were evaluated by Western blot and real time reverse transcription polymerase chain reaction. RESULTS: Rubicon expression was reduced in the heart 16 h after DOX treatment. DOX induced accumulation of cytoplasmic vacuolization and collagen, increased serum activities of lactate dehydrogenase and myocardial muscle creatine kinase, enhanced ROS levels, reduced ATP content, pronounced mitochondrial damage and greater left ventricular wall thickness in wild type mice, which were mitigated by Rubicon deficiency. Mechanistically, loss of Rubicon improved DOX-induced impairment of autophagic flux, Parkin-mediated mitophagy and mitochondrial fission and fusion in the heart. CONCLUSIONS: Loss of Rubicon ameliorates DOX-induced cardiotoxicity through enhancement of mitochondrial quality by improving autophagic flux, mitophagy and mitochondrial dynamics. Rubicon is a potential molecular target for prevention and therapy of DOX cardiotoxicity.


Subject(s)
Cardiotoxicity/etiology , Doxorubicin/adverse effects , Intracellular Signaling Peptides and Proteins/physiology , Mitochondria/physiology , Animals , Cardiotoxicity/prevention & control , Female , Male , Mice
8.
Cardiovasc Res ; 115(8): 1320-1331, 2019 07 01.
Article in English | MEDLINE | ID: mdl-30428088

ABSTRACT

AIMS: WD40 repeat and FYVE domain containing 3 (WDFY3) is an adaptor protein involved in selective degradation of protein aggregates by autophagy. Recent studies have revealed that Wdfy3 is critical in the regulation of brain development and osteoclastogenesis in vivo. However, the function of Wdfy3 in cardiac development remains completely unknown. In this study, we explore the role of Wdfy3 in cardiac morphogenesis using Wdfy3-deficient mice. METHODS AND RESULTS: Wdfy3 was expressed in the developing heart in mice and peaked at embryonic day 12.5 (E12.5). Loss of Wdfy3 in mice led to embryonic and neonatal lethality. Wdfy3-deficient mice displayed various congenital heart defects including membranous ventricular septal defect (VSD), aortic overriding (AO), double outlet right ventricle (DORV), thinning of ventricular wall, ventricular dilation, and disorganized ventricular trabeculation at E14.5. Cell proliferation was reduced in the hearts from Wdfy3-deficient mice at E12.5 and E14.5, which was associated with enhanced p21 expression. Cardiomyocyte differentiation was diminished as demonstrated by reduced Myh6 and MLC2v in Wdfy3-deficient mice at E14.5. In addition, Nkx2-5 and Mef2c, two cardiac transcription factors regulating cardiomyocyte differentiation, were decreased in Wdfy3-deficient mice at E14.5. Apoptotic cell death remained unaltered. These data suggest that reduced cell proliferation and cardiomyocyte differentiation contribute to cardiac defects in Wdfy3-deficient mice. Mechanistically, loss of Wdfy3 led to a reduction in protein levels of Notch 1 intracellular domain and its downstream targets Hes1 and Hey1, which was accompanied with enhanced full-length Notch1 protein levels. In vitro luciferase assay showed that Wdfy3 deficiency induced activity of p21 promoter, while diminished activity of Hes1 promoter through modulation of Notch1 signalling. Moreover, Wdfy3 was co-localized with Notch1 in primary embryonic cardiomyocytes. Endogenous Wdfy3 physically interacted with full-length Notch1 in the developing heart. These results suggest that Notch1 signalling is perturbed in the hearts from Wdfy3-deficient mice. No alteration of autophagy was detected in the hearts from Wdfy3-deficient mice. CONCLUSION: Taken together, our data suggest that Wdfy3 plays an essential role in cardiac development, which may be mediated by modulation of Notch1 signalling.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Autophagy-Related Proteins/metabolism , Heart Defects, Congenital/metabolism , Heart/embryology , Myocytes, Cardiac/metabolism , Adaptor Proteins, Signal Transducing/deficiency , Adaptor Proteins, Signal Transducing/genetics , Animals , Apoptosis , Autophagy-Related Proteins/deficiency , Autophagy-Related Proteins/genetics , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Cell Differentiation , Cell Proliferation , Cells, Cultured , Cyclin-Dependent Kinase Inhibitor p21/genetics , Cyclin-Dependent Kinase Inhibitor p21/metabolism , Gene Expression Regulation, Developmental , Gestational Age , Heart/physiopathology , Heart Defects, Congenital/embryology , Heart Defects, Congenital/genetics , Heart Defects, Congenital/physiopathology , Mice, Inbred C57BL , Mice, Knockout , Morphogenesis , Myocytes, Cardiac/pathology , Receptor, Notch1/genetics , Receptor, Notch1/metabolism , Signal Transduction , Transcription Factor HES-1/genetics , Transcription Factor HES-1/metabolism
9.
Sci Rep ; 7: 43251, 2017 02 22.
Article in English | MEDLINE | ID: mdl-28225086

ABSTRACT

Doxorubicin (DOX) is an effective chemotherapeutic drug in the treatment of various types of cancers. However, its clinical application has been largely limited by potential development of cardiotoxicity. Previously we have shown that ultra-violet radiation resistance-associated gene (UVRAG), an autophagy-related protein, is essential for the maintenance of autophagic flux in the heart under physiological conditions. Here, we sought to determine the role of UVRAG-mediated autophagy in DOX-induced cardiotoxicity. Mouse models of acute or chronic DOX-induced cardiotoxicity were established. UVRAG deficiency exacerbated DOX-induced mortality and cardiotoxicity manifested by increased cytoplasmic vacuolization, enhanced collagen accumulation, elevated serum activities of lactate dehydrogenase and myocardial muscle creatine kinase, higher ROS levels, aggravated apoptosis and more depressed cardiac function. Autophagic flux was impaired in DOX-induced cardiotoxicity. UVRAG deficiency aggravated impaired autophagic flux in DOX-induced cardiotoxicity. Intermittent fasting restored autophagy and ameliorated pathological alterations of DOX-induced cardiotoxicity. Collectively, our data suggest that UVRAG deficiency exacerbates DOX-induced cardiotoxicity, at least in part, through aggravation of DOX-induced impaired autophagic flux. Intermittent fasting, which restores blunted autophagic flux and ameliorates pathology in the mouse models of DOX-induced cardiotoxicity, may be used as a potential preventive or therapeutic approach for DOX cardiotoxicity.


Subject(s)
Antibiotics, Antineoplastic/adverse effects , Cardiotoxicity , Doxorubicin/adverse effects , Tumor Suppressor Proteins/deficiency , Animals , Mice , Survival Analysis
10.
Curr Cardiol Rev ; 11(3): 229-37, 2015.
Article in English | MEDLINE | ID: mdl-25373623

ABSTRACT

Macroautophagy (hereafter termed autophagy) is a highly evolutionarily conserved pathway that degrades intracellular components such as damaged organelles in lysosome. Autophagy occurs at low basal levels in virtually all types of cells, which is required for the maintenance of cellular homeostasis. Beclin 1 protein, encoded by the beclin 1 gene, plays a central role in the regulation of autophagy. Beclin 1 primarily functions as a scaffolding protein assembling Beclin 1 interactome to regulate Class III PI3K/VPS34 activity, which in turn, tightly controls autophagy at multiple stages. In addition to autophagy, Beclin 1 participates in the regulation of other biological processes such as endocytosis, apoptosis and phagocytosis. Fine-tuning of Beclin 1 protein levels, intracellular localization and the assembly of its interactome is pivotal for the proper execution of these biological functions. Deregulation of Beclin 1 contributes to the pathogenesis of a variety of human diseases. In this review, we summarize biology of Beclin 1 and its role in human pathology, with an emphasis on heart disease.


Subject(s)
Apoptosis Regulatory Proteins/metabolism , Heart Diseases/metabolism , Membrane Proteins/metabolism , Animals , Apoptosis Regulatory Proteins/genetics , Autophagy , Beclin-1 , Gene Expression Regulation , Heart Diseases/genetics , Heart Diseases/pathology , Humans , Membrane Proteins/genetics , MicroRNAs/genetics , Protein Processing, Post-Translational
11.
J Cardiovasc Pharmacol ; 65(3): 252-61, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25502307

ABSTRACT

: Rubicon has been suggested to suppress autophagosome maturation by negatively regulating PI3KC3/Vps34 activity. However, the physiological function of Rubicon remains elusive. We hypothesized that Rubicon deficiency enhances autophagic flux in the heart and affects cardiac function. Rubicon knockout (KO) mice were generated by piggyBac transposition. Loss of Rubicon was demonstrated at both mRNA and protein levels. Rubicon KO mice were born in Mendelian ratios. Autophagic flux, assessed by bafilomycin A1-induced changes in LC3 II protein abundance, was enhanced in the heart of Rubicon KO mice compared with wild-type (WT) controls. Hematoxylin-eosin staining and picrosirius red staining showed that Rubicon KO mice exhibited normal baseline cardiac morphology. Echocardiography revealed that ejection fraction and fractional shortening, 2 indices of cardiac function, were comparable between Rubicon KO mice at 2, 8, and 12 months of age (n = 6-8 for each age group) and the corresponding WT controls (n = 6-8 for each age group). In a mouse model of lipopolysaccharide (LPS)-induced sepsis, the survival time of LPS-treated Rubicon KO mice (n = 10) was prolonged compared with LPS-treated WT controls (n = 11). Echocardiography revealed that Rubicon deficiency partially normalized LPS-induced reduction in stroke volume and cardiac output 12 hours after LPS administration compared with LPS-treated WT controls (n = 6 for each group). Autophagic flux was enhanced in Rubicon-deficient hearts 12 hours after LPS treatment compared with LPS-treated WT controls. Real-time quantitative polymerase chain reaction suggested that proinflammatory cytokine expression was not significantly different between LPS-treated Rubicon KO mice and WT controls (n = 3 for each group). Our data demonstrate for the first time that Rubicon deficiency enhances autophagic flux in the heart and protects mice from lethality and reduction in stroke volume induced by LPS.


Subject(s)
Autophagy , Heart Diseases/prevention & control , Intracellular Signaling Peptides and Proteins/deficiency , Lipopolysaccharides , Myocardial Contraction , Myocardium/metabolism , Sepsis/metabolism , Stroke Volume , Animals , Cytokines/genetics , Cytokines/metabolism , Disease Models, Animal , Gene Expression Regulation , Genotype , Heart Diseases/genetics , Heart Diseases/metabolism , Heart Diseases/pathology , Heart Diseases/physiopathology , Inflammation Mediators/metabolism , Intracellular Signaling Peptides and Proteins/genetics , Mice, Knockout , Myocardium/pathology , Phenotype , RNA, Messenger/metabolism , Sepsis/chemically induced , Sepsis/genetics , Sepsis/pathology , Sepsis/physiopathology , Time Factors
12.
Cardiovasc Res ; 101(1): 48-56, 2014 Jan 01.
Article in English | MEDLINE | ID: mdl-24081163

ABSTRACT

AIMS: Ultraviolet irradiation resistance-associated gene (UVRAG) is a tumour suppressor candidate that regulates cell autophagy and endocytosis. However, the in vivo function of UVRAG remains poorly understood. We sought to determine the physiological role of UVRAG in the heart. METHODS AND RESULTS: We characterized mice with disruption of the UVRAG gene by piggyBac (PB) transposon insertion. PB construct was inserted into intron 14 of the UVRAG gene and disruption of UVRAG transcript was confirmed by reverse transcript-polymerase chain reaction. Immunoblotting revealed that UVRAG was deficient in multiple tissues. Autophagic flux was attenuated in UVRAG-deficient (UVRAG(PB/PB)) mouse embryonic fibroblasts. In UVRAG-deficient hearts, autophagosomes were accumulated and autophagic flux, assessed as the increased protein abundance of LC3 II in chloroquine-treated animals, was impaired. UVRAG-deficient mice were viable, fertile, and developmentally normal. However, they developed age-related cardiomyopathy associated with compromised cardiac function. In addition, inflammatory response was enhanced in UVRAG-deficient hearts. CONCLUSION: Collectively, our findings suggest that UVRAG is essential for the regulation of autophagy and maintenance of cardiac function.


Subject(s)
Autophagy , Cardiomyopathies/etiology , Heart/physiology , Tumor Suppressor Proteins/physiology , Aging/physiology , Animals , Cardiomyopathies/metabolism , Cells, Cultured , Female , Inflammation/etiology , Inflammation/metabolism , Male , Mice , Pregnancy
13.
Sheng Wu Yi Xue Gong Cheng Xue Za Zhi ; 30(4): 873-8, 2013 Aug.
Article in Chinese | MEDLINE | ID: mdl-24059073

ABSTRACT

To compare the bio-mechanical characteristics of cages of two types, i. e., polyetheretherketone/ hydroxyapatite/carbon fiber (PEEK/HA/CF) and titanium combined with internal pedicle screw fixation in lumbar model, and to provide experimental evidences for clinical application, we constructed a three-dimensional finite element model of an intact L2-L4 segment by using computer tomography scans of a healthy male. The three-dimensional finite element models of an intact L2-L4 segment and single cage plus bilateral vertebral pedicle screw fixation were established. The angular motion of fused segment and stress distribution in the bone graft and cage and L3 inferior endplate under different loads were recorded. The result showed that the peak Von Mises stresses of the bone graft of PEEK/HA/CF group were at least 2.2 time as that of titanium group. The peak Von Mises stresses of L3 inferior endplate of the titanium group were at least 2. 3 times as that of PEEK/HA/CF group. These stresses were concentrated at places where the cage interfaced with the endplate. The angular variation of the titanium group showed similarity to PEEK/HA/CF group. The PEEK/HA/CF cage could provide stability similar to that of titanium cage in the presence of posterior instrumentation. It could increase the load transfer through the bone graft and promote the bone fusion. It could also reduce the stresses in endplates adjacent to the cage and reduce the subsidence of the cage.


Subject(s)
Carbon , Durapatite , Finite Element Analysis , Ketones , Polyethylene Glycols , Spinal Fusion/instrumentation , Adult , Benzophenones , Carbon Fiber , Computer Simulation , Humans , Lumbar Vertebrae/diagnostic imaging , Lumbar Vertebrae/surgery , Male , Polymers , Prosthesis Design , Spine/diagnostic imaging , Tomography, X-Ray Computed
14.
PLoS One ; 8(8): e69856, 2013.
Article in English | MEDLINE | ID: mdl-23990889

ABSTRACT

DNA origami is an emerging technology that assembles hundreds of staple strands and one single-strand DNA into certain nanopattern. It has been widely used in various fields including detection of biological molecules such as DNA, RNA and proteins. MicroRNAs (miRNAs) play important roles in post-transcriptional gene repression as well as many other biological processes such as cell growth and differentiation. Alterations of miRNAs' expression contribute to many human diseases. However, it is still a challenge to quantitatively detect miRNAs by origami technology. In this study, we developed a novel approach based on streptavidin and quantum dots binding complex (STV-QDs) labeled single strand displacement reaction on DNA origami to quantitatively detect the concentration of miRNAs. We illustrated a linear relationship between the concentration of an exemplary miRNA as miRNA-133 and the STV-QDs hybridization efficiency; the results demonstrated that it is an accurate nano-scale miRNA quantifier motif. In addition, both symmetrical rectangular motif and asymmetrical China-map motif were tested. With significant linearity in both motifs, our experiments suggested that DNA Origami motif with arbitrary shape can be utilized in this method. Since this DNA origami-based method we developed owns the unique advantages of simple, time-and-material-saving, potentially multi-targets testing in one motif and relatively accurate for certain impurity samples as counted directly by atomic force microscopy rather than fluorescence signal detection, it may be widely used in quantification of miRNAs.


Subject(s)
DNA/chemistry , MicroRNAs/chemistry , Amino Acid Motifs , Biotinylation , Cell Differentiation , Cell Proliferation , DNA/genetics , DNA, Single-Stranded/chemistry , Humans , Microscopy, Atomic Force , Nanotechnology , Nucleic Acid Hybridization , Quantum Dots , RNA Processing, Post-Transcriptional , Streptavidin/chemistry
15.
PLoS One ; 7(1): e30097, 2012.
Article in English | MEDLINE | ID: mdl-22253891

ABSTRACT

Programmed cell death 5 (PDCD5) is a cytosolic protein suppressing growth of multiple types of cancer cells through activating p53. We hypothesized that PDCD5 plays an essential role in cardiac remodeling and function. PDCD5 was significantly up-regulated in the hearts from mice subjected to angiotensin II treatment or transverse aortic constriction. Thus, we generated transgenic mice over-expressing human PDCD5 under the control of alpha myosin heavy chain promoter to examine the role of PDCD5 in cardiac remodeling. Transgenic founder died spontaneously displayed enlarged heart. The high PDCD5 over-expressing line (10-fold) showed reduced survival rate, increase in heart weight normalized to body weight. Real-Time RT-PCR analysis revealed fetal gene program was up-regulated. Echocardiography and histopathological examination showed characteristics of dilated cardiomyopathy and heart failure in transgenic mice. Western blot and immunohistochemistry analysis showed autophagy was dramatically increased in transgenic mice as compared to WT littermates control mice, while apoptosis remained unchanged. The enhanced autophagy in high over-expressing line was associated with significant increase in p53 activity and its downstream target damage-regulated autophagy modulator expression. The low over-expressing line (3.5-fold) appeared normal, but was more susceptible to angiotensin II-induced cardiac hypertrophy. This study is the first providing evidence that PDCD5 plays an important role in cardiac remodeling.


Subject(s)
Apoptosis Regulatory Proteins/metabolism , Autophagy , Myocardium/metabolism , Myocardium/pathology , Neoplasm Proteins/metabolism , Ventricular Remodeling , Angiotensin II , Animals , Apoptosis , Cardiomegaly/complications , Cardiomegaly/diagnostic imaging , Cardiomegaly/pathology , Cardiomegaly/physiopathology , Cardiomyopathy, Dilated/complications , Cardiomyopathy, Dilated/diagnostic imaging , Cardiomyopathy, Dilated/pathology , Cardiomyopathy, Dilated/physiopathology , Heart Failure/complications , Heart Failure/diagnostic imaging , Heart Failure/pathology , Heart Failure/physiopathology , Humans , Mice , Mice, Transgenic , Myosin Heavy Chains/metabolism , Organ Specificity , Survival Analysis , Ultrasonography , Up-Regulation
16.
Methods Enzymol ; 453: 343-63, 2009.
Article in English | MEDLINE | ID: mdl-19216915

ABSTRACT

The heart is a highly plastic organ capable of remodeling in response to changes in physiological or pathological demand. When workload increases, the heart compensates through hypertrophic growth of individual cardiomyocytes to increase cardiac output. However, sustained stress, such as occurs with hypertension or following myocardial infarction, triggers changes in sarcomeric protein composition and energy metabolism, loss of cardiomyocytes, ventricular dilation, reduced pump function, and ultimately heart failure. It has been known for some time that autophagy is active in cardiomyocytes, occurring at increased levels in disease. Yet the potential contribution of cardiomyocyte autophagy to ventricular remodeling and disease pathogenesis has only recently been explored. This latter fact stems largely from the recent emergence of tools to probe molecular mechanisms governing cardiac plasticity and to define the role of autophagic flux in the context of heart disease. In this chapter, we briefly review prominent mouse models useful in the study of load-induced heart disease and standard techniques used to assess whether a molecular or cellular event is adaptive or maladaptive. We then outline methods available for monitoring autophagic activity in the heart, providing detailed protocols for several techniques unique to working with heart and other striated muscles.


Subject(s)
Autophagy/physiology , Heart Diseases/metabolism , Animals , Cathepsin D/metabolism , Immunohistochemistry , Lysosomal Membrane Proteins/metabolism , Mice , Mice, Inbred C57BL , Microtubule-Associated Proteins/metabolism , Ventricular Remodeling/physiology
17.
Proc Natl Acad Sci U S A ; 105(28): 9745-50, 2008 Jul 15.
Article in English | MEDLINE | ID: mdl-18621691

ABSTRACT

A missense mutation in the alphaB-crystallin (CryAB) gene triggers a severe form of desmin-related cardiomyopathy (DRCM) characterized by accumulation of misfolded proteins. We hypothesized that autophagy increases in response to protein aggregates and that this autophagic activity is adaptive. Mutant CryAB (CryAB(R120G)) triggered a >2-fold increase in cardiomyocyte autophagic activity, and blunting autophagy increased the rate of aggregate accumulation and the abundance of insoluble CryAB(R120G)-associated aggregates. Cardiomyocyte-restricted overexpression of CryAB(R120G) in mice induced intracellular aggregate accumulation and systolic heart failure by 12 months. As early as 2 months (well before the earliest declines in cardiac function), we detected robust autophagic activity. To test the functional significance of autophagic activation, we crossed CryAB(R120G) mice with animals harboring heterozygous inactivation of beclin 1, a gene required for autophagy. Blunting autophagy in vivo dramatically hastened heart failure progression with a 3-fold increase in interstitial fibrosis, greater accumulation of polyubiquitinated proteins, larger and more extensive intracellular aggregates, accelerated ventricular dysfunction, and early mortality. This study reports activation of autophagy in DRCM. Further, our findings point to autophagy as an adaptive response in this proteotoxic form of heart disease.


Subject(s)
Autophagy/physiology , Cardiomyopathies/etiology , Desmin , alpha-Crystallin B Chain/genetics , Animals , Fibrosis , Mice , Mice, Mutant Strains , Mutation, Missense , Myocytes, Cardiac , Polyubiquitin
18.
Circulation ; 117(24): 3070-8, 2008 Jun 17.
Article in English | MEDLINE | ID: mdl-18541737

ABSTRACT

BACKGROUND: Recent reports demonstrate that multiple forms of cardiovascular stress, including pressure overload, chronic ischemia, and infarction-reperfusion injury, provoke an increase in autophagic activity in cardiomyocytes. However, nothing is known regarding molecular events that stimulate autophagic activity in stressed myocardium. Because autophagy is a highly conserved process through which damaged proteins and organelles can be degraded, we hypothesized that stress-induced protein aggregation is a proximal trigger of cardiomyocyte autophagy. METHODS AND RESULTS: Here, we report that pressure overload promotes accumulation of ubiquitinated protein aggregates in the left ventricle, development of aggresome-like structures, and a corresponding induction of autophagy. To test for causal links, we induced protein accumulation in cultured cardiomyocytes by inhibiting proteasome activity, finding that aggregation of polyubiquitinated proteins was sufficient to induce cardiomyocyte autophagy. Furthermore, attenuation of autophagic activity dramatically enhanced both aggresome size and abundance, consistent with a role for autophagic activity in protein aggregate clearance. CONCLUSIONS: We conclude that protein aggregation is a proximal trigger of cardiomyocyte autophagy and that autophagic activity functions to attenuate aggregate/aggresome formation in heart. Findings reported here are the first to demonstrate that protein aggregation occurs in response to hemodynamic stress, situating pressure-overload heart disease in the category of proteinopathies.


Subject(s)
Heart Diseases/physiopathology , Myocytes, Cardiac/cytology , Proteins/physiology , Ubiquitin/metabolism , Animals , Animals, Newborn , Autophagy , Cells, Cultured , Chymotrypsin/metabolism , Genes, Reporter , Heart Diseases/pathology , Heart Failure/etiology , Heart Failure/physiopathology , Heart Ventricles/cytology , Male , Mice , Mice, Inbred C57BL , Myocytes, Cardiac/physiology , Pressure , Proteins/chemistry , Rats , Rats, Sprague-Dawley , Transfection , Ventricular Function
19.
J Clin Invest ; 117(7): 1782-93, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17607355

ABSTRACT

Cardiac hypertrophy is a major predictor of heart failure and a prevalent disorder with high mortality. Little is known, however, regarding mechanisms governing the transition from stable cardiac hypertrophy to decompensated heart failure. Here, we tested the role of autophagy, a conserved pathway mediating bulk degradation of long-lived proteins and cellular organelles that can lead to cell death. To quantify autophagic activity, we engineered a line of "autophagy reporter" mice and confirmed that cardiomyocyte autophagy can be induced by short-term nutrient deprivation in vivo. Pressure overload induced by aortic banding induced heart failure and greatly increased cardiac autophagy. Load-induced autophagic activity peaked at 48 hours and remained significantly elevated for at least 3 weeks. In addition, autophagic activity was not spatially homogeneous but rather was seen at particularly high levels in basal septum. Heterozygous disruption of the gene coding for Beclin 1, a protein required for early autophagosome formation, decreased cardiomyocyte autophagy and diminished pathological remodeling induced by severe pressure stress. Conversely, Beclin 1 overexpression heightened autophagic activity and accentuated pathological remodeling. Taken together, these findings implicate autophagy in the pathogenesis of load-induced heart failure and suggest it may be a target for novel therapeutic intervention.


Subject(s)
Adaptation, Biological , Autophagy , Heart Diseases/pathology , Myocardium/pathology , Animal Feed , Animals , Aorta/metabolism , Aorta/surgery , Apoptosis Regulatory Proteins , Beclin-1 , Biomarkers , Cell Line , Heterozygote , Lysosomes/metabolism , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Microscopy, Electron, Transmission , Myocardium/metabolism , Proteins/genetics , Proteins/metabolism , Rats
20.
Genesis ; 40(3): 139-45, 2004 Nov.
Article in English | MEDLINE | ID: mdl-15493015

ABSTRACT

Vascular endothelial cells are structurally and functionally heterogeneous. However, the molecular basis of this heterogeneity remains poorly defined. We used subtractive and differential screening to identify genes that exhibit heterogeneous expression patterns among vascular endothelial cells. One such gene is cellular retinol binding protein III (CRBP-III/Rbp7). Analysis of the lacZ knockin line for this gene (CRBP-III:lacZ) revealed a novel organ-specific vascular endothelial expression pattern. LacZ was expressed in vascular endothelial cells in heart, skeletal muscle, adipose tissues, thymus, and salivary gland. However, it was not detected in other tissues such as brain, liver, and lung. Furthermore, the expression within each organ was primarily restricted to small capillary endothelial cells, but could not be detected in larger vessels. This organ-specific vascular endothelial expression of CRPB:lacZ is relatively resistant to the changes of organ microenvironment. However, the level of expression can be modified by vitamin A deficiency. Therefore, our results provide novel molecular evidence for the heterogeneity of vascular endothelial cells.


Subject(s)
Endothelium, Vascular/metabolism , Gene Expression Regulation , Lac Operon/physiology , Neovascularization, Physiologic/genetics , Retinol-Binding Proteins/physiology , Animals , Capillaries/metabolism , Crosses, Genetic , Female , Heart/physiology , Humans , Lac Operon/genetics , Liver/metabolism , Male , Mice , Mice, Transgenic , Organ Specificity , Retinol-Binding Proteins/genetics , Retinol-Binding Proteins, Cellular , Subtraction Technique , Tissue Distribution , Vascular Endothelial Growth Factor A/metabolism , Vitamin A Deficiency , beta-Galactosidase/metabolism
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