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1.
RNA ; 29(12): 1896-1909, 2023 12.
Article in English | MEDLINE | ID: mdl-37793790

ABSTRACT

The characterization of the conformational landscape of the RNA backbone is rather complex due to the ability of RNA to assume a large variety of conformations. These backbone conformations can be depicted by pseudotorsional angles linking RNA backbone atoms, from which Ramachandran-like plots can be built. We explore here different definitions of these pseudotorsional angles, finding that the most accurate ones are the traditional η (eta) and θ (theta) angles, which represent the relative position of RNA backbone atoms P and C4'. We explore the distribution of η - θ in known experimental structures, comparing the pseudotorsional space generated with structures determined exclusively by one experimental technique. We found that the complete picture only appears when combining data from different sources. The maps provide a quite comprehensive representation of the RNA accessible space, which can be used in RNA-structural predictions. Finally, our results highlight that protein interactions lead to significant changes in the population of the η - θ space, pointing toward the role of induced-fit mechanisms in protein-RNA recognition.


Subject(s)
Proteins , RNA , RNA/genetics , RNA/chemistry , Proteins/chemistry , Nucleic Acid Conformation
2.
Environ Sci Pollut Res Int ; 30(52): 113055-113067, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37848795

ABSTRACT

Black wattle (Acacia mearnsii De Wild.) barks are residues produced by tannin industries in huge quantities, which are normally discharged on environmental or used for energy production. Therefore, this study aimed to evaluate the use of black wattle bark residues as a raw material on obtaining of a rich-cellulose material by alkaline (MET1), acetosolv (MET2), and organosolv (MET3) procedures. The results obtained indicated that the alkaline methodology, followed by a bleaching step (MET1), promoted klason lignin and hemicellulose removals more efficiently. It was possible to observe that better results were achieved using NaOH concentration of 6% (wt%), at 65 °C for 2.5 h, presenting a yield of 63.24 ± 1.25%, and a reduction on klason lignin content of almost 90.45%. Regarding the bleaching step, it was possible to obtain a material free of non-cellulosic compounds with a yield of 78.28 ± 1.48%. Thermogravimetric analysis indicated the removal of lignin and hemicellulose as well as an increase in cellulose degradation temperature, due to changes in crystalline phases. According to X-ray diffraction (XRD), the procedures employed have led to an increase in crystallinity from 66.27 to 91.78% due to the removal of non-cellulosic compounds. Scanning electron microscopy (SEM) showed morphological alterations in accordance with the removal of non-cellulosic compounds.


Subject(s)
Acacia , Cellulose , Animals , Cellulose/chemistry , Lignin/metabolism , Acacia/chemistry , Plant Bark/chemistry , Comb and Wattles/metabolism
3.
Molecules ; 28(10)2023 May 12.
Article in English | MEDLINE | ID: mdl-37241806

ABSTRACT

The food industry is responsible for the generation of large amounts of organic residues, which can lead to negative environmental and economic impacts when incorrectly disposed of. The jaboticaba peel is an example of organic waste, widely used in industry due to its organoleptic characteristcs. In this study, residues collected during the extraction of bioactive compounds from jaboticaba bark (JB) were chemically activated with H3PO4 and NaOH and used to develop a low-cost adsorbent material for the removal of the cationic dye methylene blue (MB). For all adsorbents, the batch tests were carried out with the adsorbent dosage of 0.5 g L-1 and neutral pH, previously determined by 22 factorial design. In the kinetics tests, JB and JB-NaOH presented a fast adsorption rate, reaching equilibrium in 30 min. For JB-H3PO4, the equilibrium was reached in 60 min. JB equilibrium data were best represented by the Langmuir model and JB-NaOH and JB-H3PO4 data by the Freundlich model. The maximum adsorption capacities from JB, JB-NaOH, and JB-H3PO4 were 305.81 mg g-1, 241.10 mg g-1, and 122.72 mg g-1, respectively. The results indicate that chemical activations promoted an increase in the volume of large pores but interacted with functional groups responsible for MB adsorption. Therefore, JB has the highest adsorption capacity, thus presenting as a low-cost and sustainable alternative to add value to the product, and it also contributes to water decontamination studies, resulting in a zero-waste approach.

4.
Foods ; 12(8)2023 Apr 19.
Article in English | MEDLINE | ID: mdl-37107487

ABSTRACT

The harmful effects on the environment caused by the indiscriminate use of synthetic plastics and the inadequate management of post-consumer waste have given rise to efforts to redirect this consumption to bio-based economic models. In this sense, using biopolymers to produce materials is a reality for food packaging companies searching for technologies that allow these materials to compete with those from synthetic sources. This review paper focused on the recent trends in multilayer films with the perspective of using biopolymers and natural additives for application in food packaging. Firstly, the recent developments in the area were presented concisely. Then, the main biopolymers used (gelatin, chitosan, zein, polylactic acid) and main methods for multilayer film preparation were discussed, including the layer-by-layer, casting, compression, extrusion, and electrospinning methods. Furthermore, we highlighted the bioactive compounds and how they are inserted in the multilayer systems to form active biopolymeric food packaging. Furthermore, the advantages and drawbacks of multilayer packaging development are also discussed. Finally, the main trends and challenges in using multilayer systems are presented. Therefore, this review aims to bring updated information in an innovative approach to current research on food packaging materials, focusing on sustainable resources such as biopolymers and natural additives. In addition, it proposes viable production routes for improving the market competitiveness of biopolymer materials against synthetic materials.

5.
Reprod Domest Anim ; 58(6): 785-792, 2023 Jun.
Article in English | MEDLINE | ID: mdl-36964927

ABSTRACT

This study evaluated the effect of sperm concentration of boar semen doses, for intrauterine artificial insemination (IUAI), on semen quality and established concentration limits for their production. Twenty ejaculates from four crossbred mature PIC® boars were collected to produce 50 mL semen doses in a split sample, reaching the following sperm concentrations: ~20, 30, 60, and 100 × 106 cells/mL. Doses were produced using Androstar® Plus, stored at 17°C, and evaluated until 120 h of storage. There was a linear decrease in sperm motility as the sperm concentration increased (p linear < .01). The concentration which no longer affected the total and progressive motility was 59 and 55 × 106 cells/mL, respectively (corresponding to 71% and 62%, respectively). The pH linearly decreased as the sperm concentration increased (p < .01); yet, at 72 and 120 h, the parameter dramatically reduced in boar semen doses with 60 and 100 × 106 cells/mL. The percentage of cells with intact plasma and acrosomal membranes or with high mitochondrial membrane potential was not influenced by the sperm concentration (p ≥ .15). In conclusion, sperm motility was negatively affected in highly (60 and 100 × 106 cells/mL) concentrated doses. To achieve suitable sperm motility, boar semen doses may not surpass the sperm concentration of 55 × 106 cells/mL. The effect of low-concentrated boar semen doses on sperm quality still needs to be better evaluated, mainly considering the influence of extender type and thermo-resistance conditions.


Subject(s)
Semen Preservation , Semen , Swine , Male , Animals , Semen Analysis/veterinary , Sperm Motility , Spermatozoa , Semen Preservation/veterinary , Insemination , Insemination, Artificial/veterinary
6.
Environ Sci Pollut Res Int ; 30(18): 52472-52484, 2023 Apr.
Article in English | MEDLINE | ID: mdl-36840883

ABSTRACT

In this study, the Sphagnum perichaetiale Hampe biomass was collected, characterized, and used as a biosorbent in the removal of crystal violet from water. The chemical and morphological results suggest that even after minimal experimental procedures, the biomass presented interesting properties regarding the adsorption of contaminants. Results of adsorption showed that the pH was not a relevant parameter and the best adsorbent dosage was 0.26 g L-1. The kinetic results presented an initial fast step and the equilibrium was reached after 180 min. For the equilibrium data, the best adjustment occurred for the Sips model, reaching a maximum adsorption capacity of 271.05 mg g-1 and the removal percentage obtained in the maximum adsorbent dosage was 97.11%. The thermodynamic studies indicated a reversible process and that the mass-transfer phenomena is governed by the physisorption mechanism. In addition to its great performance as a biosorbent, Sphagnum perichaetiale biomass also presents economic and sustainable benefits, as its production does not require costs with reagents or energy, usually used in chemical and physical activation. The reversible process indicated that the biosorbent could be reused, decreasing the costs related to the treatment of the effluents. Thus, Sphagnum perichaetiale biomass can be considered an efficient low-cost and eco-friendly biosorbent.


Subject(s)
Sphagnopsida , Water Pollutants, Chemical , Adsorption , Gentian Violet , Biomass , Water Pollutants, Chemical/analysis , Kinetics , Hydrogen-Ion Concentration , Thermodynamics
7.
Polymers (Basel) ; 14(24)2022 Dec 13.
Article in English | MEDLINE | ID: mdl-36559823

ABSTRACT

This work focused on developing an active bilayer film based on natural extract. Thus, the jaboticaba peel extract (JPE) was produced and characterized and showed promising application as a natural additive in biopolymeric materials. The zein fiber and bilayer films were produced using a chitosan film (casting) and zein fiber (electrospinning), with and without JPE. All samples were evaluated according to thickness, solubility in water, water vapor permeability, and main diameter, and for these, zein fiber, chitosan/zein fiber, and chitosan/zein fiber + 3% JPE showed values of 0.19, 0.51, and 0.50 mm, 36.50, 12.96, and 27.38%, 4.48 × 10-9, 1.6 × 10-10, and 1.58 × 10-10 (g m-1 Pa-1 s-1), and 6.094, 4.685, and 3.620 µm, respectively. These results showed that the addition of a second layer improved the barrier properties of the material when compared to the monolayer zein fiber. The thermal stability analysis proved that the addition of JPE also improved this parameter and the interactions between the components of the zein fiber and bilayer films; additionally, the effective presence of JPE was shown through FTIR spectra. In the end, the active potential of the material was confirmed by antimicrobial analysis since the bilayer film with JPE showed inhibition halos against E. coli and S. aureus.

8.
Molecules ; 27(20)2022 Oct 13.
Article in English | MEDLINE | ID: mdl-36296468

ABSTRACT

The study of the recovery of bioactive compounds from natural resources and its implications in several areas is very significant for the scientific community. This work aimed to study Brazilian agroindustrial wastes' antioxidant and antimicrobial activities using green extraction. Olive leaves, jaboticaba peel, araçá peel, and pecan nut shells were evaluated under four conditions: (1) convective-drying and aqueous extraction, (2) convective-drying and ethanolic extraction, (3) freeze-drying and aqueous extraction, and (4) freeze-drying and ethanolic extraction. The results demonstrated that all samples showed high antioxidant potential, and the highest antioxidant activity was obtained for the extract of pecan nut shell. As for the quantification of compounds by HPLC, the olive leaf presented the highest content of phenolic compounds in the extract, mainly oleuropein. Finally, the antimicrobial activity analysis revealed the extracts' bactericidal potential against Staphylococcus aureus and Escherichia coli. The present study shows that green extraction can extract bioactive compounds with antioxidant and antimicrobial properties, highlighting the importance of choosing the drying method and solvent for future uses of these natural resources by the industry.


Subject(s)
Anti-Infective Agents , Antioxidants , Antioxidants/pharmacology , Antioxidants/analysis , Plant Extracts/pharmacology , Brazil , Anti-Infective Agents/pharmacology , Anti-Bacterial Agents/pharmacology , Solvents
9.
Biomolecules ; 11(12)2021 12 13.
Article in English | MEDLINE | ID: mdl-34944513

ABSTRACT

In the search for new biodegradable materials and greater microbiological safety and stability of perishable food products, this study aimed to develop a bioplastic antibacterial film incorporating bacteriocin for application in commercial curd cheese and monitoring of microbiological stability. Films with good handling characteristics as well as physical, barrier, and mechanical properties were obtained. Regarding the antibacterial activity, the microbial reduction was demonstrated in a food matrix, obtaining a reduction of 3 logarithmic cycles for the group of coagulase positive staphylococci and from 1100 to <3.00 MPN/g in the analysis of thermotolerant coliforms. Therefore, the film presented food barrier characteristics with the external environment and adequate migration of the antibacterial compound to the product, contributing to the reduction of contamination of a food with high initial microbial load.


Subject(s)
Agar/chemistry , Anti-Bacterial Agents/pharmacology , Bacteriocins/pharmacology , Food Packaging/methods , Latilactobacillus sakei/chemistry , Anti-Bacterial Agents/chemistry , Bacteriocins/chemistry , Cheese/microbiology , Coagulase/metabolism , Food Contamination/prevention & control , Food Handling , Food Technology , Microbial Sensitivity Tests , Staphylococcus/enzymology
10.
Materials (Basel) ; 14(22)2021 Nov 12.
Article in English | MEDLINE | ID: mdl-34832222

ABSTRACT

The lack of adequate treatment for the removal of pollutants from domestic, hospital and industrial effluents has caused great environmental concern. Therefore, there is a need to develop materials that have the capacity to treat these effluents. This work aims to develop and characterize an activated charcoal from olive pomace, which is an agro-industrial residue, for adsorption of Nimesulide in liquid effluent and to evaluate the adsorption kinetics and equilibrium using experimental design. The raw material was oven dried at 105 °C for 24 h, ground, chemically activated in a ratio of 1:0.8:0.2 of olive pomace, zinc chloride and calcium hydroxide and thermally activated by pyrolysis in a reactor of stainless steel at 550 °C for 30 min. The activated carbon was characterized by Fourier Transform Infrared (FTIR) spectroscopy, X-ray Diffractometry (XRD), Brunauer, Emmett and Teller (BET) method, Thermogravimetric Analysis (TGA), Scanning Electron Microscopy (SEM), density and zero charge potential analysis. The surface area obtained was 650.9 m2 g-1. The kinetic and isothermal mathematical models that best described the adsorption were PSO and Freundlich and the highest adsorption capacity obtained was 353.27 mg g-1. The results obtained showed the good performance of activated carbon produced from olive pomace as an adsorbent material and demonstrated great potential for removing emerging contaminants such as Nimesulide.

11.
Int J Mol Sci ; 22(19)2021 Sep 30.
Article in English | MEDLINE | ID: mdl-34638967

ABSTRACT

The objective of this work was to develop a chitosan/agar-agar bioplastic film incorporated with bacteriocin that presents active potential when used as food packaging. The formulation of the film solution was determined from an experimental design, through the optimization using the desirability function. After establishing the concentrations of the biopolymers and the plasticizer, the purified bacteriocin extract of Lactobacillus sakei was added, which acts as an antibacterial agent. The films were characterized through physical, chemical, mechanical, barrier, and microbiological analyses. The mechanical properties and water vapor permeability were not altered by the addition of the extract. The swelling property decreased with the addition of the extract and the solubility increased, however, the film remained intact when in contact with the food, thus allowing an efficient barrier. Visible light protection was improved by increased opacity and antibacterial capacity was effective. When used as Minas Frescal cream cheese packaging, it contributed to the increase of microbiological stability, showing a reduction of 2.62 log UFC/g, contributing a gradual release of the active compound into the food during the storage time. The film had an active capacity that could be used as a barrier to the food, allowing it to be safely packaged.


Subject(s)
Anti-Bacterial Agents/chemistry , Bacteriocins/chemistry , Biodegradable Plastics/chemistry , Biopolymers/chemistry , Food Packaging/methods , Agar/chemistry , Biocompatible Materials/chemistry , Cheese/microbiology , Chitosan/chemistry , Hot Temperature , Latilactobacillus sakei/chemistry , Latilactobacillus sakei/drug effects , Microbial Sensitivity Tests , Permeability , Plant Extracts/chemistry , Plasticizers/chemistry , Rhodophyta/chemistry , Solubility , Steam
12.
Rev. Bras. Odontol. Leg. RBOL ; 8(2): 93-104, 20210927.
Article in Portuguese | LILACS-Express | LILACS | ID: biblio-1436832

ABSTRACT

Introdução: A COVID-19 é uma enfermidade respiratória causada pelo vírus SARS-CoV-2, detectado pela primeira vez em Wuhan - China em dezembro de 2019. Atualmente, está bem definido que esse vírus possui alta e sustentada transmissibilidade entre as pessoas. Em decorrência do aumento da infecção humana pelo novo coronavírus e com o eminente risco de contágio e propagação da doença, iniciaram-se as medidas de prevenção e controle de infecção através da publicação de dispositivos legais com o objetivo de orientar os serviços de saúde e conter a disseminação do vírus. Sabe-se que a assistência odontológica apresenta alto risco para a disseminação do coronavírus e, por esse motivo, tornou-se de suma importância que os profissionais que atuam nos serviços de saúde estejam munidos de informações para evitar ou reduzir ao máximo a transmissão de microrganismos durante qualquer assistência realizada. Objetivo: Apontar, por meio de uma revisão de literatura, a evolução das normativas éticas e legais relacionadas ao exercício da odontologia frente à pandemia da COVID-19 no Brasil. Revisão Da Literatura: Foram verificados dispositivos legais publicados durante o período de pandemia com repercussão sobre a Odontologia nas esferas nacional, com ênfase para questões sanitárias e de fiscalização do exercício profissional, além de uma orientação associativa. Conclusão: As normativas publicadas até a presente data, que se relacionam ao exercício profissional, destacam a importância de os cirurgiões-dentistas manterem-se atualizados sobre estes aspectos para o exercício profissional, ressaltando, ainda, que novas orientações e atualizações podem ser feitas sobre esta pandemia.


INTRODUCTION: COVID-19 is a respiratory disease caused by the SARS-CoV-2 virus, first detected in Wuhan - China in December 2019. Currently, it is well defined that this virus has a high and sustained transmissibility between humans. As a result of the increase of human infection by the new coronavirus and the imminent risk of contagion and spread of the disease, measures of prevention and control of the infection were initiated through the publication of several regulations aiming to guide and contain the spread of the virus. Due to the high risk of dissemination of the coronavirus associated with dental care, it has become extremely important to provide information to avoid or reduce, as much as possible, the transmission of microorganisms during any assistance performed. OBJECTIVE: To point out, through a literature review, the evolution of ethical and legal regulations related to the practice of dentistry in view of the COVID-19 pandemic in Brazil. LITERATURE REVIEW: Legal provisions published during the pandemic period with repercussions on Dentistry were examined, in national level, focusing on sanitary issues and supervision of professional practice, in addition to an associative orientation. CONCLUSION: The regulations published to date, which relate to professional practice, highlight the importance of dentists keeping up-to-date on these aspects for professional practice, also emphasizing that new guidelines and updates can be made about this pandemic

13.
Imaging Sci Dent ; 51(2): 187-193, 2021 Jun.
Article in English | MEDLINE | ID: mdl-34235064

ABSTRACT

PURPOSE: This study aimed to assess the usefulness of machine learning and automation techniques to match pairs of panoramic radiographs for personal identification. MATERIALS AND METHODS: Two hundred panoramic radiographs from 100 patients (50 males and 50 females) were randomly selected from a private radiological service database. Initially, 14 linear and angular measurements of the radiographs were made by an expert. Eight ratio indices derived from the original measurements were applied to a statistical algorithm to match radiographs from the same patients, simulating a semi-automated personal identification process. Subsequently, measurements were automatically generated using a deep neural network for image recognition, simulating a fully automated personal identification process. RESULTS: Approximately 85% of the radiographs were correctly matched by the automated personal identification process. In a limited number of cases, the image recognition algorithm identified 2 potential matches for the same individual. No statistically significant differences were found between measurements performed by the expert on panoramic radiographs from the same patients. CONCLUSION: Personal identification might be performed with the aid of image recognition algorithms and machine learning techniques. This approach will likely facilitate the complex task of personal identification by performing an initial screening of radiographs and matching ante-mortem and post-mortem images from the same individuals.

14.
Int J Med Inform ; 153: 104532, 2021 09.
Article in English | MEDLINE | ID: mdl-34298425

ABSTRACT

BACKGROUND: The eHealth Literacy Scale (eHEALS) has become a standard tool for the evaluation of digital health literacy. OBJECTIVES: This study aims to examine the validity and reliability of the Brazilian version of the eHEALS in a sample of patients from a dental clinic setting. MATERIAL AND METHODS: A cross-sectional survey was conducted in a dental setting. The sample included patients from the Dental Clinic of the Dentistry School of the University of São Paulo between September 2019 and March 2020. The underlying structure of the data was exploratorily investigated using Exploratory Graph Analysis, a network analysis method. The internal reliability was assessed using the McDonald's Omega coefficient. Confirmatory Factor Analysis (CFA) was used to assess the fit of the structure identified by the network analysis. Convergent validity was assessed using the Average Variance Extracted, and measurement invariance was examined using nested models in multigroup CFA. Criterion-related validity was examined calculating the latent mean differences between subgroups (genders, age groups, and educational levels). RESULTS: The sample included 132 adults aged 18 to 82 years (mean 44.7 years). The eHEALS network indicated that items form a single-factor structure. The 1-factor model presented adequate fit (χ2 (18) = 29.873, p < 0.039; R-CFI = 0.997; R-TLI = 0.996; R-RMSEA = 0.032, 90% CI [0.000, 0.052]), good internal reliability, and convergent validity. Configural invariance was found for genders, educational levels, and age groups. Scalar invariance was observed for genders and age, whereas partial scalar invariance was confirmed for education. Participants aged 18 to 45 and those with higher education presented greater latent means for eHEALS subscales. There were no differences between genders. CONCLUSION: The BR-eHEALS presented good internal reliability, convergent validity, measurement invariance, and was able to discriminate the levels of eHealth literacy among groups with different ages and educational levels. These findings demonstrate that the tool is valid and reliable for use in a dental setting with the Brazilian population.


Subject(s)
Health Literacy , Telemedicine , Adult , Cross-Sectional Studies , Dental Clinics , Female , Humans , Male , Psychometrics , Reproducibility of Results , Surveys and Questionnaires
15.
Rev. Bras. Odontol. Leg. RBOL ; 8(1): [66-77], 20210427.
Article in Portuguese | LILACS | ID: biblio-1281477

ABSTRACT

Após o surgimento do Código de Defesa do Consumidor, a Odontologia passou por modificações jurídicas, fornecendo condições aos pacientes para cobrarem do profissional o cumprimento de suas obrigações. O objetivo do estudo foi analisar as decisões em primeira instância de processos julgados na área de Odontologia no ano de 2019 no Tribunal de Justiça de São Paulo (TJ-SP) em relação ao tempo de processo, especialidade do procedimento, tipo de pessoa requerida, tipo de justiça, classe do processo, realização de perícia, posicionamento do magistrado em relação ao laudo, tipo de obrigação estabelecida no processo, responsabilidade civil, pedido de reconvenção, e decisão judicial. Foi utilizado o acesso ao banco de sentenças do TJ-SP com os seguintes descritores no campo de busca: "dentista" e "responsabilidade profissional". Foram encontradas 234 sentenças. O tempo máximo entre o início do processo e o julgamento foi de 17 anos e o tempo mínimo, de 1 ano. A Implantodontia foi a especialidade mais processada (42,3%), e o dano moral foi a classe processual mais solicitada (29,9%). Em 75,6% das sentenças, a realização da perícia foi solicitada e, destes, em 70,9% dos casos o magistrado se embasou nas informações fornecidas no laudo para determinar sua sentença. A obrigação de resultado foi a mais associada à Odontologia pelos Magistrados, com estabelecimento da responsabilidade civil em 140 sentenças. Dessa forma, ressalta-se a importância do laudo pericial, visto que este atua de modo a esclarecer o magistrado, e consequentemente, se torna um fator essencial para guiar a decisão judicial.


Subject(s)
Humans , Male , Female , Damage Liability , Forensic Dentistry
16.
Biophys Rev ; 13(6): 995-1005, 2021 Dec.
Article in English | MEDLINE | ID: mdl-35059023

ABSTRACT

The structure of B-DNA, the physiological form of the DNA molecule, has been a central topic in biology, chemistry and physics. Far from uniform and rigid, the double helix was revealed as a flexible and structurally polymorphic molecule. Conformational changes that lead to local and global changes in the helix geometry are mediated by a complex choreography of base and backbone rearrangements affecting the ability of the B-DNA to recognize ligands and consequently on its functionality. In this sense, the knowledge obtained from the sequence-dependent structural properties of B-DNA has always been thought crucial to rationalize how ligands and, most notably, proteins recognize B-DNA and modulate its activity, i.e. the structural basis of gene regulation. Honouring the anniversary of the first high-resolution X-ray structure of a B-DNA molecule, in this contribution, we present the most important discoveries of the last 40 years on the sequence-dependent structural and dynamical properties of B-DNA, from the early beginnings to the current frontiers in the field.

17.
Biochimie ; 180: 229-242, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33197551

ABSTRACT

Antimicrobial peptides (AMPs) play an essential role in plant defense against invading pathogens. Due to their biological properties, these molecules have been considered useful for drug development, as novel agents in disease therapeutics, applicable to both agriculture and medicine. New technologies of massive sequencing open opportunities to discover novel AMP encoding genes in wild plant species. This work aimed to identify cysteine-rich AMPs from Peltophorum dubium, a legume tree from South America. We performed whole-transcriptome sequencing of P. dubium seedlings followed by de novo transcriptome assembly, uncovering 78 AMP transcripts classified into five families: hevein-like, lipid-transfer proteins (LTPs), alpha hairpinins, defensins, and snakin/GASA (Giberellic Acid Stimulated in Arabidopsis) peptides. No transcripts with similarity to cyclotide or thionin genes were identified. Genomic DNA analysis by PCR confirmed the presence of 18 genes encoding six putative defensins and 12 snakin/GASA peptides and allowed the characterization of their exon-intron structure. The present work demonstrates that AMP prediction from a wild species is possible using RNA sequencing and de novo transcriptome assembly, regarding a starting point for studies focused on AMP gene evolution and expression. Moreover, this study allowed the detection of strong AMP candidates for drug development and novel biotechnological products.


Subject(s)
Fabaceae/chemistry , Genes, Plant/genetics , Genome, Plant/genetics , Pore Forming Cytotoxic Proteins/genetics , Pore Forming Cytotoxic Proteins/metabolism , Seedlings/genetics , Seedlings/metabolism , Amino Acid Motifs/genetics , Models, Molecular , Plant Proteins/genetics , Plant Proteins/metabolism , Pore Forming Cytotoxic Proteins/classification , Sequence Alignment , Transcriptome
18.
Biochemistry ; 59(44): 4225-4237, 2020 11 10.
Article in English | MEDLINE | ID: mdl-33135877

ABSTRACT

Cationic amino acid transporters (CATs) supply cells with essential and semiessential dibasic amino acids. Among them, l-arginine is the substrate for nitric oxide synthases (NOS) to produce nitric oxide (NO), a key signaling molecule and second messenger. In cardiac preparations, we showed that NO acutely and directly modulates transport activity by noncompetitively inhibiting these CATs. We hypothesize that this NO regulation occurs through modification of cysteine residues in CAT proteins. Homology modeling and a computational chemistry approach identified Cys347 as one of two putative targets for NO binding, of 15 Cys residues present in the low-affinity mouse CAT-2A (mCAT-2A). To test this prediction, mammalian cell lines overexpressing mCAT-2A were used for site-directed mutagenesis and uptake studies. When Cys347 was replaced with alanine (Cys347Ala), mCAT-2A became insensitive to inhibition by NO donors. In addition, the transport capacity of this variant decreased by >50% compared to that of the control, without affecting membrane expression levels or apparent affinities for the transported amino acids. Interestingly, replacing Cys347 with serine (Cys347Ser) restored uptake levels to those of the control while retaining NO insensitivity. Other Cys residues, when replaced with Ala, still produced a NO-sensitive CAT-2A. In cells co-expressing NOS and mCAT-2A, exposure to extracellular l-arginine inhibited the uptake activity of control mCAT-2A, via NO production, but not that of the Cys347Ser variant. Thus, the -SH moiety of Cys347 is largely responsible for mCAT-2A inhibition by NO. Because of the endogenous NO effect, this modulation is likely to be physiologically relevant and a potential intervention point for therapeutics.


Subject(s)
Cationic Amino Acid Transporter 2/metabolism , Nitric Oxide/metabolism , Animals , Biological Transport , COS Cells , Cationic Amino Acid Transporter 2/chemistry , Chlorocebus aethiops , HeLa Cells , Humans , Mice , Models, Molecular , Protein Conformation , Signal Transduction
19.
Environ Sci Pollut Res Int ; 26(28): 28603-28613, 2019 Oct.
Article in English | MEDLINE | ID: mdl-30547339

ABSTRACT

The aim of this work was to characterize the coal fly ash from gasification process (G-CFA) and to analyze its potential as hexavalent chromium Cr (VI) adsorbent. The G-CFA was characterized in terms of physical, chemical, mineralogical, and morphological analyses. Bach adsorption studies were carried out in order to evaluate the influence of pH on the adsorption capacity and removal efficiency of Cr (VI). The G-CFA characterization demonstrated that the material possessed potential to be applied as an effective low-cost adsorbent, once it presents 18.82 m2 g-1, 0.036 cm3 g-1, and 7.56 nm of surface area, pore volume, and average pore diameter, respectively. The results also showed well-defined mineralogical phases and high content of siliceous material. The adsorption experiments demonstrated that the material has potential to be used as a chromium adsorbent with high removal efficiencies.


Subject(s)
Chromium/chemistry , Coal Ash/analysis , Adsorption , Coal , Coal Ash/chemistry , Kinetics
20.
Eur J Dent ; 10(2): 170-175, 2016.
Article in English | MEDLINE | ID: mdl-27095891

ABSTRACT

OBJECTIVES: The present study verified the influence of whitening dentifrices on the surface roughness of a nanohybrid composite resin. MATERIALS AND METHODS: Thirty-two specimens were prepared with Filtek™ Z350 XT (3M/ESPE) and randomly divided into four groups (n = 08) that were subjected to brushing simulation equivalent to the period of 1 month. The groups assessed were a control group with distilled water (G1), Colgate Total 12 Professional Clean (G2), Sensodyne Extra Whitener Extra Fresh (G3), and Colgate Luminous White (G4). A sequence of 90 cycles was performed for all the samples. The initial roughness of each group was analyzed by the Surface Roughness Tester (TR 200-TIME Group Inc., CA, USA). After the brushing period, the final roughness was measured, and the results were statistically analyzed using nonparametric Kruskal-Wallis and Dunn tests for intergroup roughness comparison in the time factor. For intragroup and "Δ Final - Initial" comparisons, the Wilcoxon test and (one-way) ANOVA were, respectively, performed (α = 0.05). RESULTS: The roughness mean values before and after brushing showed no statistically significant difference when the different dentifrices were used. None of the dentifrices analyzed increased significantly the nanohybrid composite resin surface roughness in a 1 month of tooth brushing simulation. CONCLUSIONS: These results suggest that no hazardous effect on the roughness of nanohybrid composite resin can be expected when whitening dentifrices are used for a short period. Similar studies should be conducted to analyze other esthetic composite materials.

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