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1.
J Mol Model ; 28(8): 239, 2022 Jul 30.
Article in English | MEDLINE | ID: mdl-35908141

ABSTRACT

Plants from the Garcinia genus have been used worldwide due to their therapeutic properties. Among the various metabolites isolated from this genus, 7-epi-clusianone, a tetraprenylated benzophenone, stands out for its wide range of identified biological activities. This benzophenone can exist in five tautomeric forms, although the benzene-d6 and chloroform-d3 solution nuclear magnetic resonance (NMR) spectra revealed only two tautomeric forms (B and C) in equilibrium, with concentration ratio depending on the solvent in which the spectrum was obtained. Calculated energy values suggested that tautomeric forms B and E would be prevalent in benzene-d6 solution, in contrast to the experimental data. Considering this conflicting result, we employed the statistical DP4 + method based on 13C and 1H NMR chemical shift calculations, in the gas phase and in benzene-d6 solution, to confirm that the B and C tautomeric forms of 7-epi-clusianone are the most prevalent in the experimental conditions.


Subject(s)
Benzene , Benzophenones , Benzoquinones , Magnetic Resonance Spectroscopy , Models, Theoretical , Molecular Conformation
2.
Magn Reson Chem ; 60(4): 434-441, 2022 04.
Article in English | MEDLINE | ID: mdl-34741339

ABSTRACT

Recently, structural elucidation of natural products has undergone a revolution. The combined use of different modern spectroscopic methods has allowed obtaining a complete structural assignment of natural products using small amounts of sample. However, despite the extraordinary ongoing advances in spectroscopy, the mischaracterization of natural products has been and remains a recurrent problem, especially when the substance presents several stereogenic centers. The misinterpretation of nuclear magnetic resonance (NMR) data has resulted in frequent reports addressing structural reassignment. In this context, a great effort has been devoted to developing quantum chemical calculations that simulate NMR parameters accurately, allowing to achieve a more precise spectral interpretation. In this work, we employed a protocol for theoretical calculations of 1 H NMR chemical shifts and coupling constants using density functional theory (DFT), followed by the application of the DP4+ method to revisit the structure of Heliannuol L, a member of the Heliannuol class, isolated from Helianthus annuus. Our results indicate that the originally proposed structure of Heliannuol L needs a stereochemical reassignment, placing the hydroxyl bonded to C10 in the opposite side of the methyl and hydroxyl groups bonded to C7 and C8, respectively.


Subject(s)
Biological Products , Biological Products/chemistry , Magnetic Resonance Spectroscopy/methods , Molecular Structure
3.
J Nat Prod ; 78(11): 2617-23, 2015 Nov 25.
Article in English | MEDLINE | ID: mdl-26565920

ABSTRACT

(-)-Centratherin is a bioactive sesquiterpenoid lactone, whose absolute configuration (AC) was not established, but has been proposed based on those of germacrane precursors. To verify this proposal, the experimental electronic circular dichroism (ECD), electronic dissymmetry factor (EDF), optical rotatory dispersion (ORD), vibrational circular dichroism (VCD), and vibrational dissymmetry factor (VDF) spectra of (-)-centratherin have been analyzed with the corresponding density functional theoretical predictions. These analyses suggest the AC of naturally occurring (-)-centratherin to be (6R,7R,8S,10R,2'Z).


Subject(s)
Lactones/chemistry , Sesquiterpenes/chemistry , Circular Dichroism , Lactones/pharmacology , Models, Chemical , Molecular Structure , Nuclear Magnetic Resonance, Biomolecular , Optical Rotatory Dispersion , Sesquiterpenes/pharmacology , Stereoisomerism
4.
Molecules ; 18(11): 13520-9, 2013 Oct 31.
Article in English | MEDLINE | ID: mdl-24184821

ABSTRACT

3-Ishwarone, (1), a sesquiterpene with a rare ishwarane skeleton, was isolated from Peperomia scandens Ruiz & Pavon (Piperaceae). Its structure was unambiguously determined by 1D- and 2D-NMR and infrared analyses, as well as by comparative theoretical studies which involved calculations of 13C-NMR chemical shifts, using the Density Functional Theory (DFT) with the mPW1PW91 hybrid functional and Pople's 6-31G(d) basis set, and of vibrational frequencies, using the B3LYP hybrid functional and triple ζ Dunning's correlation consistent basis set (cc-pVTZ), of (1) and three of its possible diastereomers, compounds 2-4.


Subject(s)
Peperomia/chemistry , Sesquiterpenes/chemistry , Gas Chromatography-Mass Spectrometry , Magnetic Resonance Spectroscopy , Molecular Structure
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