Chromium removal by microbial mats: understanding the effect of salinity and pH.

Environmental contamination by chromium represents a serious public health problem. Therefore, it is crucial to develop and optimize remediation technologies to reduce its concentration in the environment. The aims of this study were to evaluate the uptake of chromium by live and complete microbial mats in experimental mesocosms under different pH and salinity conditions to understand how these factors affect the microphytobenthic community and, consequently, how chromium removal process is influenced. Microbial mats from the estuarine environment were exposed to 15 mg Cr/L under different pH (2, 4, and 8) and salinity (2, 15, and 33) conditions. Salinity, redox potential, and pH were measured throughout the trial in solutions and in microbial mats, while total Cr determinations were performed at the end of the assay. The results demonstrated that the removal efficiency of Cr by microbial mats was significantly improved in solutions at pH 2, remaining unaffected by variations in salinity. Notably, both cyanobacteria and diatoms showed remarkable resistance to Cr exposure under all conditions tested, highlighting their exceptional adaptability. Microbial mats have proved to be effective filters for reducing the concentration of chromium in aqueous solutions with varying pH and salinity levels.

Transcriptomic analysis of Chaetoceros muelleri in response to different nitrogen concentrations reveals the activation of pathways to enable efficient nitrogen uptake.

Nitrogen is the principal nutrient deficiency that increases lipids and carbohydrate content in diatoms but negatively affects biomass production. Marine diatom Chaetoceros muelleri is characterized by lipid and carbohydrate accumulation under low nitrogen concentration without affecting biomass. To elucidate the molecular effects of nitrogen concentrations, we performed an RNA-seq analysis of C. muelleri grown under four nitrogen concentrations (3.53 mM, 1.76 mM, 0.44 mM, and 0.18 mM of NaNO3). This research revealed that changes in global transcription in C. muelleri are differentially expressed by nitrogen concentration. "Energetic metabolism", "Carbohydrate metabolism" and "Lipid metabolism" pathways were identified as the most upregulated by N deficiency. Due to N limitation, alternative pathways to self-supply nitrogen employed by microalgal cells were identified. Additionally, nitrogen limitation decreased chlorophyll content and caused a greater response at the transcriptional level with a higher number of unigenes differentially expressed. By contrast, the highest N concentration (3.53 mM) recorded the lowest number of differentially expressed genes. Amt1, Nrt2, Fad2, Skn7, Wrky19, and Dgat2 genes were evaluated by RT-qPCR. In conclusion, C. muelleri modify their metabolic pathways to optimize nitrogen utilization and minimize nitrogen losses. On the other hand, the assembled transcriptome serves as the basis for metabolic engineering focused on improving the quantity and quality of the diatom for biotechnological applications. However, proteomic and metabolomic analysis is also required to compare gene expression, protein, and metabolite accumulation.

Diatom and pollen atlas dataset from the Northern Gulf of Mexico, USA.

Diatom and pollen references such as atlases and identification keys are remarkably rare from the Gulf Coast region of the United States. This dataset describes modern and fossil diatom and pollen from Galveston Bay, Texas to Cedar Keys Florida, USA. An illustrated and descriptive atlas of diatom and pollen was compiled from original data to facilitate the identification of microfossil in sediments. For diatom atlas, we include light micrographs and detailed descriptions of a total of 32 diatom species, including 9 marine diatom species, 18 estuarine diatom species, and 5 freshwater diatom species. For pollen atlas, we include light micrographs and descriptions of a total of 28 pollen and non-pollen palynomorphs, including 3 mangrove taxa, 12 upland (tree and shrub) taxa, and 10 herbaceous taxa. The diatom atlas is referenced from LSU Global Change and Coastal Paleoecology Laboratory's light micrographs collection. The pollen and diatom datasets are associated with research articles by Yao et al. [1,2].

Photochemical Reduction of Silver Nanoparticles on Diatoms.

In this work, the photochemical reduction method was used at 440 or 540 nm excitation wavelengths to optimize the deposition of silver nanoparticles on the diatom surface as a potential DNA biosensor. The as-synthesized nanocomposites were characterized by ultraviolet-visible spectroscopy (UV-Vis), Fourier transforms infrared spectroscopy (FTIR), X-ray photoelectron spectroscopy (XPS), scanning transmission electron microscopy (STEM), fluorescence microscopy, and Raman spectroscopy. Our results revealed a 5.5-fold enhancement in the fluorescence response of the nanocomposite irradiated at 440 nm with DNA. The enhanced sensitivity comes from the optical coupling of the guided-mode resonance of the diatoms and the localized surface plasmon of the silver nanoparticles interacting with the DNA. The advantage of this work involves the use of a low-cost green method to optimize the deposition of plasmonic nanoparticles on diatoms as an alternative fabrication method for fluorescent biosensors.

Preliminary assessment of microbial mats in seawater metal remediation.

Microbial mats have a special role in the removal of metals in marine environment. This study aimed to experimentally determine the efficiency of Cr removal from seawater by microbial mats. The effect of Cr on the microphytobenthic community and the influence of an aerated condition on the removal of metal and microorganisms were also considered. Hence, microbial mat samples were subdivided in 4 groups: submerged in Cr (chromium 2 mg/L without aeration), Cr + O2 (chromium 2 mg/L with aeration), SW + O2 (filtered seawater with aeration), and a control: SW (filtered seawater with neither chromium nor aeration). Water and microbial mat subsamples were used to determine Cr concentrations, organic matter content, granulometry, physicochemical parameters, chlorophyll a, phaeopigments, and quantitative analysis of the microphytobenthic community. Cr removal efficiency from seawater was 95% for the Cr treatment and 99% for the Cr + O2 treatment. The abundance of cyanobacteria tended to decrease between the initial and final days of the assay, whereas the opposite trend was observed for diatoms. Two aspects are worth noting in the paper: microbial mats efficiently removed Cr from seawater at a concentration of 2 mg Cr/L and the removal of Cr by microbial mats was more efficient with water aeration.

Catchment scale deforestation increases the uniqueness of subtropical stream communities.

Local communities and individual species jointly contribute to the overall beta diversity in metacommunities. However, it is mostly unknown whether the local contribution (LCBD) and the species contribution (SCBD) to beta diversity can be predicted by local and regional environmental characteristics and by species traits and taxonomic relatedness, respectively. We investigated the LCBD and SCBD of stream benthic diatoms and insects along a gradient of land use intensification, ranging from streams in pristine forests to agricultural catchments in southeast subtropical Brazil. We expected that the LCBD would be negatively related to forest cover and positively related to the most unique streams in terms of environmental characteristics and land use (hereafter environmental and land use uniqueness, respectively). We also expected that species with a high SCBD would occur at sites with reduced forest cover. We found that the LCBD of diatoms and insects was negatively related to forest cover. The LCBD of insects was also positively related to environmental and land use uniqueness. As forest cover was negatively related to uniqueness in land use, biologically unique streams were those that deviated from the typical regional land cover. We also found that diatom traits, insect traits, and taxonomic relatedness partly explained SCBD. Furthermore, the SCBD of diatoms was positively correlated with forest cover, but the inverse was found for insects. We showed that deforestation creates novel and unique communities in subtropical streams and that species that contribute the most to beta diversity can occur at opposite ends of a land use gradient.

Mechanical testing of particle streaming and intact extracellular mucilage nanofibers reveal a role of elastic force in diatom motility.

Diatoms are unicellular microalgae with a rigid cell wall, able to glide on surfaces by releasing nanopolymeric fibers through central slits known as raphes. Here we consider the modelNitszchia communisto perform quantitative studies on two complementary aspects involved in diatom gliding. Using video microscopy and automated image analysis, we measure the motion of test beads as they are pulled by extracellular polymeric substances (EPS) fibers at the diatom raphe (particle streaming). A multimodal distribution of particle speed is found, evidencing the appearance of short-time events of high speed and acceleration (known as jerky motion) and suggesting that different mechanisms contribute to set diatom velocity during gliding. Furthermore, we use optical tweezers to obtain force-extension records for extracellular diatom nanofibers; records are well described by the worm-like chain model of polymer elasticity. In contrast to previous studies based on application of denaturing force (in the nN regime), application of low force (up to 6 pN) and using enable us to obtain the persistence length of intact fibers. From these measurements, mechanical parameters of EPS fibers such as radius and elastic constant are estimated. Furthermore, by modeling particle streaming as a spring in parallel with a dashpot, we show that the time involved in the release of mechanical energy after fiber detachment from beads (elastic snapping) agrees with our observations of jerky motion. We conclude that the smooth and jerky motions displayed by gliding diatoms correspond to molecular motors and elastic snapping, respectively, thus providing quantitative elements that incorporate to current models of the mechanics behind diatom locomotion.

Assessment of potential reference sites for evaluating the ecological status of subtropical and temperate Brazilian lotic systems using the epilithic diatom community.

This research aimed at determining reference sites in southern Brazilian lotic systems, using the Water Quality Trophic Index (WQTI), based on epilithic diatom communities. Within the period of 2012 and 2016, 140 epilithic diatom samples from seven sampling sites within the spring area of the Andreas Stream Hydrographic Basin, Vera Cruz County, RS, Brazil, were analyzed quarterly. Similarly, from 2012 and 2014, water samples in these sampling sites were collected for determination of physicochemical and microbiological parameters, such as water temperature, pH, turbidity, dissolved oxygen, biochemical oxygen demand, nitrate, phosphate, total dissolved solids, and fecal coliforms. The results indicated the occurrence of two diatom samples groups with significant differences (p < 0.05). Group 1 (sampling sites P1, P4, and P5) was classified in the oligotrophic category with an average WQTI of 1.3 ± 0.2, while group 2 (sampling sites P2, P3, P6, and P7) was classified in the ß-mesotrophic category with an average value of 2.0 ± 0.4). Achnanthidium minutissimum and Platessa hustedtii the dominant species were classified as oligotrophic taxa. Thus, we proposed the upper limit of the first interval of the WQTI score scale, equal to 1.5, as a reference value to differentiate the limits between the "high" and "good" ecological status to determine "reference sites" for subtropical and temperate Brazilian aquatic systems. The physical, chemical, and microbiological water quality evaluation gives support to this proposal, as far as the results indicated a significant improvement in the water quality, classifying sampling sites P1, P4, and P5 as having good quality appropriate for multiple uses.

Biological index based on epiphytic diatom assemblages is more restrictive than the physicochemical index in water assessment on an Amazon floodplain, Brazil.

Canadian Water Quality Index (CWQI) provides protection for freshwater life promoting healthy ecosystems and safeguarding human health. Biological Diatom Index (BDI) was developed to indicate the ecological status and water quality of freshwater systems. This paper evaluates the relations between the two different indices. During rising and falling, water samples were taken in the Curuai Floodplain, Brazil. CWQI was calculated using 14 physicochemical parameters and 1 microbiological parameter. The limits were established according to freshwater quality conditions and standards based on water use classes 1 and 2 determined in CONAMA 357 legislation and British Columbia. Canadian Water Quality Index categorization ranged from "marginal" to "excellent," most sampling units were "good" (71%), followed by "fair" (12%) and "excellent" (12%) water quality. Total phosphorus (38 times), chlorophyll a (20), dissolved oxygen (10), and total organic carbon (10) were the parameters that presented the most non-compliance values. Encyonema silesiacum (14%), Gomphonema parvulum (13%), and Navicula cryptotenella (12%) were the main taxa in the rising period, while G. lagenula, E. silesiacum, and Fragilaria capucina were the main taxa during the falling period. BDI ranges from I to V water quality classes. We observed "poor" to "very good" ecological status, with most sampling units "moderate" (52%) and "good" (29%). Water quality for class 2 was better than water quality for class 1, as the limits of the parameters evaluated were more restrictive in class 1 than in class 2 and the predominant uses of water require a higher degree of water purity. The biological index based on diatoms was the most restrictive index whose water classes and categorizations have shown an ecological status that could threaten the protection of aquatic communities on the Curuai floodplain. We suggest the combined use of both indices-physicochemical and biological for water quality assessment in this type of environment.

Growth Kinetics of Nanofrustulum Shiloi Under Different Mixing Conditions in Flat-plate Photobioreactor

Abstract Diatoms are the major group of microalgae which have been utilized by the potential applications as food industries, aquatic feeds, cosmetics, biofuels, and pharmaceuticals. In this study, current approaches were made in order to determine growth rate, biomass productivity, protein, carbohydrate, lipid and fatty acid composition for Nanofrustulum shiloi cultures using both aeration and mixing conditions in flat-plate photobioreactor (PBR). Physical (the intensity of aeration, mixing, light intensity etc.) and chemical (nutritional materials) factors are affecting the growth and bioproduct contents of a diatom. Biomass and lipid productivities of N. shiloi were measured as 31.29 and 36.9622±0.0598 mg L-1 day-1 in flat-plate PBR having the combination of aeration and stirring system, respectively. A slightly higher amount of saturated fatty acids was detected in PBR having only bubbling system while the increase of mono- and poly- unsaturated fatty acids were found in PBR having the combination of aeration and stirring system. Flat-plate PBR design was also investigated for improving not only biomass but also the lipid productivity of N. shiloi.

Periphytic diatoms from an oligotrophic lentic system, Piraquara I reservoir, Paraná state, Brazil / Diatomáceas perifíticas de um sistema lêntico oligotrófico, reservatório do Piraquara I, estado do Paraná, Brasil

Abstract: Knowledge of biodiversity in oligotrophic aquatic ecosystems is fundamental to plan conservation strategies for protected areas. This study assessed the diatom diversity from an urban reservoir with oligotrophic conditions. The Piraquara I reservoir is located in an Environmental Protection Area and is responsible for the public supply of Curitiba city and the metropolitan region. Samples were collected seasonally between October 2007 and August 2008. Periphytic samples were obtained by removing the biofilm attached to Polygonum hydropiperoides stems and to glass slides. The taxonomic study resulted in the identification of 87 diatom taxa. The most representative genera regarding the species richness were Pinnularia (15 species) and Eunotia (14 species). Five species were registered for the first time in Brazil and seven in the State of Paraná. Taxonomic and ecological comments of the species registered are provided.

Resumo: O conhecimento da biodiversidade em ecossistemas aquáticos oligotróficos é fundamental para planejar estratégias de conservação de áreas protegidas. Este estudo teve como objetivo conhecer a diversidade de diatomáceas em um reservatório urbano com condições oligotróficas. O reservatório do Piraquara I está inserido em uma Área de Proteção Ambiental em região de manancial e é responsável pelo abastecimento público de Curitiba e região metropolitana. Foram realizadas coletas estacionais entre os meses de outubro de 2007 e agosto de 2008. As amostras perifíticas foram obtidas pela remoção do biofilme aderido a caules de Polygonum hydropiperoides e de lâminas de vidro. O estudo taxonômico resultou na identificação de 87 táxons. Os gêneros mais representativos, considerando a riqueza de espécies, foram Pinnularia (15 espécies) e Eunotia (14 espécies). Cinco espécies de diatomáceas foram registradas pela primeira vez no Brasil e sete no estado do Paraná. Comentários taxonômicos e ecológicos também são apresentados para as espécies encontradas.

Diatom assemblages associated with turtle carapaces in the Neotropical region / Diatomeas epizoicas de los caparazones de tortugas de la región Neotropical

Abstract Few studies have explored the ecology and interrelationship with other organisms of the many endangered freshwater turtle species inhabiting the Neotropical region. The focus of the current study was to shed light on the relationship between Neotropical turtle carapaces and primary producers, insofar as the surface of former constitutes a suitable substrate for the colonization and establishment of the latter. The under-explored relationship between turtle carapaces and the diatom assemblages inhabiting them was investigated and characterized in terms of taxonomic and biological traits (bio-volume, life-form, and attachment). The carapaces of seven native turtle species were surveyed. Among these carapaces, a total of 45 diatom taxa were found, and diatom taxa varied among turtle species. Podocnemis vogli and Podocnemis expansa supported more diverse diatom assemblages than Podocnemis lewyana, Rhinoclemmys diademata, and Rhinoclemmys melanosterna, which were dominated by Navicula spp. Analysis, further showed that carapace size did not explain differences in diatom diversity. However, a trait-based analysis suggests that both carapace roughness and an assemblage's successional stage might explain the differences in assemblage composition. Because turtles can serve as dispersal vectors, characterizing their epibiont diatom assemblages may contribute to our understanding of diatom distribution on larger scales, as well as, give us some clues as to the auto-ecology of turtles that help us to effectively determine conservation areas for these endangered species.(AU)

Resumen De las especies de tortugas en estado crítico o vulnerable de conservación que habitan en la región Neotropical, son pocos los estudios que han ahondado en su ecología o relaciones con otros tipos de organismos. El presente estudio buscó caracterizar la asociación existente entre las diatomeas y el caparazón de especies de tortugas neotropicales, ya que este representa un sustrato adecuado para la colonización y establecimiento de este grupo de algas. Esta asociación fue estudiada considerando tanto la composición de especies como la de rasgos biológicos (biovolumen, forma de vida, y forma de adherencia) de la comunidad de diatomeas. En los caparazones de las 7 especies de tortugas muestreadas se encontraron un total de 45 táxones. La composición de táxones varió entre los caparazones de las especies. Se encontró una mayor diversidad en los caparazones de Podocnemis vogli y Podocnemis expansa, mientras que en Podocnemis lewyana, Rhinoclemmys diademata, y Rhinoclemmys melanosterna se encontró una comunidad de baja diversidad dominada principalmente por Navicula sp. Los resultados sugirieron que la rugosidad del caparazón junto al estado de la sucesión pueden explicar las diferencias observadas en la composición de táxones de los diferentes caparazones. Debido a que las tortugas pueden funcionar como vectores de dispersión, caracterizar las comunidades que pueden crecer sobre sus caparazones podría contribuir a entender la distribución de las diatomeas a escalas mayores. Además, esta caracterización podría darnos pistas clave para la delimitación de áreas de conservación efectivas para las especies más amenazadas.(AU)

Lipid metabolism and pro-oxidant/antioxidant balance of Halamphora oceanica from the Gulf of Mexico exposed to water accommodated fraction of Maya crude oil.

Diatoms play key roles in primary production and carbon fixation at a global scale and in some cases these species live on marine ecosystems impacted by crude oil (CO) spills. Halamphora oceanica, a new diatom species from the Southwest of the Gulf of Mexico was isolated and cultured in the laboratory and was exposed to water accommodated fraction (WAF) of different Maya CO loads at 0.01, 0.1, 1 and 10g/L by 96h. A battery of biomarkers involved in oxidative stress (O2•, H2O2, TBARS, ROOH, RC=O, SOD, CAT, GPx), biotransformation and conjugation (total CYP450 activity and GST) moreover fatty acid (FA) metabolism (FA levels, fatty-acid synthase and acyl-CoA oxidase) were measured. Obtained results suggest that increases of PAHs in the medium (below to EC50) acts as external forces able to turn-on regulatory mechanisms on H. oceanica involved in both, on the PAHs uptake and changing its aerobic metabolism to anaerobic metabolism. However, the growth of this microalgae species evaluated as chlorophyll "a" and pheophytin levels increased as the WAF concentration indicating that PAHs and other hydrosoluble hydrocarbons were used as carbon and energy sources by unidentified enzymes not evaluated in the current study. Our hypothesis was also corroborated by IBRv2. In the current study, we suppose the change from aerobic to anaerobic metabolism as a strategy for Halamphora oceanica survival exposed to petroleum hydrocarbons.

Epilithic diatom communities of selected streams from the Lerma-Chapala Basin, Central Mexico, with the description of two new species.

The Lerma-Chapala Basin, in Central Mexico, is geologically heterogeneous, climatically diverse and boasts high biodiversity, lying within two Biodiversity Hotspots, namely Mesoamerica and the Madrean Pine-Oak Woodlands. Epilithon and water samples were collected in the basin from 14 sampling sites three times each, two sampling campaigns during the rainy season and one in the dry season. A total of 274 infrageneric taxa in 48 genera were recorded. The taxonomic composition observed was dominated by taxa from the genera Nitzschia, Gomphonema, Pinnularia, Navicula, Sellaphora and Eunotia. About a third of the taxa found could not be identified to the species level. From those unidentified morphodemes, two are described as new species, namely Brachysira altepetlensis and Sellaphora queretana. Furthermore, Eolimna rhombica is transferred to Sellaphora. Canonical Correspondence Analysis (CCA) revealed that specific conductivity and pH were the main environmental factors driving the community composition observed. Three groups of samples were identified after the CCA: 1) characterized by acidic waters and low conductivity; 2) with circumneutral waters, low specific conductivity and high temperature and phosphorous concentrations; and 3) characterized by circumneutral waters, high conductivity and low nitrogen concentrations. The indicator value method (IndVal), based on the relative abundance and relative frequency of the most abundant taxa was calculated based on the groups observed in the CCA, identifying the characteristic taxa for each of the three groups.

Gomphonema Ehrenberg (Bacillariophyceae) in a lotic environment of the Upper Paraná River floodplain, Brazil / Gomphonema Ehrenberg (Bacillariophyceae) em ambiente lótico da planície de inundaçãodo Alto Rio Paraná

A taxonomic study of species of the genus Gomphonema Ehrenberg (Bacillariophyceae) was performed in alotic environment (Ipoitã Channel) of the Upper Paraná River Floodplain. Samplings were performed in June, September and December 2013 and February 2014. Two petioles of Eichhornia azurea (Sw) Kunth were sampled at three different sites in the channel. Twelve species and two taxonomic varieties were identified. All species identified were recorded at the sampling site 3, loca ated close to the Ivinhema River. The lowest number of taxa occurred at the sampling site 1 (9 specific and infra specific taxa), in the confluence with the Paraná River. All taxa of Gomphonema were the first record for the Upper Paraná River Floodplain. Our results emphasize the lack of taxonomic studies for the region and the importance thereof to the knowledge of biodiversity.(AU)

Realizou-se o estudo taxonômico das espécies do gênero Gomphonema Ehrenberg (Bacillariophyceae) em um ambiente lótico (canal Ipoitã) da planície de inundação do alto rio Paraná. As coletas foram realizadas em junho, setembro e dezembro de 2013 e fevereiro de 2014. Dois pecíolos de Eichhornia azurea (Sw) Kunth foram amostrados em três pontos distintos do canal. Foram identificadas 12 espécies e duas variedades taxonômicas, sendo que todas foram registradas no ponto 3, situado próximo ao rio Ivinhema. O menor número de táxons ocorreu no ponto 1 (9 táxons específicos e infra específicos), na área de junção com o rio Paraná. Todos os táxons do gênero Gomphonema são primeiro registro para a planície de Inundação do Alto Rio Paraná. Os resultados ressaltam a carência de trabalhos taxonômicos para a região e a importância destes para o conhecimento da biodiversidade.(AU)

Shared Epizoic Taxa and Differences in Diatom Community Structure Between Green Turtles (Chelonia mydas) from Distant Habitats.

The first reports of diatoms growing on marine mammals date back to the early 1900s. However, only recently has direct evidence been provided for similar associations between diatoms and sea turtles. We present a comparison of diatom communities inhabiting carapaces of green turtles Chelonia mydas sampled at two remote sites located within the Indian (Iran) and Atlantic (Costa Rica) Ocean basins. Diatom observations and counts were carried out using scanning electron microscopy. Techniques involving critical point drying enabled observations of diatoms and other microepibionts still attached to sea turtle carapace and revealed specific aspects of the epizoic community structure. Species-poor, well-developed diatom communities were found on all examined sea turtles. Significant differences between the two host sea turtle populations were observed in terms of diatom abundance and their community structure (including growth form structure). A total of 12 and 22 diatom taxa were found from sea turtles in Iran and Costa Rica, respectively, and eight of these species belonging to Amphora, Chelonicola, Cocconeis, Navicula, Nitzschia and Poulinea genera were observed in samples from both locations. Potential mechanisms of diatom dispersal and the influence of the external environment, sea turtle behaviour, its life stage, and foraging and breeding habitats, as well as epibiotic bacterial flora on epizoic communities, are discussed.

Gomphonema Ehrenberg (Bacillariophyceae) in a lotic environment of the Upper Paraná River floodplain, Brazil / Gomphonema Ehrenberg (Bacillariophyceae) em ambiente lótico da planície de inundação do Alto Rio Paraná

A taxonomic study of species of the genus Gomphonema Ehrenberg (Bacillariophyceae) was performed in alotic environment (Ipoitã Channel) of the Upper Paraná River Floodplain. Samplings were performed in June, September and December 2013 and February 2014. Two petioles of Eichhornia azurea (Sw) Kunth were sampled at three different sites in the channel. Twelve species and two taxonomic varieties were identified. All species identified were recorded at the sampling site 3, loca ated close to the Ivinhema River. The lowest number of taxa occurred at the sampling site 1 (9 specific and infra specific taxa), in the confluence with the Paraná River. All taxa of Gomphonema were the first record for the Upper Paraná River Floodplain. Our results emphasize the lack of taxonomic studies for the region and the importance thereof to the knowledge of biodiversity.

Realizou- se o estudo taxonômico das espécies do gênero Gomphonema Ehrenberg (Bacillariophyceae) em um ambiente lótico (canal Ipoitã) da planície de inundação do alto rio Paraná. As coletas foram realizadas em junho, setembro e dezembro de 2013 e fevereiro de 2014. Dois pecíolos de Eichhornia azurea (Sw) Kunth foram amostrados em três pontos distintos do canal. Foram identificadas 12 espécies e duas variedades taxonômicas, sendo que todas foram registradas no ponto 3, situado próximo ao rio Ivinhema. O menor número de táxons ocorreu no ponto 1 (9 táxons específicos e infra específicos), na área de junção com o rio Paraná. Todos os táxons do gênero Gomphonema são primeiro registro para a planície de Inundação do Alto Rio Paraná. Os resultados ressaltam a carência de trabalhos taxonômicos para a região e a importância destes para o conhecimento da biodiversidade.

Asterionellopsis tropicalis (Bacillariophyceae): a new tropical species found in diatom accumulations.

The diatom Asterionellopsis glacialis sensu lato forms high-density patches in the surf zone of some sandy beaches worldwide and was until recently considered a cosmopolitan species. With the recent description of four cryptic species, the identity of specimens found in these accumulations remains uncertain. In this study, diatom patches were sampled from two sandy beaches of the Brazilian coast: one tropical (Futuro Beach, 3° S; 38° W) and one subtropical (Cassino Beach, 32° S; 52° W). Fine structure of frustules and the sequencing of three phylogenetic markers revealed the subtropical strains to be A. guyunusae and the tropical strains to be a new species, here described as Asterionellopsis tropicalis sp. nov. A. tropicalis was differentiated morphologically by the number of striae in 10 µm at the foot pole and head (39-44; 38-45, respectively), from A. lenisilicea (46-55; 46-64), A. maritima (46-51; 46-60), and A. thurstonii (42-58; 55-70). The number of striae at the head region of the valvocopula (10 µm) helped to distinguish A. tropicalis (56-62) from A. guyunusae (61-64), but A. tropicalis was morphologically undistinguishable from A. glacialis. The sequence divergence from other identified Asterionellopsis species was 13%-16% (Cox1), 11%-12% (5.8S + ITS2) and 2%-6% (RbcL), and A. tropicalis formed a distinct monophyletic clade with high support in all analyzed phylogenetic trees (single or multi-locus). This work will aid in the understanding of the ecological and physiological diversity of diatom patches that are key to the trophic webs of sandy beaches.

Net biogenic silica production and the contribution of diatoms to new production and organic matter export in the Costa Rica Dome ecosystem.

We determined the net rate of biogenic silica (bSiO2) production and estimated the diatom contribution to new production and organic matter export in the Costa Rica Dome during summer 2010. The shallow thermocline significantly reduces bSiO2 dissolution rates below the mixed layer, leading to significant enhancement of bSiO2 relative to organic matter (silicate-pump condition). This may explain why deep export of bSiO2 in this region is elevated by an order of magnitude relative to comparable systems. Diatom carbon, relative to autotrophic carbon, was low (<3%); however, the contribution of diatoms to new production averaged 3 and 13% using independent approaches. The 4-old discrepancy between methods may be explained by a low average C:Si ratio (∼1.4) for the net produced diatom C relative to the net produced bSiO2. We speculate that this low production ratio is not the result of reduced C, but may arise from a significant contribution of non-diatom silicifying organisms to bSiO2 production. The contribution of diatoms to organic matter export was minor (5.7%). These results, and those of the broader project, suggest substantial food-web transformation of diatom organic matter in the euphotic zone, which creates enriched bSiO2 relative to organic matter within the exported material.