ABSTRACT
Altered immune response during pregnancy has been associated with ASD susceptibility. HLA-G is expressed by the trophoblast at the maternal/fetal interface and induces allogenic tolerance toward the fetus. A 14-bp insertion in the HLA-G 3'UTR (rs371194629) was associated with reduced levels of HLA-G. We aimed to assess the influence of the HLA-G*14 bp indel variant in ASD susceptibility and symptomatology in a Brazilian admixed sample. The insertion genotype (14 bp+/14 bp+) was firstly associated with hetero aggression, but statistical significance was lost after correction (p = 0.035, pcorrected = 0.35). No association between the HLA-G variant and susceptibility to ASD or differential clinical manifestations were observed.
ABSTRACT
The domain of application of the G3(MP2)//B3-SBK theory was expanded, and its efficiency was evaluated to determinate enthalpies of formation of forty-one iodine compounds. The results were compared to those obtained with the G2 theory for the same set of molecules. The G3(MP2)//B3-SBK theory showed a mean deviation and deviation standard equal to 3.7 kcal mol-1 and 6.0 kcal mol-1, respectively. The G2 theory (mean deviation = 3.1 kcal mol-1 and standard deviation = 4.9 kcal mol-1) presented a lower error and standard deviation, but at a significantly higher computational cost. For a more complete evaluation, as a secondary part of the work, it also used different functionals B3LYP, M06-2X, WB97XD, and MP2 method with four different basis sets 6-311G(d,p), LANL2DZ, jorge-ADZP, and CEP-31G(d). The best density functional/basis set combination was obtained with M06-2X/CEP-31G(d) among the three mentioned functionals. However, the produced mean deviation is significant and equal to 17.3 kcal mol-1, with a standard deviation equal to 23.0 kcal mol-1. The 6-311G(d,p) basis achieved the best performance with the MP2 method, generating an equally significant mean deviation of 12.8 kcal mol-1 with a standard deviation equal to 18.7 kcal mol-1.
Subject(s)
Iodine Compounds , Quantum Theory , ThermodynamicsABSTRACT
Human Leukocyte Antigen (HLA)-G participates in several biological processes, including reproduction, vascular remodeling, immune tolerance, and hypoxia response. HLA-G is a potential candidate gene for high altitude adaptation since its expression is modulated in both micro and macro environment under hypoxia and constant cellular stress. Besides the promoter region, the HLA-G 3'untranslated region (UTR) influences HLA-G expression patterns through several post-transcriptional mechanisms. Currently, the 3'UTR genetic diversity in terms of altitude adaptation of Native American populations is still unexplored, particularly at high altitude ecoregions. Here, we evaluated 288 Native Americans from 9 communities located in the Andes [highland (HL); ≥2,500 m (range = 2,838-4,433 m)] and 8 populations located in lowland (LL) regions [<2,500 m (range = 80-431 m); Amazonian tropical forest, Brazilian central plateau, and Chaco] of South America. In total, nine polymorphic sites and ten haplotypes were observed. The most frequent haplotypes (UTR-1, UTR-2, and UTR-3) accounted for â¼ 77% of haplotypes found in LL, while in the HL, the same haplotypes reach â¼ 93%. Also, a remarkable high frequency of putative ancestral UTR-5 haplotype was observed in LL (21.5%), while in HL UTR-2 reaches up to 47%. Further, UTR-2 frequency positively correlates with altitude-related variables, while a negative correlation for UTR-5 was observed. From an evolutionary perspective, we observed a tendency towards balancing selection in HL and LL populations thus suggesting that haplotypes of ancient and more derived alleles may have been co-opted for relatively recent adaptations such as those experienced by modern humans in the highland and lowland of South America. We also discuss how long-term balancing selection can be a reservoir of genetic variants that can be positively selected. Finally, our study provides some pieces of evidence that HLA-G 3'UTR haplotypes may have contributed to high altitude adaptation in the Andes.
Subject(s)
American Indian or Alaska Native , HLA-G Antigens , 3' Untranslated Regions/genetics , Brazil , Gene Frequency , Genotype , HLA-G Antigens/genetics , Haplotypes , Humans , Polymorphism, Single NucleotideABSTRACT
Aim: To perform a molecular analysis of rotavirus A (RVA) G3P[6] strains detected in 2012 and 2017 in the Amazon region of Brazil. Materials & methods: Eighteen RVA G3P[6] strains were collected from children aged under 10 years hospitalized with acute gastroenteritis, and partial sequencing of each segment genome was performed using Sanger sequencing. Results: Phylogenetic analysis showed that all G3P[6] strains had a DS-1-like genotype constellation. Two strains had the highest nucleotide identities with equine-like G3P[6]/G3P[8] genotypes. Several amino acid alterations in VP4 and VP7 neutralizing epitopes of equine-like RVA G3P[6] strains were observed in comparison with vaccine strains. Conclusion: These findings suggest that equine-like RVA G3P[6] strains have been circulating in the Amazon region of Brazil as a result of direct importation, and support natural RVA evolutionary mechanisms.
Subject(s)
Genome, Viral , Reassortant Viruses , Rotavirus , Animals , Brazil , Child , Horses , Humans , Phylogeny , Rotavirus/genetics , Rotavirus/isolation & purificationABSTRACT
The cytoskeleton of ependymal cells is fundamental to organize and maintain the normal architecture of the central canal (CC). However, little is known about the plasticity of cytoskeletal components after spinal cord injury. Here, we focus on the structural organization of the cytoskeleton of ependymal cells in the normal and injured spinal cord of mice (both females and males) using immunohistochemical and electron microscopy techniques. We found that in uninjured animals, the actin cytoskeleton (as revealed by phalloidin staining) was arranged following the typical pattern of polarized epithelial cells with conspicuous actin pools located in the apical domain of ependymal cells. Transmission electron microscopy images showed microvilli tufts, long cilia, and characteristic intercellular membrane specializations. After spinal cord injury, F-actin rearrangements paralleled by fine structural modifications of the apical domain of ependymal cells were observed. These changes involved disruptions of the apical actin pools as well as fine structural modifications of the microvilli tufts. When comparing the control and injured spinal cords, we also found modifications in the expression of vimentin and glial fibrillary acidic protein (GFAP). After injury, vimentin expression disappeared from the most apical domains of ependymal cells but the number of GFAP-expressing cells within the CC increased. As in other polarized epithelia, the plastic changes in the cytoskeleton may be critically involved in the reaction of ependymal cells following a traumatic injury of the spinal cord.
Subject(s)
Cytoskeleton/metabolism , Ependyma/metabolism , Spinal Cord Injuries/metabolism , Spinal Cord/metabolism , Thoracic Vertebrae/injuries , Animals , Cytoskeleton/pathology , Ependyma/cytology , Ependyma/pathology , Female , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Spinal Cord/cytology , Spinal Cord/pathology , Spinal Cord Injuries/pathologyABSTRACT
This research had as objective to evaluate the occurrence and to characterize genetically the infections by Cryptosporidium in Mazama gouazoubira. By a non-invasive harvest methodology using trained sniffer dogs to locate fecal samples of cervids, 642 fecal samples were obtained from six Brazilian localities. The cervids species responsible for the excretion of each fecal sample were identified by the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP), using the mitochondrial cytochrome b target gene (cyst b) and the restriction enzymes Sspl, AflIII and BstN. From this identification, 437 fecal samples of M. gouazoubira were selected for research of Cryptosporidium spp. performed through negative staining with malachite green and polymerase chain reaction (nPCR), with the subunit of 18S rRNA gene, followed by sequencing the amplified products. In the samples that were diagnosed the presence of parasite species with zoonotic potential, genotyping was also performed using nPCR with the subunit of GP60 gene. Statistical analysis consisted of the Fisher exact test to verify the association of the presence of the enteroparasite in relation to the presence of cattle in each locality, and the McNemar tests and Kappa correlation coefficient used to compare the results obtained between the two diagnostic techniques. In the fecal samples of M. gouazoubira the occurrences of Cryptosporidium were diagnosed in 1.6% (7/437) and 1.1% (5/437), respectively, through nPCR and microscopy. Cryptosporidium. parvum was diagnosed in 100% (7/7) of the samples submitted to sequencing (18S gene). The IIaA16G3R1 subtype was diagnosed in five of the C. parvum samples submitted to genotyping (GP60 gene). This is the first world report of C. parvum in M. gouazoubira and subtype IIaA16G3R1 in cervids.
Subject(s)
Cryptosporidiosis/diagnosis , Cryptosporidium parvum/isolation & purification , Deer , Feces/parasitology , Animals , Brazil , Cattle , Cryptosporidiosis/parasitology , Polymerase Chain Reaction/veterinary , Polymorphism, Restriction Fragment Length , RNA, Helminth/analysis , RNA, Ribosomal, 18S/analysisABSTRACT
BACKGROUND: About 15%-25% of appendices removed to treat acute appendicitis present normal macro- and macroscopic morphology. The objective of this study was to verify an association of proinflammatory, neuroendocrine and immune mediators with morphologically normal appendices removed from patients with clinical laboratorial and imaging characteristics of acute appendicitis. MATERIALS AND METHODS: Appendices removed from 121 adult patients of both genders were distributed into three groups according to their following characteristics: group 1: 53 macro- and microscopically normal appendices from patients with clinical, laboratorial and imaging diagnosis of acute appendicitis; group 2: 24 inflamed appendices from patients with clinical, laboratorial, imaging and histopathological diagnosis of acute appendicitis; group 3: 44 normal appendices from patients submitted to right colectomy to treat localized ascending colon adenocarcinoma. All appendices were immunohistochemically studied for gastrin inhibitor peptide, mast cell tryptase, vascular endothelial growth factor; intestinal vasoactive peptide, tumor necrosis factor alpha, interleukin 1, prostaglandin E2, gene-protein product 9.5, CD8 T lymphocytes, synaptophysine, enolase, and S100 protein. RESULTS: The group 1 revealed increased levels of synaptophysine, enolase, mast cell tryptase and PGP-9.5 comparing with the other two groups. The group 2 presented increased levels of interleukin 1, CD8 T lymphocytes and prostaglandin E2 comparing with the other two groups. The group 3 confirmed the normal levels of all these neuroendocrine, immune and proinflammatory mediators. CONCLUSIONS: Morphologically normal appendices removed from patients with clinical and complementary exams indicating acute appendicitis have appendicular neuroimmunoendocrine disorder associated with the mediators synaptophysin, enolase, mast cell-related tryptase and gene-protein product 9.5.
ABSTRACT
INTRODUCTION: Glioblastoma multiforme (GBM) is the most lethal form of gliomas. New therapies are currently in development to tackle treatment limitations such as chemotherapy resistance. One mechanism of resistance may be the stress granules (SG) assembly, a stress-related cellular response that allows cells to recruit and protect mRNAs during stress. SG are composed of various proteins, being G3BP1 a core element that enucleates and results in SG assembly. Here, we aimed to evaluate the effects of inhibiting the G3PB1 expression in the chemotherapeutical-induced cell death of the U87 glioblastoma cell line. MATERIALS AND METHODS: G3BP1 mRNA and protein expression were modulated with short-interference RNA (siRNA). The viability of U87 cells after Bortezomib (BZM), a proteasome inhibitor, and Temozolomide (TMZ), an alkylating agent, was assessed by MTT assay. Apoptosis was evaluated by staining cells with Annexin-V/7-AAD and analyzing by flow cytometry. Caspase-3 activation was evaluated by immunoblotting. The chorioallantoic membrane in vivo assay was used to evaluate angiogenesis. RESULTS: When G3BP1 was knocked-down, the SG assembly was reduced and the BZM-treated cells, but not TMZ-treated cells, had a significant increase in the apoptotic response. Corroborating this data, we observed increased Caspase-3 activation in the BZM-treated and G3BP1-knocked-down cells when compared to vehicle-treated and scramble-transfected cells. Worth mentioning, the conditioned culture medium of G3BP1-knocked-down BZM-treated cells inhibited angiogenesis when compared to controls. CONCLUSION: Our data suggest G3BP1 knockdown diminishes SG formation and stimulates BZM-induced apoptosis of U87 cells in vitro, in addition to inhibiting glioblastoma-induced angiogenesis in vivo.
Subject(s)
Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Bortezomib/pharmacology , Cytoplasmic Granules/drug effects , DNA Helicases/antagonists & inhibitors , Glioblastoma/drug therapy , Neovascularization, Pathologic/drug therapy , Poly-ADP-Ribose Binding Proteins/antagonists & inhibitors , RNA Helicases/antagonists & inhibitors , RNA Recognition Motif Proteins/antagonists & inhibitors , Antineoplastic Agents, Alkylating/pharmacology , Cell Proliferation/drug effects , Cytoplasmic Granules/pathology , Glioblastoma/metabolism , Glioblastoma/pathology , Humans , Neovascularization, Pathologic/metabolism , Neovascularization, Pathologic/pathology , Temozolomide/pharmacology , Tumor Cells, CulturedABSTRACT
Inter-genogroup reassortant group A rotavirus (RVA) strains possessing a G3 VP7 gene of putative equine origin (EQL-G3) have been detected in humans since 2013. Here we report detection of EQL-G3P[8] RVA strains from the Dominican Republic collected in 2014-16. Whole-gene analysis of RVA in stool specimens revealed 16 EQL-G3P[8] strains, 3 of which appear to have acquired an N1 NSP1 gene from locally-circulating G9P[8] strains and a novel G2P[8] reassortant possessing 7 EQL-G3-associated genes and 3 genes from a locally-circulating G2P[4] strain. Phylogenetic/genetic analyses of VP7 gene sequences revealed nine G3 lineages (I-IX) with newly-assigned lineage IX encompassing all reported human EQL-G3 strains along with the ancestral equine strain. VP1 and NSP2 gene phylogenies suggest that EQL-G3P[8] strains were introduced into the Dominican Republic from Thailand. The emergence of EQL-G3P[8] strains in the Dominican Republic and their reassortment with locally-circulating RVA could have implications for current vaccination strategies.
Subject(s)
Horse Diseases/virology , Reassortant Viruses/isolation & purification , Rotavirus Infections/veterinary , Rotavirus Infections/virology , Rotavirus/isolation & purification , Animals , Dominican Republic , Genome, Viral , Horses , Humans , Phylogeny , Reassortant Viruses/classification , Reassortant Viruses/genetics , Rotavirus/classification , Rotavirus/genetics , Thailand , Viral Proteins/geneticsABSTRACT
Variation in Disrupted-in-Schizophrenia 1 (DISC1) increases the risk for neurodegenerative diseases, schizophrenia, and other mental disorders. However, the functions of DISC1 associated with the development of these diseases remain unclear. DISC1 has been reported to inhibit Akt/mTORC1 signaling, a major regulator of translation, and recent studies indicate that DISC1 could exert a direct role in translational regulation. Here, we present evidence of a novel role of DISC1 in the maintenance of protein synthesis during oxidative stress. In order to investigate DISC1 function independently of Akt/mTORC1, we used Tsc2-/- cells, where mTORC1 activation is independent of Akt. DISC1 knockdown enhanced inhibition of protein synthesis in cells treated with sodium arsenite (SA), an oxidative agent used for studying stress granules (SGs) dynamics and translational control. N-acetyl-cysteine inhibited the effect of DISC1, suggesting that DISC1 affects translation in response to oxidative stress. DISC1 decreased SGs number in SA-treated cells, but resided outside SGs and maintained protein synthesis independently of a proper SG nucleation. DISC1-dependent stimulation of translation in SA-treated cells was supported by its interaction with eIF3h, a component of the canonical translation initiation machinery. Consistent with a role in the homeostatic maintenance of translation, DISC1 knockdown or overexpression decreased cell viability after SA exposure. Our data suggest that DISC1 is a relevant component of the cellular response to stress, maintaining certain levels of translation and preserving cell integrity. This novel function of DISC1 might be involved in its association with pathologies affecting tissues frequently exposed to oxidative stress.
Subject(s)
Arsenites/pharmacology , Nerve Tissue Proteins/metabolism , Oxidative Stress/drug effects , Sodium Compounds/pharmacology , Animals , Cell Survival/drug effects , Cytoplasmic Granules/metabolism , DNA Helicases/metabolism , Eukaryotic Initiation Factor-3/metabolism , Gene Expression Regulation , Gene Knockdown Techniques , HEK293 Cells , Humans , Mechanistic Target of Rapamycin Complex 1 , Mice , Nerve Tissue Proteins/genetics , Oncogene Protein v-akt , Poly-ADP-Ribose Binding Proteins/metabolism , RNA Helicases/metabolism , RNA Recognition Motif Proteins/metabolism , Transcriptome , Tuberous Sclerosis Complex 2 Protein/geneticsABSTRACT
In 2013, the equine-like G3P[8] DS-1-like rotavirus (RVA) strain emerged worldwide. In 2016, this strain was reported in northern Brazil. The aims of the study were to conduct a retrospective genetic investigation to identify the possible entry of these atypical strains in Brazil and to describe their distribution across a representative area of the country. From 2013 to 2017, a total of 4226 faecal samples were screened for RVA by ELISA, PAGE, RT-PCR and sequencing. G3P[8] represented 20.9â% (167/800) of all RVA-positive samples, further subdivided as equine-like G3P[8], DS-1-like (11.0â%; 88/800) and Wa-like G3P[8] (9.9â%; 79/800). Six equine-like G3P[8] DS-1-like samples were selected for whole-genome investigation, confirming the backbone I2-R2-C2-M2-A2-N2-T2-E2-H2. During 2013-2014, Wa-like G3P[8] was predominant and no equine-like G3P[8] DS-1-like was detected. Equine-like G3P[8] DS-1-like was first identified in Paraná in March/2015, suggesting that the strain entered Brazil through the Southern region. Equine-like G3P[8] rapidly spread across the area under surveillance and displayed a marked potential to replace Wa-like G3P[8] strains. Brazilian equine-like G3P[8] DS-1-like strains clustered with contemporary equine-like G3P[8] DS-1-like detected worldwide, but exhibited a distinct NSP2 genotype (N2) compared to the previously reported Amazon equine-like G3P[8] DS-1-like strain (N1). Two distinct NSP4 E2 genotype lineages were also identified. Taken together, these data suggest that different variants of equine-like G3P[8] DS-1-like strains might have been introduced into the country at distinct time points, and co-circulated in the period 2015-2017. The global emergence of equine-like G3P[8] DS-1-like strains, predominantly in countries using the Rotarix vaccine, raises the question of whether vaccines may be inducing selective pressures on zoonotic strains.
Subject(s)
Genotype , Rotavirus Infections/epidemiology , Rotavirus Infections/virology , Rotavirus/classification , Rotavirus/isolation & purification , Brazil/epidemiology , Electrophoresis, Polyacrylamide Gel , Enzyme-Linked Immunosorbent Assay , Feces/virology , Gastroenteritis/epidemiology , Gastroenteritis/virology , Humans , Molecular Epidemiology , Retrospective Studies , Reverse Transcriptase Polymerase Chain Reaction , Rotavirus/genetics , Sequence Analysis, DNA , Topography, MedicalABSTRACT
Equine rotavirus A (ERVA) is the leading cause of diarrhea in neonatal foals and a major health problem to the equine breeding industry worldwide. The G3P[12] and G14P[12] ERVA genotypes are the most prevalent in foals with diarrhea. Control and prevention strategies include vaccination of pregnant mares with an inactivated vaccine containing a prototype ERVA G3P[12] strain with limited and controversial field efficacy. Here, we performed the molecular characterization of ERVA strains circulating in central Kentucky using fecal samples collected during the 2017 foaling season. The data indicated for the first time that the G14P[12] genotype is predominant in this region in contrast to a previous serotyping study where only G3 genotype strains were reported. Overall, analysis of antigenic sites in the VP7 protein demonstrated the presence of several amino acid substitutions in the epitopes exposed on the surface including a non-conserved N-linked glycosylation site (D123N) in G14P[12] strains, while changes in antigenic sites of VP8* were minor. Also, we report the successful isolation of three ERVA G14P[12] strains which presented a high identity with other G14 strains from around the world. These may constitute ideal reference strains to comparatively study the molecular biology of G3 and G14 strains and perform vaccine efficacy studies following heterologous challenge in the future.
Subject(s)
Horse Diseases/virology , Horses/virology , Phylogeny , Rotavirus Infections/veterinary , Rotavirus/classification , Rotavirus/genetics , Animals , Antigens, Viral/chemistry , Antigens, Viral/genetics , Base Sequence , Capsid Proteins/chemistry , Capsid Proteins/genetics , Cell Line , Diarrhea/virology , Feces/virology , Female , Genome, Viral/genetics , Genotype , Horse Diseases/blood , Horse Diseases/pathology , Kentucky , Pregnancy , RNA, Viral/genetics , RNA-Binding Proteins/chemistry , RNA-Binding Proteins/genetics , Rotavirus/immunology , Rotavirus Infections/blood , Rotavirus Infections/pathology , Rotavirus Infections/virology , Sequence Analysis, DNA , Viral Nonstructural Proteins/chemistry , Viral Nonstructural Proteins/genetics , Viral Proteins/chemistry , Viral Proteins/geneticsABSTRACT
In semi-arid regions, the occurrence of water with high concentration of salts is common, which compromises the growth and consequently the production of crops. Thus, this study aimed to evaluate the gas exchanges and production of sesame, cv. CNPA G3, irrigated with saline water and fertilized with different proportions of nitrate and ammonium, in an experiment conducted using lysimeters in a greenhouse in the municipality of Campina Grande-PB, Brazil. The treatments were arranged in randomized blocks and analyzed in a 5 x 5 factorial scheme, with three replicates, relative to five levels of electrical conductivity of the irrigation water ECw (0.6, 1.2, 1.8, 2.4 and 3.0 dS m-1) and five proportions of nitrate/ammonium - NO3 -/NH4 + (200/0, 150/50, 100/100, 50/150 and 0/200 mg of N kg-1 of soil). Irrigation with water of salinity level higher than 0.6 dS m-1 promoted negative effect on gas exchanges and production components of the sesame cv. CNPA G3. Fertilization with N exclusively in the form of NH4 + promoted increment in CO2 concentration and reduction in its assimilation rate and instantaneous carboxylation efficiency. The highest rate of CO2 assimilation, transpiration and instantaneous carboxylation efficiency were obtained when the plants were irrigated with water of 0.6 dS m-1 and fertilization with 200/0 of NO3 -/NH4 +. Increasing levels of water salinity promoted a decrease in the total seed mass, regardless of the proportion of NO3 -/NH4 +. The sesame cv. CNPA G3 is classified as sensitive to salt stress from the electrical conductivity of water of 0.6 dS m-1.
Nas regiões semiáridas é comum a ocorrência de águas com elevada concentração de sais que comprometem o crescimento e consequentemente a produção das culturas. Deste modo, objetivou-se avaliar as trocas gasosas e a produção do gergelim cv. CNPA G3 irrigado com águas salinas e adubado com diferentes proporções de nitrato e amônio em um ensaio conduzido em lisímetros dispostos em casa de vegetação no município de Campina Grande, PB. Os tratamentos foram distribuídos em blocos ao acaso e analisados em esquema fatorial 5 x 5, com três repetições, relativos a cinco níveis de condutividade elétrica da água de irrigação CEa (0,6; 1,2; 1,8; 2,4 e 3,0 dS m-1) e cinco proporções de nitrato e amônio - NO3 -/NH4 + (200/0; 150/50; 100/100; 50/150 e 0/200 mg de N kg-1 de solo). A irrigação com água de salinidade superior a 0,6 dS m-1 promoveu efeito negativo sobre as trocas gasosas e os componentes de produção do gergelim cv CNPA G3. A adubação com N exclusivamente na forma de NH4 + proporcionou incremento na concentração de CO2 e redução na taxa de assimilação de CO2, eficiência instantânea de carboxilação. A maior taxa de assimilação de CO2, transpiração e eficiência instantânea de carboxilação foram obtidas quando as plantas foram irrigadas com água de 0,6 dS m-1 e adubação com 200/0 de NO3 -/ NH4 +. Níveis crescentes de salinidade da água promoveram diminuição na massa total de sementes, independente da proporção de NO3 - e NH4 +. O gergelim cv. CNPA G3 foi classificado como sensível ao estresse salino, a partir da condutividade elétrica da água de 0,6 dS m-1.
Subject(s)
Soil , Sesamum , Nitrates , NitrogenABSTRACT
The species A rotaviruses (RVA) are important gastroenteric pathogens that infect humans and animals. RVA genotype G3P[9] has been described in human-animal reassortment events, and the complexity of its hosts motivates the genetic investigation of this strain. Therefore, the aim of this study is to analyse a G3P[9] sample that was detected in a child with acute gastroenteritis. The 1A3739 sample featured the constellation G3P[9]-I18-R3-C3-Mx-A19-N3-T3-E3-H6. The sequence for VP3 gene was not obtained. The phylogeny showed a closer relationship among genes VP7, VP1, NSP3, NSP4, and NSP5 with genes of animal origin, such as chiropter, alpaca, equine, and simian. In addition, the genes VP6 and NSP1 belong to the new genotypes I18 and A19, respectively. The emergence of strains such as these can interfere with the effectiveness of the RVA vaccine, and continuous monitoring is therefore important. Additional studies are needed to determine the evolutionary source and to identify a possible reservoir of RVA in nature.
Subject(s)
Gastroenteritis/virology , Genotype , Reassortant Viruses/genetics , Rotavirus Infections/virology , Rotavirus/genetics , Child, Preschool , Evolution, Molecular , Female , Humans , Phylogeny , Recombination, Genetic , Rotavirus/isolation & purification , Sequence Analysis, DNAABSTRACT
This study aims to estimate the frequency of group A rotaviruses (RVA) infection with genotypes G3P[8] and G9P[8] in children that suffered from diarrheal disease (DD) between 2001 and 2011 in different Brazilian regions. In addition, the genetic diversity of G3P[8] and G9P[8] RVA strains recovered from vaccinated and non-vaccinated children was assessed. Laboratory-based RVA surveillance included 15,115 cases of DD, and RVA was detected by enzyme immune-assay and/or polyacrylamide gel electrophoresis in 3357 (22%) samples. RVA was genotyped by the semi-nested RT-PCR and among RVA-positive samples, 100 (2.9%) were G3 (63 G3P[8], 32 G3P not typed [NT], and 5 G3P[6]) and 378 (16.2%) were G9 (318 G9P[8], 59 G9P[NT], and 1 G9P[6]). From the G3 and G9 positive samples, 16 and 12, respectively, were obtained from children aged 4-48months vaccinated with the monovalent vaccine (Rotarix®, RV1). Phylogenetic analyses of the VP7 and VP8(∗) encoding genes were performed for 26 G3P[8] and 48 G9P[8] strains. VP8(∗) phylogenetic analysis revealed that all strains analyzed belonged to P[8] lineage III, whereas RV1 belongs to P[8]-I lineage. VP7 analysis revealed that all G3 and G9 strains belonged to G3-lineage III and G9-lineage III. The comparison of the VP7 and VP8(∗) antigenic epitopes regions of Brazilian strains with RV1 strain revealed several amino acid changes. However, no particular differences among Brazilian strains detected before and after vaccine introduction were observed, or among strains detected from vaccinated and non-vaccinated children. Complete genome characterization of four G3P[8] and seven G9P[8] strains revealed a typical conserved human Wa-like genomic constellation. Changes in the genetic diversity of G3P[8] and G9P[8] RVA detected from 2001 to 2011 in Brazil seemed not be related to RV1 introduction in Brazil.
Subject(s)
Rotavirus Infections/epidemiology , Rotavirus Infections/virology , Rotavirus/classification , Rotavirus/genetics , Antigens, Viral/genetics , Brazil/epidemiology , Capsid Proteins/genetics , Child, Preschool , Feces/virology , Humans , Infant , Phylogeny , RNA-Binding Proteins/genetics , Rotavirus Vaccines , Viral Nonstructural Proteins/geneticsABSTRACT
Rotavirus A (RVA) is the most common cause of severe acute gastroenteritis in infants and young children worldwide, causing 453,000 deaths annually. In Brazil, the most frequent genotype identified was G1 during almost three decades in the pre-vaccination period; however, after anti-rotavirus vaccine introduction, there was a predominance of G2 genotype. The aim of this study was to determine the G and P genotypes of rotaviruses isolated from children under 5 years of age with acute gastroenteritis in the Northern region of Brazil, and discuss the emergence of G3P[6] genotype. A total of 783 stool specimens were obtained between January 2011 and March 2012. RVA antigen was detected in 33% (272/783) of samples using a commercial enzyme-linked immunosorbent assay and type-specificity was determined by reverse-transcription polymerase chain reaction. The most common binary combination was G2P[4], representing 41% of cases, followed by G3P[6] (15%), G1P[8] (8%), G3P[8] (4%), G9P[8] (3%), and G12P[6] (2%). G3P[6] strains were analyzed further and phylogenetic analysis of VP7 gene showed that G3 strains clustered into lineage I and showed a high degree of amino acid identity with vaccine strain RV3 (95.1-95.6%). For VP4 sequences, G3P[6] clustered into lineage Ia. It was demonstrated by the first time the emergence of unusual genotype G3P[6] in the Amazon region of Brazil. This genotype shares neither VP7 nor VP4 specificity with the used vaccine and may represent a challenge to vaccination strategies. A continuous monitoring of circulating strains is therefore needed during the post-vaccine era in Brazil.