Genetic Signatures of Positive Selection in Human Populations Adapted to High Altitude in Papua New Guinea.

Papua New Guinea (PNG) hosts distinct environments mainly represented by the ecoregions of the Highlands and Lowlands that display increased altitude and a predominance of pathogens, respectively. Since its initial peopling approximately 50,000 years ago, inhabitants of these ecoregions might have differentially adapted to the environmental pressures exerted by each of them. However, the genetic basis of adaptation in populations from these areas remains understudied. Here, we investigated signals of positive selection in 62 highlanders and 43 lowlanders across 14 locations in the main island of PNG using whole-genome genotype data from the Oceanian Genome Variation Project (OGVP) and searched for signals of positive selection through population differentiation and haplotype-based selection scans. Additionally, we performed archaic ancestry estimation to detect selection signals in highlanders within introgressed regions of the genome. Among highland populations we identified candidate genes representing known biomarkers for mountain sickness (SAA4, SAA1, PRDX1, LDHA) as well as candidate genes of the Notch signaling pathway (PSEN1, NUMB, RBPJ, MAML3), a novel proposed pathway for high altitude adaptation in multiple organisms. We also identified candidate genes involved in oxidative stress, inflammation, and angiogenesis, processes inducible by hypoxia, as well as in components of the eye lens and the immune response. In contrast, candidate genes in the lowlands are mainly related to the immune response (HLA-DQB1, HLA-DQA2, TAAR6, TAAR9, TAAR8, RNASE4, RNASE6, ANG). Moreover, we find two candidate regions to be also enriched with archaic introgressed segments, suggesting that archaic admixture has played a role in the local adaptation of PNG populations.

Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere.

Coriariaceae are a small plant family of 14-17 species and subspecies that currently have a global but disjunct distribution. All species can form root nodules in symbiosis with diazotrophic Frankia cluster-2 strains, which form the earliest divergent symbiotic clade within this bacterial genus. Studies on Frankia cluster-2 mostly have focused on strains occurring in the northern hemisphere. Except for one strain from Papua New Guinea, namely Candidatus Frankia meridionalis Cppng1, no complete genome of Frankia associated with Coriaria occurring in the southern hemisphere has been published thus far, yet the majority of the Coriariaceae species occur here. We present field sampling data of novel Frankia cluster-2 strains, representing two novel species, which are associated with Coriaria arborea and Coriaria sarmentosa in New Zealand, and with Coriaria ruscifolia in Patagonia (Argentina), in addition to identifying Ca. F. meridionalis present in New Zealand. The novel Frankia species were found to be closely related to both Ca. F. meridionalis, and a Frankia species occurring in the Philippines, Taiwan, and Japan. Our data suggest that the different Frankia cluster-2 species diverged early after becoming symbiotic circa 100 million years ago.

A new species of Bama McAlpine (Diptera, Platystomatidae) from New Guinea

ABSTRACT Bama McAlpine is a genus of Platystomatidae restricted to Papua New Guinea. Here, we present the description of the new species, Bama (Bama) dichroma. Additionally, we provide an updated identification key and a distribution map for all known species of Bama.

Revision of black fungus gnat species (Diptera, Sciaridae) described from the Hawaiian Islands by D.E. Hardy and W.A. Steffan, and a contribution to the knowledge of the sciarid fauna of the Galápagos Islands.

On the Hawaiian Islands 22 sciarid species were detected, belonging to the following ten genera: Austrosciara Schmitz Mjöberg, Bradysia Winnertz, Corynoptera Winnertz, Cratyna Winnertz, Epidapus Haliday, Hyperlasion Schmitz, Lycoriella Frey, Phytosciara Frey, Pseudolycoriella Menzel Mohrig and Scatopsciara Edwards. The revision resulted in new combinations for the following five species: Austrosciara hawaiiensis (Hardy) comb. n., Corynoptera prominens (Hardy) comb. n., Cratyna adrostylata (Hardy) comb. n., Cr. longicosta (Hardy) comb. n., and Scatopsciara hoyti (Hardy) comb. n. Eight species were declared as new synonyms: Bradysia bishopi Steffan, 1973 = B. centidens Vilkamaa, Hippa Mohrig, 2012 syn. n.; B. crassicornis (Skuse, 1890) = B. molokaiensis (Grimshaw, 1901) syn. n. and = B. aspercera Mohrig, 2016 syn. n.; B. radicum (Brunetti, 1912) = B. spatitergum (Hardy, 1956) syn. n.; Corynoptera prominens (Hardy, 1956) = C. gladiota Mohrig, 2004 syn. n.; Cosmosciara hartii (Johannsen, 1912) = Plastosciara (Plastosciara) latipons Hardy, 1956 syn. n.; Hyperlasion wasmanni (Schmitz, 1918) = Scythropochroa magnisensoria Hardy, 1956 syn. n.; and Scatopsciara hoyti (Hardy, 1956) = Sc. spiculata Vilkamaa, Hippa Mohrig, 2012 syn. n. These four species are new reports for Hawai'i, three of them are new to science: Epidapus pallidus (Séguy), Pseudolycoriella nigrofemoralis Mohrig, Kauschke Broadley sp. n., Scatopsciara hardyi Mohrig, Kauschke Broadley sp. n. and Sc. steffani Mohrig, Kauschke Broadley sp. n. A lectotype was designated for Bradysia radicum (Brunetti) in order to fix the name. All new and revised species are figured.        The species Bradysia bishopi Steffan, 1973, B. ocellaris (Comstock, 1882), B. radicum (Brunetti, 1912), Cosmosciara hartii (Johannsen, 1912), Pseudolycoriella planiforceps (Steffan, 1971) and Scatopsciara steffani Mohrig, Kauschke Broadley sp. n. are reported from the Galápagos Islands.

Alpheus leptochiroides De Man, 1909, a poorly known deep-water snapping shrimp with a unique third maxilliped (Malacostraca: Decapoda: Alpheidae).

Alpheus leptochiroides De Man, 1909, a poorly-known species originally described from the Kai Islands in eastern Indonesia, is reported from Kavieng, eastern Papua New Guinea, representing only the second record of this snapping shrimp and slightly extending its distribution range into the tropical western Pacific. The original description was based on a relatively young specimen, whereas the Kavieng specimen is clearly an adult male. Most importantly, several rather important characters of the species were omitted and/or not illustrated by De Man, including the unique and diagnostic rounded cuticular expansions on several areas of the third maxilliped, not present in any other alpheid shrimp. Therefore, a full redescription of the species is provided, with new detailed illustrations.

Study of Colombia North Wiwa El Encanto Amerindians HLA- genes: Pacific Islanders relatedness.

We have studied Wiwa/Sanja Amerindians HLA-A, -B, -C, -DRB1 and DQB1 allele frequencies and extended haplotypes in 52 unrelated individuals from "El Encanto" town at Guanachaca riverside. High frequency alleles were in general present in other Amerindian populations. Also, three extended haplotypes and eight ones were respectively both "new found" and already described in Amerindians from North, Central and South America, including Lakota-Sioux, Mayas, Teeneks, Quechua and Aymaras. Analyses of HLA-A*24:02 and -C*01:02 Wiwa high frequency alleles suggested a specific relatedness with another Amerindian and Pacific Islander ethnic groups (these two particular alleles bearing in high frequencies); they include New Zealand Maoris, Taiwanese, Japanese, Papua New Guinea, and Samoans among others. This may indicate that selective forces are maintaining these two alleles high frequency within this wide American/Pacific area.

A description of Macrobiotus horningi sp. nov. and redescriptions of M. maculatus comb. nov. Iharos, 1973 and M. rawsoni Horning et al., 1978 (Tardigrada: Eutardigrada: Macrobiotidae: hufelandi group).

We examined microscope slides from Horning and Iharos tardigrade collections from Museum of New Zealand Te Papa Tongarewa in Wellington and Hungarian Natural History Museum in Budapest with species of the Macrobiotus hufelandi group. Based on this material we describe one new species, Macrobiotus horningi sp. nov., and re-describe two others, M. maculatus comb. nov. Iharos, 1973 and M. rawsoni Horning et al., 1978. With the oral cavity armature of the patagonicus type and chorion of the hufelandi type, Macrobiotus horningi sp. nov. is most similar to: M. personatus Biserov, 1990, M. sandrae Bertolani & Rebecchi, 1993, M. serratus Bertolani et al., 1996, M. sottilei Pilato et al., 2012, M. terminalis Bertolani & Rebecchi, 1993 and M. vladimiri Bertolani et al., 2011, but it differs from them in morphological and morphometric traits. With eggs of the maculatus type, M. maculatus comb. nov. is most similar to: M. biserovi Bertolani et al., 1996, M. denticulatus Dastych, 2002, M. macrocalix Bertolani & Rebecchi, 1993 and M. ramoli Dastych, 2005, but differs from them in morphological and morphometric characters.

Phylogenetic trophic specialization: a robust comparison of herbivorous guilds.

Resource specialization is a key concept in ecology, but it is unexpectedly difficult to parameterize. Differences in resource availability, sampling effort and abundances preclude comparisons of incompletely sampled biotic interaction webs. Here, we extend the distance-based specialization index (DSI) that measures trophic specialization by taking resource phylogenetic relatedness and availability into account into a rescaled version, DSI*. It is a versatile metric of specialization that expands considerably the scope and applicability, hence the usefulness, of DSI. The new metric also accounts for differences in abundance and sampling effort of consumers, which enables robust comparisons among distinct guilds of consumers. It also provides an abundance threshold for the reliability of the metric for rare species, a very desirable property given the difficulty of assessing any aspect of rare species accurately. We apply DSI* to an extensive dataset on interactions between insect herbivores from four folivorous guilds and their host plants in Papua New Guinean rainforests. We demonstrate that DSI*, contrary to the original DSI, is largely independent of sample size and weakly and non-linearly related with several host specificity measures that do not adjust for plant phylogeny. Thus, DSI* provides further insights into host specificity patterns; moreover, it is robust to the number and phylogenetic diversity of plant species selected to be sampled for herbivores. DSI* can be used for a broad range of comparisons of distinct feeding guilds, geographical locations and ecological conditions. This is a key advance in elucidating the interaction structure and evolution of highly diversified systems.

Elimination of TSWV from impatiens hawkerii Bull. and regeneration of virus-free plant

The possibility for obtaining virus free plants from Impatiens hawkerii Bull. shoots infected with Tomato spotted wilt virus (TSWV) through meristem-tip culture was examined. TSWV presence in I. hawkerii plants was detected by DAS-ELISA and RT-PCR and identification of the virus was confirmed by sequencing one of the chosen isolate (GenBank Accesion CQ132190). Meristem-tip explants (0.3-1.5 mm) from virus-infected shoots are cultured on MS media supplemented with different concentrations of the cytokinins, CPPU or TDZ (0.01-1.0 uM), respectively. Using this system, a large number of in vitro shoots could be produced from a single explant. Also, cytokinins showed a stimulatory effect on the length, fresh and dry weights of the newly formed shoots. Plant pigments content in I. hawkerii shoots increased significantly in the presence of cytokinins. Rooting of shoots was spontaneous on the same media. Rooted plantlets were transferred to soil where 97 percent successfully acclimatized. By DAS-ELISA and RT-PCR, 80 percent of the in vitro plantlets were shown to be a virus-free. Considering these, the present protocol seems to be an efficient method for in vitro generation of virus-free I. hawkerii plantlets by meristem tip cultures.

Comparison of effects of breast-feeding practices on birth-spacing in three societies: nomadic Turkana, Gainj, and Quechua.

Variation in the duration and pattern of breast-feeding contributes significantly to inter-population differences in fertility. In this paper, measures of suckling frequency and intensity are used to compare the effects of breast-feeding practices on the duration of lactational amenorrhoea, and on the length of the birth interval in three prospective studies undertaken during the 1980s, among Quechua Indians of Peru, Turkana nomads of Kenya, and Gainj of Papua New Guinea. In all three societies, lactation is prolonged well into the second year postpartum, and frequent, on-demand breast-feeding is the norm. However, the duration of lactational amenorrhoea and the length of birth intervals vary considerably. Breast-feeding patterns among Gainj and Turkana are similar, but Turkana women resume menses some 3 months earlier than do the Gainj. The average birth interval among the Gainj exceeds that of nomadic Turkana by over 15 months. Suckling activity decreases significantly with increasing age of nurslings among both Gainj and Quechua, but not among Turkana. Earlier resumption of menses among Turkana women may be linked to the unpredictable demands of the pastoral system, which increase day-to-day variation in the number of periods of on-demand breast-feeding, although not in suckling patterns. This effect is independent of the age of infants. The short birth intervals of Turkana women, relative to those of the Gainj, may be related to early supplementation of Turkana nurslings with butterfat and animals' milk, which reduces energetic demands on lactating women at risk of negative energy balance.

PIP: Between July 1989 and late February 1990. an anthropologist observed breast feeding patterns of 24 mother-infant pairs of the nomadic Ngisonyoka Turkana in Kenya to determine suckling frequency and intensity and their effect on the duration of lactational amenorrhea and the length of the birth interval. She compared her results with those of studies of the Gainj of Papua New Guinea and of the Quechua Indians of Peru, studies which used the same unite of analysis as the Turkana study. Prolonged lactation and frequent, on-demand ruled in each group. Turkana infants suckled all day and night, with each nursing period being 1-2 minutes long and with 10-15 minutes between each period. The Gainj also had prolonged lactation and similar nursing sessions. On the other hand, the Quechua clumped their breast feeding sessions, which were longer than those of both the Turkana and the Gainj. Turkana birth intervals were shorter than those of Gainj (29 vs. 44.3 months). Turkana women also had a higher fertility rate than did the Gainj (6.5 vs. 4 live births). Suckling activity fell considerably as age increased for Gainj and Quechua infants, but not for Turkana infants. Early introduction of butterfat from goats' and camels' milk during the first few weeks after birth and the daily difference in amount of suckling during the lactational period due to variable maternal work schedules (based on the labor demand of the pastoral system of the Turkana) reduced the effect of age. In conclusion, differences in the length and pattern of breast feeding practices account for much of the interpopulation variation in fertility.

A disaster waiting to happen.

PIP: 250 million indigenous or first peoples inhabit 70 countries throughout the world. They are almost universally marginalized, impoverished, and denied access to adequate health care. They are therefore subjected to poor health, malnutrition, endemic sexually transmitted diseases, and a myriad of social problems including prostitution, displacement, resettlement, and substance abuse. Lack of condom availability and use and the plethora of languages in which interventions must be communicated also pose obstacles. 860 languages are spoken by the 3 million first peoples in Papua New Guinea. As HIV sweeps across continents and through populations worldwide, these aforementioned conditions certainly predispose indigenous peoples to the risk of contracting and spreading HIV. The lack of reliable reporting systems to monitor health conditions and the incidence and prevalence of HIV among indigenous populations, and the corresponding lack of hard data make it impossible to reliably estimate the extent of HIV therein. Factors which increase the likelihood that HIV and AIDS will reach epidemic proportions among the indigenous are specially described for Amazonia, Guatemala, Papua New Guinea, Thailand, India, Africa, Australia, Canada, and the US.^ieng

Interactive radio instruction: developing instructional methods.

The USAID has, since 1972, funded the development of a new methodology for educational radio for young children through 3 projects: the Radio Mathematics PRoject of Nicaragua, the Radio Language Arts Project of Kenya, and the Radio Science PRoject of Papua New Guinea. These projects developed math programs for grades 1-4 and English as a second language for grades 1-3; programs to teach science in grades 4-6 are now being developed. Appropriate techniques were developed to engage young children actively in the learning process. Lessons are planned as a "conversation" between the children and the radio; scripts are written as 1/2 of a dialogue, with pauses carefully timed so that written as 12 of a dialogue, with pauses carefully timed so that students can contribute their 1/2. Teaching techniques used in all 3 projects include choral responses, simultaneous individual seatwork, and activities using simple materials such as pebbles and rulers. Certain techniques were specific to the subject being taught, or to the circumstances in which the lessons were to be used. Patterned oral drill was used frequently in the English lessons, including sound-cued drills. "Deferred" oral responses were used often in the math lessons. In this method, the children are instructed to solve a problem silently, not giving the answer aloud until requested, thus allowing time for even the slower children to participate. "One-child" questions were used in both English and science: the radio asks a question to be answered by a single child, who is selected on the spot by the classroom teacher. This allows for open-ended questions, but also requires constant supervision of the classroom teacher. Songs and games were used in all programs, and extensively for didactic purposes in the teaching of English. Instructions for science activities are often more complex than in other courses, particularly when the children are using science apparatus, especially when they work in pairs to share scarce equipment, a cost-saving device developed specifically for use in the science course.

Low forager fertility: demographic characteristic or methodological artifact?

PIP: Anthropological literature has long held that traditional foraging populations have low fertility levels. This research examines the number of live births per woman for 9 non-western forager groups who have been investigated in the last 20 years. Data are derived from 1) birth registration systems, 2) surveys conducted during short stays with the group, and 3) surveys conducted as part of longer ethnographic studies. Fertility rates for the groups are 1) 3.5 for the Kiunga area of Papula, New Guinea, 2) 4.2 for Northern Territory Australian aborigines, 3) 5.0 for Cayapo groups in Brazil, 4) 5.3 for Hiowe people of New Guinea, 5) 5.7 for 3 Xavante groups in Brazil, 6) 6.0 for West Alaskan Eskimos, 7) 6.9 for Nunamiut Eskimos of Alaska, 8) 7.6 for the Bisman-Asmat group of Indonesian New Guinea, and 9) 8.4 for the Winikina Warao of Venezuela. Since fertility rates are highest when ethnographic studies, which allow for question clarification, memory recall, and cross-checking, are used, the author believes that high fertility rates most accurately represent forager societies. Research on the Dobe ]Kung (fertility rate - 4.7), may contradict these findings, but the author believes that the ]Kung fertility rates are higher than reported because of infanticide practices, sexual abstinence during lactation, and disease related fertility problems. In summary, the study finds high fertility (7-9 births) in traditional foraging societies. Although the study examines small populations, correlation strength and overall consistency help verify the results.^ieng

Population pressure, mobility, and socio-economic change in mountainous environments: regions of refuge in comparative perspective.

This paper examines demographic and socioeconomic forces in high isolated parts of the world. These regions were not always isolated; they were once the centers of their own particular worlds which, in some cases, were complex civilizations. It is their relegation to the very periphery of the modern world that is the principal theme of this paper. Population migration, both into and out of these areas, has played a vital role in linking mountainous regions to the wider world. Particular attention is paid to the part played by the traditional mobility patterns and by the resource base of the mountains in the transformation of integral, self-sufficient cultures into dependent, subservient part-cultures, the regions of refuge. The effect of population pressure and the development of outmigration from the Andes of Peru is examined first and the analysis extended to the highlands of Papua-New Guinea and to several regions in the Himalayan arc to provide the background for a comparative study of regions of refuge.

Promoting breastfeeding: a national responsibility.

PIP: Discusses the rationale behind national scale programs to support breastfeeding; assesses the elements needed for successful supply and demand interventions; and examines the national strategies of Jamaica, Papua New Guinea, and Nicaragua, where breastfeeding programs appear likely to succeed. Governments can promote the health, economic, psychosocial, and contraceptive benefits of breastfeeding in the areas of medical training, public education, community mobilization, and national legislation. Supply and demand policies which influence the opportunity and motivation for individual women to breastfeed are tools available to national policymakers and health workers. Demand interventions are educational, but supply interventions are usually regulatory, require political commitment and a regulatory infrastructure, and must be well organized and monitored to be successful. Very few countries have adopted supply interventions since they are more politically risky and can affect powerful economic interests. Demand interventions involving education have been more common, while a few countries have legislated marketing regulations for sale of infant formula. Review of national efforts to promote breastfeeding suggests the need to combine both supply and demand interventions.^ieng