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1.
Oecologia ; 2024 Sep 04.
Article in English | MEDLINE | ID: mdl-39230725

ABSTRACT

Human disturbance compromises the ecological integrity of forests, negatively affecting associated species. Assessing the impact of forest integrity on biodiversity is complex due to the interplay of various human activities, ecological factors, and their interactions. Current large-scale indices assess forest integrity but often lack a direct connection to the biotic environment. We tested the effectiveness of the global Forest Landscape Integrity Index (FLII) in evaluating aspects of anthropogenic forest degradation on the biotic community. We analyzed the relationship between changes in the ecological integrity of Finnish forests and variations in mammal species abundance, using the number of tracks from 17 different species collected during the winter seasons between 2016 and 2020 in south-central Finland. Beyond the FLII, we analyzed forest and canopy cover to enhance the accuracy of habitat preference assessments. We found that the FLII captures the varying degrees of forest integrity, as reflected by the correlation between the abundance of winter tracks and the FLII for most mammals. Species that were positively associated with forest integrity were all native to the boreal forest, while mammals that adapt well to human-disturbed environments including two invasive species were more common in lower FLII forests. Significant differences in habitat preferences were also observed in relation to forest and canopy cover, revealing additional nuances that the FLII alone did not capture. This study demonstrates that the FLII, when combined with a comprehensive dataset and supplemented with region-specific factors, can assess species' adaptability to human-modified forests, aiding in the development of conservation strategies.

2.
Glob Chang Biol ; 30(9): e17516, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39311643

ABSTRACT

Forests play a crucial role in global carbon cycling by absorbing and storing significant amounts of atmospheric carbon dioxide. Although boreal forests contribute to approximately 45% of the total forest carbon sink, tree growth and soil carbon sequestration are constrained by nutrient availability. Here, we examine if long-term nutrient input enhances tree productivity and whether this leads to carbon storage or whether stimulated microbial decomposition of organic matter limits soil carbon accumulation. Over six decades, nitrogen, phosphorus, and calcium were supplied to a Pinus sylvestris-dominated boreal forest. We found that nitrogen fertilization alone or together with calcium and/or phosphorus increased tree biomass production by 50% and soil carbon sequestration by 65% compared to unfertilized plots. However, the nonlinear relationship observed between tree productivity and soil carbon stock across treatments suggests microbial regulation. When phosphorus was co-applied with nitrogen, it acidified the soil, increased fungal biomass, altered microbial community composition, and enhanced biopolymer degradation capabilities. While no evidence of competition between ectomycorrhizal and saprotrophic fungi has been observed, key functional groups with the potential to reduce carbon stocks were identified. In contrast, when nitrogen was added without phosphorus, it increased soil carbon sequestration because microbial activity was likely limited by phosphorus availability. In conclusion, the addition of nitrogen to boreal forests may contribute to global warming mitigation, but this effect is context dependent.


Subject(s)
Carbon , Fertilizers , Nitrogen , Phosphorus , Soil Microbiology , Soil , Phosphorus/metabolism , Soil/chemistry , Nitrogen/metabolism , Fertilizers/analysis , Carbon/metabolism , Carbon Sequestration , Biomass , Taiga , Pinus sylvestris/growth & development , Pinus sylvestris/metabolism , Pinus sylvestris/microbiology , Forests , Trees/growth & development , Trees/metabolism , Calcium/metabolism , Calcium/analysis
3.
PeerJ ; 12: e17769, 2024.
Article in English | MEDLINE | ID: mdl-39329142

ABSTRACT

Leaf litter decomposition, a crucial component of the global carbon cycle, relies on the pivotal role played by microorganisms. However, despite their ecological importance, leaf-litter-decomposing microorganism taxonomic and functional diversity needs additional study. This study explores the taxonomic composition, dynamics, and functional role of microbial communities that decompose leaf litter of forest-forming tree species in two ecologically unique regions of Europe. Twenty-nine microbial metagenomes isolated from the leaf litter of eight forest-forming species of woody plants were investigated by Illumina technology using read- and assembly-based approaches of sequences analysis. The taxonomic structure of the microbial community varies depending on the stage of litter decomposition; however, the community's core is formed by Pseudomonas, Sphingomonas, Stenotrophomonas, and Pedobacter genera of Bacteria and by Aureobasidium, Penicillium, Venturia genera of Fungi. A comparative analysis of the taxonomic structure and composition of the microbial communities revealed that in both regions, seasonal changes in structure take place; however, there is no clear pattern in its dynamics. Functional gene analysis of MAGs revealed numerous metabolic profiles associated with leaf litter degradation. This highlights the diverse metabolic capabilities of microbial communities and their implications for ecosystem processes, including the production of volatile organic compounds (VOCs) during organic matter decomposition. This study provides important advances in understanding of ecosystem processes and the carbon cycle, underscoring the need to unravel the intricacies of microbial communities within these contexts.


Subject(s)
Forests , Microbiota , Plant Leaves , Seasons , Plant Leaves/microbiology , Plant Leaves/metabolism , Microbiota/genetics , Microbiota/physiology , Bacteria/genetics , Bacteria/classification , Bacteria/metabolism , Fungi/genetics , Fungi/classification , Fungi/metabolism , Fungi/isolation & purification , Whole Genome Sequencing , Metagenome/genetics , Trees/microbiology
4.
Oecologia ; 2024 Sep 28.
Article in English | MEDLINE | ID: mdl-39341907

ABSTRACT

The distribution of species in a patchy habitat may be influenced by competitive interactions. The dominant and highly competitive boreal ant species belong to the Formica rufa group. A pair of species, Formica aquilonia and Formica polyctena, require extensive territories due to their multi-nest breeding habits. The coexistence and habitat patterns of these two wood ant species in the boreal forest landscape were investigated. Forest characteristics in the vicinity of nests in forest patches were similar for both species, but they did not coexist in the same sampling plots of 0.79 ha in forest patches, indicating competitive exclusion. The sampling plots in large forest patches were more occupied by F. aquilonia, while no such association was found for F. polyctena. At a larger spatial scale (78.5 ha), we found that F. polyctena was more tolerant of smaller forest patches than F. aquilonia suggesting that these two ant species can coexist in moderately fragmented forest landscapes. However, forest habitat loss, fragmentation and climate-induced changes in forest tree structure may shift the species balance in favour of F. polyctena over F. aquilonia in the future.

5.
Sci Rep ; 14(1): 22168, 2024 09 27.
Article in English | MEDLINE | ID: mdl-39333734

ABSTRACT

Moss-microbe interactions contribute to ecosystem processes in boreal forests. Yet, how host-specific characteristics and the environment drive the composition and metabolic potential of moss microbiomes is still poorly understood. In this study, we use shotgun metagenomics to identify the taxonomy and metabolic potential of the bacteria of four moss species of the boreal forests of Northern Québec, Canada. To characterize moss bacterial community composition and diversity, we assembled the genomes of 110 potentially novel bacterial species. Our results highlight that moss genus, species, gametophyte section, and to a lesser extent soil pH and soil temperature, drive moss-associated bacterial community composition and diversity. In the brown gametophyte section, two Stigonema spp. showed partial pathway completeness for photosynthesis and nitrogen fixation, while all brown-associated Hyphomicrobiales had complete assimilatory nitrate reduction pathways and many nearly complete carbon fixation pathways. Several brown-associated species showed partial to complete pathways for coenzyme M and F420 biosynthesis, important for methane metabolism. In addition, green-associated Hyphomicrobiales (Methylobacteria spp.) displayed potential for the anoxygenic photosystem II pathway. Overall, our findings demonstrate how host-specific characteristics and environmental factors shape the composition and metabolic potential of moss bacteria, highlighting their roles in carbon fixation, nitrogen cycling, and methane metabolism in boreal forests.


Subject(s)
Bacteria , Bryophyta , Metagenome , Bryophyta/microbiology , Bacteria/genetics , Bacteria/metabolism , Bacteria/classification , Taiga , Metagenomics/methods , Microbiota , Quebec , Nitrogen Fixation , Photosynthesis
6.
Nat Geosci ; 17(9): 866-873, 2024.
Article in English | MEDLINE | ID: mdl-39267694

ABSTRACT

Wildfire activity in Arctic and boreal regions is rapidly increasing, with severe consequences for climate and human health. Regional long-term variations in fire frequency and intensity characterize fire regimes. The spatial variability in Arctic-boreal fire regimes and their environmental and anthropogenic drivers, however, remain poorly understood. Here we present a fire tracking system to map the sub-daily evolution of all circumpolar Arctic-boreal fires between 2012 and 2023 using 375 m Visible Infrared Imaging Radiometer Suite active fire detections and the resulting dataset of the ignition time, location, size, duration, spread and intensity of individual fires. We use this dataset to classify the Arctic-boreal biomes into seven distinct 'pyroregions' with unique climatic and geographic environments. We find that these pyroregions exhibit varying responses to environmental drivers, with boreal North America, eastern Siberia and northern tundra regions showing the highest sensitivity to climate and lightning density. In addition, anthropogenic factors play an important role in influencing fire number and size, interacting with other factors. Understanding the spatial variability of fire regimes and its interconnected drivers in the Arctic-boreal domain is important for improving future predictions of fire activity and identifying areas at risk for extreme events.

7.
Article in English | MEDLINE | ID: mdl-39302583

ABSTRACT

Survival and reproduction tests were conducted using two native springtail (subclass: Collembola) species to determine the toxicity of a fine-grained (< 0.005 - 0.425 mm) soil from an industrial site located in the Canadian boreal ecozone. Accidental petroleum hydrocarbon (PHC) release continuously occurred at this site until 1998, resulting in a total hydrocarbon concentration of 12,800 mg/kg (soil dry weight). Subfractions of the PHC-contaminated soil were characterized using Canadian Council of Ministers of the Environment Fractions, which are based on effective carbon numbers (nC). Fraction 2 (> nC10 to nC16) was measured at 8400 mg/kg and Fraction 3 (> nC16 to nC34) at 4250 mg/kg in the contaminated soil. Age-synchronized colonies of Folsomia candida and Proisotoma minuta were subject to 0%, 25%, 50%, 75%, and 100% relative contamination mixtures of the PHC-contaminated and background site soil (< 100 mg/kg total PHCs) for 28 and 21 days, respectively. Survival and reproduction decreased significantly (Kruskal-Wallis Tests: p < 0.05, df = 4.0) in treatments of the contaminated site soil compared to the background soil. In both species, the most significant decline in survival and reproduction occurred between the 0% and 25% contaminated soil. Toxicity responses in the two springtails were ascribed to the standardized test design, short lifespans, and high fecundity in both species. This study showed that 25 + years of soil weathering has not eliminated the toxicity of fine-grained PHC-contaminated soil on two native terrestrial springtail species. Adverse effects to springtail health were attributed to exposure to soils dominated by genotoxic PHC Fraction 2 compounds and slow weathering processes due to the cold climate at the site.

8.
Ying Yong Sheng Tai Xue Bao ; 35(6): 1725-1734, 2024 Jun.
Article in Chinese | MEDLINE | ID: mdl-39235032

ABSTRACT

Climate warming and drying has led to a sharp increase in nitrogen (N) emissions from the boreal peatland soils, but the underlying microbial-mediated mechanism is still unclear. We reviewed the responses of soil N transformation and emission in alpine peatland to temperature increases and water table changes, the interaction between soil anaerobic ammonia oxidation (Anammox) and NO3- dissimilatory reduction processes, and soil N2O production pathways and their contributions. There are several knowledge gaps. First, the amount of N loss in peatlands in alpine areas is seriously underestimated because most studies focused only on soil N2O emissions and ignored the release of N2. Second, the contribution of Anammox process to N2 emissions from peatlands is not quantified. Third, there is a lack of quantification of the relative contributions of Anammox, bacterial denitrification, and fungal co-denitrification processes to N2 loss. Finally, the decoupling mechanism of Anammox and NO3- reduction processes under a warming and drying climate scenario is not clear. Considering aforementioned shortages in previous studies, we proposed the directions and contents for future research. Through building an experimental platform with field warming and water level controlling, combining stable isotope, molecular biology, and metagenomics technology, the magnitude, composition ratio and main controlling factors of N emissions (N2O, NO, and N2) in boreal peatlands should be systematically investigated. The interaction among the main N loss processes in soils as well as the relative contributions of nitrification, anaerobic ammonia oxidation, and denitrification to N2O and N2 productions should be investigated and quantified. Furthermore, the sensitive microbial groups and the coupling between soil N transformations and microbial community succession should be clarified to reveal the microbiological mechanism underlying the responses of soil N turnover process to climate warming and drying.


Subject(s)
Climate Change , Global Warming , Nitrogen , Soil Microbiology , Soil , Soil/chemistry , Nitrogen/analysis , Nitrogen/metabolism , Ecosystem , Droughts , Nitrous Oxide/analysis , Nitrous Oxide/metabolism
9.
Ecol Evol ; 14(8): e70077, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39114162

ABSTRACT

Tree regeneration shapes forest carbon dynamics by determining long-term forest composition and structure, which suggests that threats to natural regeneration may diminish the capacity of forests to replace live tree carbon transferred to the atmosphere or other pools through tree mortality. Yet, the potential implications of tree regeneration patterns for future carbon dynamics have been sparsely studied. We used forest inventory plots to investigate whether the composition of existing tree regeneration is consistent with aboveground carbon stock loss, replacement, or gain for forests across the northeastern and midwestern USA, leveraging a recently developed method to predict the likelihood of sapling recruitment from seedling abundance tallied within six seedling height classes. A comparison of carbon stock predictions from tree and seedling composition suggested that 29% of plots were poised to lose carbon based on seedling composition, 55% were poised for replacement of carbon stocks (<5 Mg ha-1 difference) and 16% were poised to gain carbon. Forests predicted to lose carbon tended to be on steeper slopes, at lower latitudes, and in rolling upland environments. Although plots predicted to gain and lose carbon had similar stand ages, carbon loss plots had greater current carbon stocks. Synthesis and applications. Our results demonstrate the utility of considering tree regeneration through the lens of carbon replacement to develop effective management strategies to secure long-term carbon storage and resilience in the context of global change. Forests poised to lose C due to climate change and other stressors could be prioritized for regeneration strategies that enhance long-term carbon resilience and stewardship.

10.
Oecologia ; 2024 Aug 12.
Article in English | MEDLINE | ID: mdl-39133236

ABSTRACT

The N2-fixing trees Alnus spp. have been widely encroaching into boreal peatlands, but the nutrient responses of native vascular plants remain unclear. Here, we compared nutrient concentrations and isotope signal of six common plants (Betula fruticosa, Salix rosmarinifolia, Vaccinium uliginosum, Rhododendron tomentosum, Chamaedaphne calyculata, and Eriophorum vaginatum) between Alnus hirsuta island and open peatland and assessed plant nutrient responses to A. hirsuta encroachment in boreal peatlands. Alnus hirsuta encroachment increased nitrogen (N) concentration of leaf, branch, and stem. Despite no significant interspecific difference in branch and stem, the increment magnitude of leaf N concentration varied among species, with greatest magnitude for R. tomentosum (55.1% ± 40.7%) and lowest for E. vaginatum (9.80% ± 4.40%) and B. fruticosa (18.4% ± 10.7%). Except for E. vaginatum, the significant increase in δ15N occurred for all organs of shrubs, with interspecific differences in change of leaf δ15N. According to the mass balance equation involving leaf δ15N, R. tomentosum and E. vaginatum, respectively, obtained highest (40.5% ± 19.8%) and lowest proportions (-14.0% ± 30.5%) of N from A. hirsuta. Moreover, the increment magnitudes of leaf N concentration showed a positive linear relationship with the proportion of N from A. hirsuta. In addition, A. hirsuta encroachment reduced leaf phosphorus (P) concentration of deciduous shrubs (i.e., B. fruticosa, S. rosmarinifolia, and V. uliginosum), thus increasing N:P ratio. These findings indicate that Alnus encroachment improves native plant N status and selectively intensifies P limitation of native deciduous shrubs, and highlight that the N acquisition from the symbiotic N2-fixing system regulates plant N responses in boreal peatlands.

11.
Plant Cell Environ ; 2024 Aug 05.
Article in English | MEDLINE | ID: mdl-39101396

ABSTRACT

Photosynthetic acclimation to both warming and elevated CO2 of boreal trees remains a key uncertainty in modelling the response of photosynthesis to future climates. We investigated the impact of increased growth temperature and elevated CO2 on photosynthetic capacity (Vcmax and Jmax) in mature trees of two North American boreal conifers, tamarack and black spruce. We show that Vcmax and Jmax at a standard temperature of 25°C did not change with warming, while Vcmax and Jmax at their thermal optima (Topt) and growth temperature (Tg) increased. Moreover, Vcmax and Jmax at either 25°C, Topt or Tg decreased with elevated CO2. The Jmax/Vcmax ratio decreased with warming when assessed at both Topt and Tg but did not significantly vary at 25°C. The Jmax/Vcmax increased with elevated CO2 at either reference temperature. We found no significant interaction between warming and elevated CO2 on all traits. If this lack of interaction between warming and elevated CO2 on the Vcmax, Jmax and Jmax/Vcmax ratio is a general trend, it would have significant implications for improving photosynthesis representation in vegetation models. However, future research is required to investigate the widespread nature of this response in a larger number of species and biomes.

12.
Plant Cell Environ ; 2024 Aug 27.
Article in English | MEDLINE | ID: mdl-39189985

ABSTRACT

Understanding the dynamics of δ13C and δ18O in modern resin is crucial for interpreting (sub)fossilized resin records and resin production dynamics. We measured the δ13C and δ18O offsets between resin acids and their precursor molecules in the top-canopy twigs and breast-height stems of mature Pinus sylvestris trees. We also investigated the physiological and environmental signals imprinted in resin δ13C and δ18O at an intra-seasonal scale. Resin δ13C was c. 2‰ lower than sucrose δ13C, in both twigs and stems, likely due to the loss of 13C-enriched C-1 atoms of pyruvate during isoprene formation and kinetic isotope effects during diterpene synthesis. Resin δ18O was c. 20‰ higher than xylem water δ18O and c. 20‰ lower than δ18O of water-soluble carbohydrates, possibly caused by discrimination against 18O during O2-based diterpene oxidation and 35%-50% oxygen atom exchange with water. Resin δ13C and δ18O recorded a strong signal of soil water potential; however, their overall capacity to infer intraseasonal environmental changes was limited by their temporal, within-tree and among-tree variations. Future studies should validate the potential isotope fractionation mechanisms associated with resin synthesis and explore the use of resin δ13C and δ18O as a long-term proxy for physiological and environmental changes.

13.
Tree Physiol ; 44(8)2024 Aug 03.
Article in English | MEDLINE | ID: mdl-38976011

ABSTRACT

In forests, a significant proportion of the carbon fixed by trees during photosynthesis is transported belowground along the conducting phloem, so variations in phloem anatomy can lead to variations in transport capacity. Phloem conductance at tree level (Ktree) is also affected by tree height. Both the phloem anatomy and the tree size change during ontogeny, and also differ under different environmental conditions. The goal of our work was to identify the main drivers of variation in Ktree in Scots pine trees growing in natural boreal forests. We conducted a phloem anatomical study and calculated Ktree in trees of three age groups growing in different climatic conditions along a latitudinal gradient from south to north. We found that Ktree was maintained at the same level in actively growing pine trees (25-80-years-old) but increased in old-aged trees (180-190-years-old), possibly reflecting the shift in source-sink relationships of aboveground and belowground parts of trees. Trees of the same age group growing in different climatic conditions demonstrated similar values of Ktree due to coordinated changes in the phloem anatomy and the tree height. In general, the negative influence of tree height on Ktree is offset by the positive influence of phloem width (or trunk diameter) and sieve cell diameter. The exception was young trees growing in the transition zone of the northern taiga subzone to the tundra, where Ktree was the highest in its age group and even exceeded Ktree of middle-aged trees.


Subject(s)
Climate , Phloem , Pinus sylvestris , Phloem/physiology , Phloem/anatomy & histology , Pinus sylvestris/growth & development , Pinus sylvestris/physiology , Pinus sylvestris/anatomy & histology , Trees/physiology , Trees/growth & development , Trees/anatomy & histology , Forests , Taiga
14.
Plants (Basel) ; 13(14)2024 Jul 09.
Article in English | MEDLINE | ID: mdl-39065418

ABSTRACT

The impact of frequent water deficits on dominant tree species in boreal forests has received increased attention, particularly towards addressing the global climate change scenarios. However, the impacts of coupled light intensity and water deficit in the regeneration and growth of Larix gmelinii seedlings, a dominant species in China's boreal forests, are still unclear. We conducted a dual-factor controlled experiment with four light intensities (natural sunlight, 50% shading, 75% shading, and 90% shading) and three soil water conditions (80%, 60%, and 40% soil saturated water content). The results showed that the coupling of light and water has a significant effect on the growth and development of Larix gmelinii seedlings. In 40% of the saturated soil moisture content, net photosynthetic rate, transpiration rate, chlorophyll a, and total phenol-leaf were significantly lower than the same light conditions under 80% soil saturated water content. Under the coupling treatment of 60% soil saturated water content and 50% shading treatment, the plant height increment, net photosynthetic rate, stomatal conductance, transpiration rate, chlorophyll a, and phenolic compound content were significantly higher than those of other coupling treatments; however, more than 75% shading inhibited photosynthetic parameters, chlorophyll a, total flavonoid-leaf, and total flavonoid-branch. Our results have important implications for forest management practices; they provide a scientific reference for the early growth of Larix gmelinii seedlings under the coupling of light and water and promote the survival and growth of seedlings.

15.
Infect Dis Rep ; 16(4): 543-560, 2024 Jun 26.
Article in English | MEDLINE | ID: mdl-39051241

ABSTRACT

Parasitic diseases, such as malaria, are an immense burden to many low- and middle-income countries. In 2022, 249 million cases and 608,000 deaths were reported by the World Health Organization for malaria alone. Climate change, conflict, humanitarian crises, resource constraints and diverse biological challenges threaten progress in the elimination of malaria. Undeniably, the lack of a commercialized vaccine and the spread of drug-resistant parasites beg the need for novel approaches to treat this infectious disease. Most approaches for the development of antimalarials to date take inspiration from tropical or sub-tropical environments; however, it is necessary to expand our search. In this review, we highlight the origin of antimalarial treatments and propose new insights in the search for developing novel antiparasitic treatments. Plants and microorganisms living in harsh and cold environments, such as those found in the largely unexploited Northern Canadian boreal forest, often demonstrate interesting properties that are not found in other environments. Most prominently, the essential oil of Rhododendron tomentosum spp. Subarcticum from Nunavik and mortiamides isolated from Mortierella species found in Nunavut have shown promising activity against Plasmodium falciparum.

16.
Sci Total Environ ; 946: 174387, 2024 Oct 10.
Article in English | MEDLINE | ID: mdl-38955275

ABSTRACT

Northern temperate and boreal forests are large biomes playing crucial ecological and environmental roles, such as carbon sequestration. Despite being generally remote, these forests were exposed to anthropogenic nitrogen (N) deposition over the last two centuries and may still experience elevated N deposition as human activities expand towards high latitudes. However, the impacts of long-term high N deposition on these N-limited forest ecosystems remain unclear. For 18 years, we simulated N deposition by chronically adding ammonium nitrate at rates of 3 (LN treatment) and 10 (HN treatment) times the ambient N deposition estimated at the beginning of the experiment at a temperate sugar maple and a boreal balsam fir forest site, both located in northeastern America. LN and HN treatments corresponded respectively to addition of 26 kgN·ha-1·yr-1 and 85 kgN·ha-1·yr-1 at the temperate site and 17 kgN·ha-1·yr-1 and 57 kgN·ha-1·yr-1 at the boreal site. Between 2002 and 2018, soil solution was collected weekly during summer and concentrations of NO3-, NH4+, Ca2+ and pH were measured, totalling ~12,700-13,500 observations per variable on the study period. N treatments caused soil solution NO3-, NH4+ and Ca2+ concentrations to increase while reducing its pH. However, ion responses manifested through punctual high concentration events (predominantly on the HN plots) that were very rare and leached N quantity was extremely low at both sites. Therefore, N addition corresponding to 54 years (LN treatment) and 180 years (HN treatment) of accelerated ambient N deposition had overall small impacts on soil solution chemistry. Our results indicate an important N retention of northeastern American forests and an unexpected strong resilience of their soil solution chemistry to long-term simulated N deposition, potentially explained by the widespread N-limitation in high latitude ecosystems. This finding can help predict the future productivity of N-limited forests and improve forest management strategies in northeastern America.

17.
Ecol Evol ; 14(7): e11584, 2024 Jul.
Article in English | MEDLINE | ID: mdl-39026955

ABSTRACT

The Japanese subalpine zone is dominated by an ecologically important forest biome, subalpine coniferous forest, constituting a distinct assemblage of cold-tolerant angiosperm and conifer species. While being relatively intact compared to other forest biomes in Japan, subalpine coniferous forests are under significant threat from deer browsing, global warming and small population size effects. However, there is a severe lack of genetic resources available for this biome's major constituent plant species. This study aimed to develop chloroplast genome-based genetic resources for 12 widespread subalpine tree and shrub species (7 angiosperms and 5 conifers) via genome skimming of whole-genomic DNA using short reads (100-150 bp in length). For 10 species, whole chloroplast genomes were assembled via de novo-based methods from 4 to 10 individuals per species sampled from across their ranges in Japan and, for non-Japanese endemic species, elsewhere in northeast Asia. A total of 566 single nucleotide polymorphisms for Japanese samples and 768 for all samples (varying from 2 to 202 per species) were identified which were distributed in geographically restricted lineages in most species. In addition, between 9 and 58 polymorphic simple sequence repeat regions were identified per species. For two Ericaceae species (Rhododendron brachycarpum and Vaccinium vitis-idaea) characterised by large chloroplast genomes, de novo assembly failed, but single nucleotide polymorphisms could be identified using reference mapping. These data will be useful for genetic studies of species taxonomic relationships, investigating phylogeographic patterns within species, developing chloroplast-based markers for conservation genetic studies and has potential application for studies of environmental and ancient DNA.

18.
Sci Total Environ ; 947: 174680, 2024 Oct 15.
Article in English | MEDLINE | ID: mdl-38992363

ABSTRACT

Forest management pathways for nature-based climate solutions, such as variable retention harvesting (VRH), have been gaining traction in recent years; however, their net biochemical and biophysical impacts remain unknown. Here, we use a combination of close-range and satellite remote sensing, eddy covariance technique, and ground-based biometric measurements to investigate forest thinning density and aggregation that maintain ecosystem nutrients, enhance tree growth and provide a negative feedback to the local climate in a northern temperate coniferous forest stand in Ontario, Canada. Our results showed that soil carbon (C) and nitrogen (N) in VRH plots were significantly lower (p < 0.05) for all VRH treatments compared to unharvested plots. On average, soil C was reduced by -0.64 ± 0.22 Δ% C and N by -0.023 ± 0.008 Δ% N in VRH plots. We also observed the largest loss of soil C and N in open areas of aggregate plots. Furthermore, the changes in albedo resulting from VRH treatment were equivalent to removing a large amount of C from the atmosphere, ranging from 1.3 ± 0.2 kg C yr-1 m-2 in aggregate 33 % crown retention plots to 3.4 ± 0.5 kg C yr-1 m-2 in dispersed 33 % crown retention plots. Our findings indicate that spatially dispersed VRH resulted in minimal loss of soil C and N and the highest understory growth and C uptake, while enhanced tree growth and local cooling through increased albedo were observed in dispersed VRH plots with the fewest residual trees. These findings suggest that using the harvested trees from VRH in a way that avoids releasing C into the atmosphere makes dispersed VRH the preferred forest management pathway for nature-based climate solutions.

19.
Glob Chang Biol ; 30(7): e17401, 2024 Jul.
Article in English | MEDLINE | ID: mdl-39041207

ABSTRACT

Climate change in high latitude regions leads to both higher temperatures and more precipitation but their combined effects on terrestrial ecosystem processes are poorly understood. In nitrogen (N) limited and often moss-dominated tundra and boreal ecosystems, moss-associated N2 fixation is an important process that provides new N. We tested whether high mean annual precipitation enhanced experimental warming effects on growing season N2 fixation in three common arctic-boreal moss species adapted to different moisture conditions and evaluated their N contribution to the landscape level. We measured in situ N2 fixation rates in Hylocomium splendens, Pleurozium schreberi and Sphagnum spp. from June to September in subarctic tundra in Sweden. We exposed mosses occurring along a natural precipitation gradient (mean annual precipitation: 571-1155 mm) to 8 years of experimental summer warming using open-top chambers before our measurements. We modelled species-specific seasonal N input to the ecosystem at the colony and landscape level. Higher mean annual precipitation clearly increased N2 fixation, especially during peak growing season and in feather mosses. For Sphagnum-associated N2 fixation, high mean annual precipitation reversed a small negative warming response. By contrast, in the dry-adapted feather moss species higher mean annual precipitation led to negative warming effects. Modelled total growing season N inputs for Sphagnum spp. colonies were two to three times that of feather mosses at an area basis. However, at the landscape level where feather mosses were more abundant, they contributed 50% more N than Sphagnum. The discrepancy between modelled estimates of species-specific N input via N2 fixation at the moss core versus ecosystem scale, exemplify how moss cover is essential for evaluating impact of altered N2 fixation. Importantly, combined effects of warming and higher mean annual precipitation may not lead to similar responses across moss species, which could affect moss fitness and their abilities to buffer environmental changes.


Subject(s)
Bryophyta , Climate Change , Nitrogen Fixation , Rain , Seasons , Tundra , Bryophyta/physiology , Bryophyta/growth & development , Sweden
20.
Glob Chang Biol ; 30(7): e17424, 2024 Jul.
Article in English | MEDLINE | ID: mdl-39044435

ABSTRACT

Extreme droughts are globally increasing in frequency and severity. Most research on drought in forests focuses on the response of trees, while less is known about the impacts of drought on forest understory species and how these effects are moderated by the local environment. We assessed the impacts of a 45-day experimental summer drought on the performance of six boreal forest understory plants, using a transplant experiment with rainout shelters replicated across 25 sites. We recorded growth, vitality and reproduction immediately, 2 months, and 1 year after the simulated drought, and examined how differences in ambient soil moisture and canopy cover among sites influenced the effects of drought on the performance of each species. Drought negatively affected the growth and/or vitality of all species, but the effects were stronger and more persistent in the bryophytes than in the vascular plants. The two species associated with older forests, the moss Hylocomiastrum umbratum and the orchid Goodyera repens, suffered larger effects than the more generalist species included in the experiment. The drought reduced reproductive output in the moss Hylocomium splendens in the next growing season, but increased reproduction in the graminoid Luzula pilosa. Higher ambient soil moisture reduced some negative effects of drought on vascular plants. Both denser canopy cover and higher soil moisture alleviated drought effects on bryophytes, likely through alleviating cellular damage. Our experiment shows that boreal understory species can be adversely affected by drought and that effects might be stronger for bryophytes and species associated with older forests. Our results indicate that the effects of drought can vary over small spatial scales and that forest landscapes can be actively managed to alleviate drought effects on boreal forest biodiversity. For example, by managing the tree canopy and protecting hydrological networks.


Subject(s)
Droughts , Forests , Seasons , Soil , Soil/chemistry , Water/analysis , Taiga , Reproduction , Trees/growth & development
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