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1.
Article in English | MEDLINE | ID: mdl-39299218

ABSTRACT

Biothiols, characterized by thiol groups, exhibit remarkable affinity for certain metals, playing pivotal roles in intracellular and extracellular biological processes. Fluctuations in their levels profoundly impact overall physiological health. Despite the development of various probes for biothiol detection and quantification, their inability to monitor thiol-to-disulfide state transitions persists as a limitation. Given their association with pathologies, early detection remains imperative. Gold nanorod (AuNR)-based colorimetric probes have garnered attention for their utility in visual diagnostic assays. Herein, we present a cost-effective, and sensitive multicolor ratio measuring probe enabling on-site simultaneous identification, discrimination, and quantification of essential biothiols─cysteine (CYS), glutathione (GSH), cystine (CYSS), and glutathione disulfide (GSSG)─while also quantifying thiol-to-disulfide ratios. Our investigation clarifies the probe's functionality, elucidating etching and antietching mechanisms based on sulfhydryl group coordination with Hg2+. This coordination impedes gold amalgam formation, facilitating discriminative detection via AuNR size and aspect ratio modulation, validated by transmission electron microscopy. Notably, distinct rainbow-like fingerprint patterns were discernible both visually and spectroscopically for the aforementioned biothiols and their respective thiol-to-disulfide ratios. Subsequent qualitative and quantitative analyses via linear discriminant analysis (LDA) and partial least squares regression revealed linear correlations over broad concentration ranges (CYS: 1.9-40 µmol L-1, GSH: 3.2-200.0 µmol L-1, CYSS: 2.0-70.0 µmol L-1, GSSG: 3.7-100.0 µmol L-1), with detection limits of 0.66 µmol L-1 (CYS), 1.07 µmol L-1 (GSH), 0.69 µmol L-1 (CYSS), and 1.24 µmol L-1 (GSSG). Moreover, thiol-to-disulfide ratios exhibited linear patterns within 0.2-5 µmol L-1, with detection limits of 0.13 and 0.09 µmol L-1, and exceptional analytical sensitivities of 32.648 and 49.782 for (CYS/CYSS) and (GSH/GSSG), respectively. Lastly, we evaluated the probe's performance in complex matrices relative to aqueous media, both quantitatively and qualitatively.

2.
Sensors (Basel) ; 24(17)2024 Sep 08.
Article in English | MEDLINE | ID: mdl-39275748

ABSTRACT

The Internet of Things (IoT) is a significant technological advancement that allows for seamless device integration and data flow. The development of the IoT has led to the emergence of several solutions in various sectors. However, rapid popularization also has its challenges, and one of the most serious challenges is the security of the IoT. Security is a major concern, particularly routing attacks in the core network, which may cause severe damage due to information loss. Routing Protocol for Low-Power and Lossy Networks (RPL), a routing protocol used for IoT devices, is faced with selective forwarding attacks. In this paper, we present a federated learning-based detection technique for detecting selective forwarding attacks, termed FL-DSFA. A lightweight model involving the IoT Routing Attack Dataset (IRAD), which comprises Hello Flood (HF), Decreased Rank (DR), and Version Number (VN), is used in this technique to increase the detection efficiency. The attacks on IoT threaten the security of the IoT system since they mainly focus on essential elements of RPL. The components include control messages, routing topologies, repair procedures, and resources within sensor networks. Binary classification approaches have been used to assess the training efficiency of the proposed model. The training step includes the implementation of machine learning algorithms, including logistic regression (LR), K-nearest neighbors (KNN), support vector machine (SVM), and naive Bayes (NB). The comparative analysis illustrates that this study, with SVM and KNN classifiers, exhibits the highest accuracy during training and achieves the most efficient runtime performance. The proposed system demonstrates exceptional performance, achieving a prediction precision of 97.50%, an accuracy of 95%, a recall rate of 98.33%, and an F1 score of 97.01%. It outperforms the current leading research in this field, with its classification results, scalability, and enhanced privacy.

3.
Talanta ; 282: 126917, 2024 Sep 24.
Article in English | MEDLINE | ID: mdl-39341060

ABSTRACT

The accurate discrimination of bacterial infection is imperative for precise clinical diagnosis and treatment. Here, this work presents a simplified sensor array utilizing "All-in-One" Pdots for efficient discrimination of diverse bacterial samples. The "All-in-One" Pdots sensor (AOPS) were synthesized using three components that exhibit fluorescence resonance energy transfer (FRET) effect, facilitating the efficient integration of multiple discrimination channels to generate specific fluorescence response patterns through a single detection under single-wavelength excitation. Additionally, machine learning techniques were employed to visually represent the fluorescence response patterns of AOPS upon exposure to bacterial metabolites derived from diverse bacterial species. The as-prepared sensor platform demonstrated excellent performance in analyzing eight common bacteria, drug-resistant strains, mixed bacterial samples, bacterial biofilms and real samples, presenting significant potential in the identification of complex samples for bacterial analysis.

4.
Food Chem ; 461: 140938, 2024 Dec 15.
Article in English | MEDLINE | ID: mdl-39197323

ABSTRACT

At present, the combination of fingerprint recognition methods and environmentally friendly and economical analytical instruments is becoming increasingly important in the food industry. Herein, a dithiothreitol (DTT)-functionalized CsPbBr3-based colorimetric sensor array is developed for qualitatively differentiating multiple food oils. In this sensor array composition, two types of iodides (octadecylammonium iodide (ODAI) and ZnI2) are used as recognition elements, and CsPbBr3 is used as a signal probe for the sensor array. Different food oils oxidize iodides differently, resulting in different amounts of remaining iodides. Halogen ion exchange occurs between the remaining iodides and CsPbBr3, leading to different colors observed under ultraviolet light, enabling a unique fingerprint for each food oil. A total of five food oils exhibit their unique colorimetric array's response patterns and were successfully differentiated by linear discriminant analysis (LDA), realizing 100% classification accuracy.


Subject(s)
Calcium Compounds , Colorimetry , Dithiothreitol , Oxides , Titanium , Titanium/chemistry , Colorimetry/instrumentation , Oxides/chemistry , Calcium Compounds/chemistry , Dithiothreitol/chemistry , Plant Oils/chemistry , Discriminant Analysis
5.
Sensors (Basel) ; 24(15)2024 Aug 01.
Article in English | MEDLINE | ID: mdl-39124036

ABSTRACT

The accuracy of classifying motor imagery (MI) activities is a significant challenge when using brain-computer interfaces (BCIs). BCIs allow people with motor impairments to control external devices directly with their brains using electroencephalogram (EEG) patterns that translate brain activity into control signals. Many researchers have been working to develop MI-based BCI recognition systems using various time-frequency feature extraction and classification approaches. However, the existing systems still face challenges in achieving satisfactory performance due to large amount of non-discriminative and ineffective features. To get around these problems, we suggested a multiband decomposition-based feature extraction and classification method that works well, along with a strong feature selection method for MI tasks. Our method starts by splitting the preprocessed EEG signal into four sub-bands. In each sub-band, we then used a common spatial pattern (CSP) technique to pull out narrowband-oriented useful features, which gives us a high-dimensional feature vector. Subsequently, we utilized an effective feature selection method, Relief-F, which reduces the dimensionality of the final features. Finally, incorporating advanced classification techniques, we classified the final reduced feature vector. To evaluate the proposed model, we used the three different EEG-based MI benchmark datasets, and our proposed model achieved better performance accuracy than existing systems. Our model's strong points include its ability to effectively reduce feature dimensionality and improve classification accuracy through advanced feature extraction and selection methods.


Subject(s)
Brain-Computer Interfaces , Electroencephalography , Electroencephalography/methods , Humans , Algorithms , Signal Processing, Computer-Assisted , Imagination/physiology , Brain/physiology
6.
Sensors (Basel) ; 24(13)2024 Jun 25.
Article in English | MEDLINE | ID: mdl-39000902

ABSTRACT

The potential for rotor component shedding in rotating machinery poses significant risks, necessitating the development of an early and precise fault diagnosis technique to prevent catastrophic failures and reduce maintenance costs. This study introduces a data-driven approach to detect rotor component shedding at its inception, thereby enhancing operational safety and minimizing downtime. Utilizing frequency analysis, this research identifies harmonic amplitudes within rotor vibration data as key indicators of impending faults. The methodology employs principal component analysis (PCA) to orthogonalize and reduce the dimensionality of vibration data from rotor sensors, followed by k-fold cross-validation to select a subset of significant features, ensuring the detection algorithm's robustness and generalizability. These features are then integrated into a linear discriminant analysis (LDA) model, which serves as the diagnostic engine to predict the probability of rotor component shedding. The efficacy of the approach is demonstrated through its application to 16 industrial compressors and turbines, proving its value in providing timely fault warnings and enhancing operational reliability.

7.
Heliyon ; 10(12): e32400, 2024 Jun 30.
Article in English | MEDLINE | ID: mdl-38975160

ABSTRACT

Pests are a significant challenge in paddy cultivation, resulting in a global loss of approximately 20 % of rice yield. Early detection of paddy insects can help to save these potential losses. Several ways have been suggested for identifying and categorizing insects in paddy fields, employing a range of advanced, noninvasive, and portable technologies. However, none of these systems have successfully incorporated feature optimization techniques with Deep Learning and Machine Learning. Hence, the current research provided a framework utilizing these techniques to detect and categorize images of paddy insects promptly. Initially, the suggested research will gather the image dataset and categorize it into two groups: one without paddy insects and the other with paddy insects. Furthermore, various pre-processing techniques, such as augmentation and image filtering, will be applied to enhance the quality of the dataset and eliminate any unwanted noise. To determine and analyze the deep characteristics of an image, the suggested architecture will incorporate 5 pre-trained Convolutional Neural Network models. Following that, feature selection techniques, including Principal Component Analysis (PCA), Recursive Feature Elimination (RFE), Linear Discriminant Analysis (LDA), and an optimization algorithm called Lion Optimization, were utilized in order to further reduce the redundant number of features that were collected for the study. Subsequently, the process of identifying the paddy insects will be carried out by employing 7 ML algorithms. Finally, a set of experimental data analysis has been conducted to achieve the objectives, and the proposed approach demonstrates that the extracted feature vectors of ResNet50 with Logistic Regression and PCA have achieved the highest accuracy, precisely 99.28 %. However, the present idea will significantly impact how paddy insects are diagnosed in the field.

8.
Int J Legal Med ; 2024 Jul 13.
Article in English | MEDLINE | ID: mdl-38997516

ABSTRACT

Despite the improvements in forensic DNA quantification methods that allow for the early detection of low template/challenged DNA samples, complicating stochastic effects are not revealed until the final stage of the DNA analysis workflow. An assay that would provide genotyping information at the earlier stage of quantification would allow examiners to make critical adjustments prior to STR amplification allowing for potentially exclusionary information to be immediately reported. Specifically, qPCR instruments often have dissociation curve and/or high-resolution melt curve (HRM) capabilities; this, coupled with statistical prediction analysis, could provide additional information regarding STR genotypes present. Thus, this study aimed to evaluate Qiagen's principal component analysis (PCA)-based ScreenClust® HRM® software and a linear discriminant analysis (LDA)-based technique for their abilities to accurately predict genotypes and similar groups of genotypes from HRM data. Melt curves from single source samples were generated from STR D5S818 and D18S51 amplicons using a Rotor-Gene® Q qPCR instrument and EvaGreen® intercalating dye. When used to predict D5S818 genotypes for unknown samples, LDA analysis outperformed the PCA-based method whether predictions were for individual genotypes (58.92% accuracy) or for geno-groups (81.00% accuracy). However, when a locus with increased heterogeneity was tested (D18S51), PCA-based prediction accuracy rates improved to rates similar to those obtained using LDA (45.10% and 63.46%, respectively). This study provides foundational data documenting the performance of prediction modeling for STR genotyping based on qPCR-HRM data. In order to expand the forensic applicability of this HRM assay, the method could be tested with a more commonly utilized qPCR platform.

9.
Front Chem ; 12: 1412288, 2024.
Article in English | MEDLINE | ID: mdl-39050373

ABSTRACT

Candida auris and Candida haemulonii are two emerging opportunistic pathogens that have caused an increase in clinical cases in the recent years worldwide. The differentiation of some Candida species is highly laborious, difficult, costly, and time-consuming depending on the similarity between the species. Thus, this study aimed to develop a new, faster, and less expensive methodology for differentiating between C. auris and C. haemulonii based on near-infrared (NIR) spectroscopy and multivariate analysis. C. auris CBS10913 and C. haemulonii CH02 were separated in 15 plates per species, and three isolated colonies of each plate were selected for Fourier transform near-infrared (FT-NIR) analysis, totaling 90 spectra. Subsequently, principal component analysis (PCA) and variable selection algorithms, including the successive projections algorithm (SPA) and genetic algorithm (GA) coupled with linear discriminant analysis (LDA), were employed to discern distinctive patterns among the samples. The use of PCA, SPA, and GA algorithms associated with LDA achieved 100% sensitivity and specificity for the discriminations. The SPA-LDA and GA-LDA algorithms were essential in selecting the variables (infrared wavelengths) of most importance for the models, which could be attributed to binding of cell wall structures such as polysaccharides, peptides, proteins, or molecules resulting from yeasts' metabolism. These results show the high potential of combined FT-NIR and multivariate analysis techniques for the classification of Candida-like fungi, which can contribute to faster and more effective diagnosis and treatment of patients affected by these microorganisms.

10.
Sci Rep ; 14(1): 15579, 2024 07 06.
Article in English | MEDLINE | ID: mdl-38971911

ABSTRACT

This work proposes a functional data analysis approach for morphometrics in classifying three shrew species (S. murinus, C. monticola, and C. malayana) from Peninsular Malaysia. Functional data geometric morphometrics (FDGM) for 2D landmark data is introduced and its performance is compared with classical geometric morphometrics (GM). The FDGM approach converts 2D landmark data into continuous curves, which are then represented as linear combinations of basis functions. The landmark data was obtained from 89 crania of shrew specimens based on three craniodental views (dorsal, jaw, and lateral). Principal component analysis and linear discriminant analysis were applied to both GM and FDGM methods to classify the three shrew species. This study also compared four machine learning approaches (naïve Bayes, support vector machine, random forest, and generalised linear model) using predicted PC scores obtained from both methods (a combination of all three craniodental views and individual views). The analyses favoured FDGM and the dorsal view was the best view for distinguishing the three species.


Subject(s)
Machine Learning , Principal Component Analysis , Shrews , Animals , Shrews/anatomy & histology , Skull/anatomy & histology , Skull/diagnostic imaging , Support Vector Machine , Discriminant Analysis , Malaysia
11.
J Food Prot ; 87(9): 100335, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39074611

ABSTRACT

The potential of Raman hyperspectral imaging with a 785 nm excitation line laser was examined for the detection of aflatoxin contamination in corn kernels. Nine-hundred kernels were artificially inoculated in the laboratory, with 300 kernels each inoculated with AF13 (aflatoxigenic) fungus, AF36 (nonaflatoxigenic) fungus, and sterile distilled water (control). One-hundred kernels from each treatment were subsequently incubated for 3, 5, and 8 days. The mean spectra of single kernels were extracted from the endosperm side and the embryo area of the germ side, and local Raman peaks were identified based upon the calculated reference spectra of aflatoxin-negative and -positive categories separately. The principal component analysis-linear discriminant analysis models were established using different types of variable inputs including original full spectra, preprocessed full spectra, and identified local peaks over kernel endosperm-side, germ-side, and both sides. The results of the established discriminant models showed that the germ-side spectra performed better than the endosperm-side spectra. Based upon the 20 ppb-threshold, the best mean prediction accuracy of 82.6% was achieved for the aflatoxin-negative category using the original spectra in the combined form of both kernel sides, and the best mean prediction accuracy of 86.7% was obtained for the -positive category using the preprocessed germ-side spectra. Based upon the 100 ppb-threshold, the best mean prediction accuracies of 85.0% and 89.6% were achieved for the aflatoxin-negative and -positive categories separately, using the same type of variable inputs for the 20 ppb-threshold. In terms of overall prediction accuracy, the models established upon the original spectra in the combined form of both kernel sides achieved the best predictive performance, regardless of the threshold. The mean overall prediction accuracies of 81.8% and 84.5% were achieved with the 20 ppb- and 100 ppb-thresholds, respectively.


Subject(s)
Aflatoxins , Food Contamination , Hyperspectral Imaging , Spectrum Analysis, Raman , Zea mays , Zea mays/chemistry , Zea mays/microbiology , Food Contamination/analysis , Aflatoxins/analysis
12.
Sensors (Basel) ; 24(11)2024 Jun 02.
Article in English | MEDLINE | ID: mdl-38894376

ABSTRACT

The potential of a voltametric E-tongue coupled with a custom data pre-processing stage to improve the performance of machine learning techniques for rapid discrimination of tomato purées between cultivars of different economic value has been investigated. To this aim, a sensor array with screen-printed carbon electrodes modified with gold nanoparticles (GNP), copper nanoparticles (CNP) and bulk gold subsequently modified with poly(3,4-ethylenedioxythiophene) (PEDOT), was developed to acquire data to be transformed by a custom pre-processing pipeline and then processed by a set of commonly used classifiers. The GNP and CNP-modified electrodes, selected based on their sensitivity to soluble monosaccharides, demonstrated good ability in discriminating samples of different cultivars. Among the different data analysis methods tested, Linear Discriminant Analysis (LDA) proved to be particularly suitable, obtaining an average F1 score of 99.26%. The pre-processing stage was beneficial in reducing the number of input features, decreasing the computational cost, i.e., the number of computing operations to be performed, of the entire method and aiding future cost-efficient hardware implementation. These findings proved that coupling the multi-sensing platform featuring properly modified sensors with the custom pre-processing method developed and LDA provided an optimal tradeoff between analytical problem solving and reliable chemical information, as well as accuracy and computational complexity. These results can be preliminary to the design of hardware solutions that could be embedded into low-cost portable devices.


Subject(s)
Gold , Machine Learning , Solanum lycopersicum , Solanum lycopersicum/classification , Solanum lycopersicum/chemistry , Gold/chemistry , Discriminant Analysis , Electronic Nose , Metal Nanoparticles/chemistry , Electrodes , Polymers/chemistry , Copper/chemistry , Bridged Bicyclo Compounds, Heterocyclic/chemistry
13.
Plant Cell Rep ; 43(7): 164, 2024 Jun 09.
Article in English | MEDLINE | ID: mdl-38852113

ABSTRACT

KEY MESSAGE: Hyperspectral features enable accurate classification of soybean seeds using linear discriminant analysis and GWAS for novel seed trait genes. Evaluating crop seed traits such as size, shape, and color is crucial for assessing seed quality and improving agricultural productivity. The introduction of the SUnSet toolbox, which employs hyperspectral sensor-derived image analysis, addresses this necessity. In a validation test involving 420 seed accessions from the Korean Soybean Core Collections, the pixel purity index algorithm identified seed- specific hyperspectral endmembers to facilitate segmentation. Various metrics extracted from ventral and lateral side images facilitated the categorization of seeds into three size groups and four shape groups. Additionally, quantitative RGB triplets representing seven seed coat colors, averaged reflectance spectra, and pigment indices were acquired. Machine learning models, trained on a dataset comprising 420 accession seeds and 199 predictors encompassing seed size, shape, and reflectance spectra, achieved accuracy rates of 95.8% for linear discriminant analysis model. Furthermore, a genome-wide association study utilizing hyperspectral features uncovered associations between seed traits and genes governing seed pigmentation and shapes. This comprehensive approach underscores the effectiveness of SUnSet in advancing precision agriculture through meticulous seed trait analysis.


Subject(s)
Glycine max , Phenotype , Seeds , Glycine max/genetics , Seeds/genetics , Seeds/anatomy & histology , Genome-Wide Association Study/methods , Hyperspectral Imaging/methods , Pigmentation/genetics , Image Processing, Computer-Assisted/methods , Algorithms , Machine Learning
14.
Comput Biol Med ; 178: 108728, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38878401

ABSTRACT

BACKGROUND AND OBJECTIVE: Multiple sclerosis (MS) is a neurodegenerative autoimmune disease affecting the central nervous system, leading to various neurological symptoms. Early detection is paramount to prevent enduring damage during MS episodes. Although magnetic resonance imaging (MRI) is a common diagnostic tool, this study aims to explore the feasibility of using electroencephalography (EEG) signals for MS detection, considering their accessibility and ease of application compared to MRI. METHODS: The study involved the analysis of EEG signals during rest from 17 MS patients and 27 healthy volunteers to investigate MS-healthy patterns. Power spectral density features (PSD) were extracted from the 32-channel EEG signals. The study employed Linear Discriminant Analysis (LDA), Support Vector Machine (SVM), Classification and Regression Trees (CART), and k-Nearest Neighbor (kNN) classifiers to identify channels with the highest accuracy. Notably, the study achieved 100% accuracy in MS detection using the "Fp1" and "Pz" channels with the LDA classifier. A statistical analysis, utilizing the independent sample t-test, was conducted to explore whether PSD features of these channels differed significantly between healthy individuals and those with MS. RESULTS: The results of the study demonstrate that effective detection of MS can be achieved using PSD features from only two channels of the EEG signal. Specifically, the "Fp1" and "Pz" channels exhibited 100% accuracy in MS detection with the LDA classifier. The statistical analysis further explored and confirmed the significant differences in PSD features between healthy individuals and MS patients. CONCLUSION: The study concludes that the proposed method, utilizing PSD features from specific EEG channels, offers a straightforward and efficient diagnostic approach for the effective detection of MS. The findings suggest the potential utility of EEG signals as a non-invasive and accessible alternative for MS detection, highlighting the importance of further research in this direction.


Subject(s)
Electroencephalography , Multiple Sclerosis, Relapsing-Remitting , Signal Processing, Computer-Assisted , Humans , Electroencephalography/methods , Female , Male , Adult , Multiple Sclerosis, Relapsing-Remitting/physiopathology , Multiple Sclerosis, Relapsing-Remitting/diagnostic imaging , Support Vector Machine , Middle Aged
15.
Mikrochim Acta ; 191(7): 365, 2024 06 04.
Article in English | MEDLINE | ID: mdl-38831060

ABSTRACT

Copper-cobalt bimetallic nitrogen-doped carbon-based nanoenzymatic materials (CuCo@NC) were synthesized using a one-step pyrolysis process. A three-channel colorimetric sensor array was constructed for the detection of seven antioxidants, including cysteine (Cys), uric acid (UA), tea polyphenols (TP), lysine (Lys), ascorbic acid (AA), glutathione (GSH), and dopamine (DA). CuCo@NC with peroxidase activity was used to catalyze the oxidation of TMB by H2O2 at three different ratios of metal sites. The ability of various antioxidants to reduce the oxidation products of TMB (ox TMB) varied, leading to distinct absorbance changes. Linear discriminant analysis (LDA) results showed that the sensor array was capable of detecting seven antioxidants in buffer and serum samples. It could successfully discriminate antioxidants with a minimum concentration of 10 nM. Thus, multifunctional sensor arrays based on CuCo@NC bimetallic nanoenzymes not only offer a promising strategy for identifying various antioxidants but also expand their applications in medical diagnostics and environmental analysis of food.


Subject(s)
Antioxidants , Carbon , Colorimetry , Copper , Nitrogen , Nitrogen/chemistry , Colorimetry/methods , Carbon/chemistry , Antioxidants/chemistry , Antioxidants/analysis , Copper/chemistry , Cobalt/chemistry , Hydrogen Peroxide/chemistry , Humans , Catalysis , Limit of Detection , Glutathione/chemistry , Glutathione/blood , Dopamine/blood , Dopamine/analysis , Dopamine/chemistry , Benzidines/chemistry , Polyphenols/chemistry , Polyphenols/analysis , Ascorbic Acid/chemistry , Ascorbic Acid/blood , Ascorbic Acid/analysis , Oxidation-Reduction , Uric Acid/blood , Uric Acid/chemistry , Uric Acid/analysis , Cysteine/chemistry , Cysteine/blood
16.
J Biophotonics ; 17(7): e202300566, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38847123

ABSTRACT

Identification and classification of pathogenic bacterial strains is of current interest for the early treatment of diseases. In this work, protein fluorescence from eight different pathogenic bacterial strains were characterized using steady state and time resolved fluorescence spectroscopy. The spectral deconvolution method was also employed to decompose the emission contribution from different intrinsic fluorophores and extracted various key parameters, such as intensity, emission maxima, emission line width of the fluorophores, and optical redox ratio. The change in average lifetime values across different bacterial strains exhibits good statistical significance (p ≤ 0.01). The variations in the photophysical characteristics of bacterial strains are due to the different conformational states of the proteins. The stepwise multiple linear discriminate analysis of fluorescence emission spectra at 280 nm excitation across eight different bacterial strains classifies the original groups and cross validated group with 100% and 99.5% accuracy, respectively.


Subject(s)
Bacteria , Spectrometry, Fluorescence , Bacteria/classification , Bacteria/isolation & purification , Bacteria/metabolism , Fluorescence
17.
Beilstein J Nanotechnol ; 15: 535-555, 2024.
Article in English | MEDLINE | ID: mdl-38774585

ABSTRACT

Neurodegenerative diseases are characterized by slowly progressing neuronal cell death. Conventional drug treatment strategies often fail because of poor solubility, low bioavailability, and the inability of the drugs to effectively cross the blood-brain barrier. Therefore, the development of new neurodegenerative disease drugs (NDDs) requires immediate attention. Nanoparticle (NP) systems are of increasing interest for transporting NDDs to the central nervous system. However, discovering effective nanoparticle neuronal disease drug delivery systems (N2D3Ss) is challenging because of the vast number of combinations of NP and NDD compounds, as well as the various assays involved. Artificial intelligence/machine learning (AI/ML) algorithms have the potential to accelerate this process by predicting the most promising NDD and NP candidates for assaying. Nevertheless, the relatively limited amount of reported data on N2D3S activity compared to assayed NDDs makes AI/ML analysis challenging. In this work, the IFPTML technique, which combines information fusion (IF), perturbation theory (PT), and machine learning (ML), was employed to address this challenge. Initially, we conducted the fusion into a unified dataset comprising 4403 NDD assays from ChEMBL and 260 NP cytotoxicity assays from journal articles. Through a resampling process, three new working datasets were generated, each containing 500,000 cases. We utilized linear discriminant analysis (LDA) along with artificial neural network (ANN) algorithms, such as multilayer perceptron (MLP) and deep learning networks (DLN), to construct linear and non-linear IFPTML models. The IFPTML-LDA models exhibited sensitivity (Sn) and specificity (Sp) values in the range of 70% to 73% (>375,000 training cases) and 70% to 80% (>125,000 validation cases), respectively. In contrast, the IFPTML-MLP and IFPTML-DLN achieved Sn and Sp values in the range of 85% to 86% for both training and validation series. Additionally, IFPTML-ANN models showed an area under the receiver operating curve (AUROC) of approximately 0.93 to 0.95. These results indicate that the IFPTML models could serve as valuable tools in the design of drug delivery systems for neurosciences.

18.
Curr Res Food Sci ; 8: 100766, 2024.
Article in English | MEDLINE | ID: mdl-38770517

ABSTRACT

Peanut kernels, known for their high nutritional value and palatability, are classified as nut food. In this study, peanut kernel samples from six distinct cities in Shandong Province, China, were examined to categorize and trace their origins. Near-infrared (NIR) spectra of samples were captured using a portable NIR-M-R2 spectrometer. After the application of Savitzky-Golay (SG) filtering, the classification was attempted using principal component analysis (PCA) plus linear discrimination analysis (LDA). Additionally, maximum uncertainty linear discriminant analysis (MLDA) was applied for comparison. A specific number of eigenvectors could respectively maximize the classification accuracies, 81.48% for PCA + LDA and 76.54% for MLDA. In order to further improve the classification accuracies, Adaboost-MLDA was proposed to develop a stronger classifier. This method, after 18 iterations, achieved remarkable effects, achieving a high accuracy of 95.06%. In a similar vein, the enhancement with preprocessing techniques multiplicative scatter correction (MSC) + SG and standard normal variate (SNV) + SG raised accuracies to 98.77% and 97.53%, respectively. The results of classifying first-order and second-order derivative spectra using Adaboost-MLDA were also described, achieving accuracies near 100%. The experiment demonstrates that integrating Adaboost with NIR spectroscopy offers a highly accurate method for peanut kernel classification, promising for practical applications in food quality control.

19.
Front Plant Sci ; 15: 1376915, 2024.
Article in English | MEDLINE | ID: mdl-38689841

ABSTRACT

Corn seeds are an essential element in agricultural production, and accurate identification of their varieties and quality is crucial for planting management, variety improvement, and agricultural product quality control. However, more than traditional manual classification methods are needed to meet the needs of intelligent agriculture. With the rapid development of deep learning methods in the computer field, we propose an efficient residual network named ERNet to identify hyperspectral corn seeds. First, we use linear discriminant analysis to perform dimensionality reduction processing on hyperspectral corn seed images so that the images can be smoothly input into the network. Second, we use effective residual blocks to extract fine-grained features from images. Lastly, we detect and categorize the hyperspectral corn seed images using the classifier softmax. ERNet performs exceptionally well compared to other deep learning techniques and conventional methods. With 98.36% accuracy rate, the result is a valuable reference for classification studies, including hyperspectral corn seed pictures.

20.
Biomark Insights ; 19: 11772719231222111, 2024.
Article in English | MEDLINE | ID: mdl-38707193

ABSTRACT

Background: Type 2 diabetes mellitus (T2DM) are 90% of diabetes cases, and its prevalence and incidence, including comorbidities, are rising worldwide. Clinically, diabetes and associated comorbidities are identified by biochemical and physical characteristics including glycemia, glycated hemoglobin (HbA1c), and tests for cardiovascular, eye and kidney disease. Objectives: Diabetes may have a common etiology based on inflammation and oxidative stress that may provide additional information about disease progression and treatment options. Thus, identifying high-risk individuals can delay or prevent diabetes and its complications. Design: In patients with or without hypertension and cardiovascular disease, as part of progression from no diabetes to T2DM, this research studied the changes in biomarkers between control and prediabetes, prediabetes to T2DM, and control to T2DM, and classified patients based on first-attendance data. Control patients and patients with hypertension, cardiovascular, and with both hypertension and cardiovascular diseases are 156, 148, 61, and 216, respectively. Methods: Linear discriminant analysis is used for classification method and feature importance, This study examined the relationship between Humanin and mitochondrial protein (MOTSc), mitochondrial peptides associated with oxidative stress, diabetes progression, and associated complications. Results: MOTSc, reduced glutathione and glutathione disulfide ratio (GSH/GSSG), interleukin-1ß (IL-1ß), and 8-isoprostane were significant (P < .05) for the transition from prediabetes to t2dm, highlighting importance of mitochondrial involvement. complement component 5a (c5a) is a biomarker associated with disease progression and comorbidities, gsh gssg, monocyte chemoattractant protein-1 (mcp-1), 8-isoprostane being most important biomarkers. Conclusions: Comorbidities affect the hypothesized biomarkers as diabetes progresses. Mitochondrial oxidative stress indicators, coagulation, and inflammatory markers help assess diabetes disease development and provide appropriate medications. Future studies will examine longitudinal biomarker evolution.

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