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1.
J Environ Sci (China) ; 147: 268-281, 2025 Jan.
Article in English | MEDLINE | ID: mdl-39003046

ABSTRACT

The study of microbial hydrocarbons removal is of great importance for the development of future bioremediation strategies. In this study, we evaluated the removal of a gaseous mixture containing toluene, m-xylene, ethylbenzene, cyclohexane, butane, pentane, hexane and heptane in aerated stirred bioreactors inoculated with Rhodococcus erythropolis and operated under non-sterile conditions. For the real-time measurement of hydrocarbons, a novel systematic approach was implemented using Selected-Ion Flow Tube Mass Spectrometry (SIFT-MS). The effect of the carbon source (∼9.5 ppmv) on (i) the bioreactors' performance (BR1: dosed with only cyclohexane as a single hydrocarbon versus BR2: dosed with a mixture of the 8 hydrocarbons) and (ii) the evolution of microbial communities over time were investigated. The results showed that cyclohexane reached a maximum removal efficiency (RE) of 53% ± 4% in BR1. In BR2, almost complete removal of toluene, m-xylene and ethylbenzene, being the most water-soluble and easy-to-degrade carbon sources, was observed. REs below 32% were obtained for the remaining compounds. By exposing the microbial consortium to only the five most recalcitrant hydrocarbons, REs between 45% ± 5% and 98% ± 1% were reached. In addition, we observed that airborne microorganisms populated the bioreactors and that the type of carbon source influenced the microbial communities developed. The abundance of species belonging to the genus Rhodococcus was below 10% in all bioreactors at the end of the experiments. This work provides fundamental insights to understand the complex behavior of gaseous hydrocarbon mixtures in bioreactors, along with a systematic approach for the development of SIFT-MS methods.


Subject(s)
Biodegradation, Environmental , Bioreactors , Hydrocarbons , Rhodococcus , Rhodococcus/metabolism , Bioreactors/microbiology , Hydrocarbons/metabolism , Carbon/metabolism , Air Pollutants/metabolism , Air Pollutants/analysis , Mass Spectrometry , Toluene/metabolism , Xylenes/metabolism , Butanes/metabolism , Benzene Derivatives , Pentanes
2.
Clin Chim Acta ; 564: 119939, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39197698

ABSTRACT

BACKGROUND AND AIMS: Current laboratory methods for opioid detection involve an initial screening with immunoassays which offers efficient but non-specific results and a subsequent liquid chromatography-tandem mass spectrometry (LC-MS/MS) confirmation which offers accurate results but requires extensive sample preparation and turnaround time. Direct Analysis in Real Time (DART) tandem mass spectrometry is evaluated as an alternative approach for accurate opioid detection with efficient sample preparation and turnaround time. MATERIALS AND METHODS: DART-MS/MS was optimized by testing the method with varying temperatures, operation modes, extraction methods, hydrolysis times, and vortex times. The method was evaluated for 12 opioids by testing the analytical measurement range, percent carryover, precision studies, stability, and method-to-method comparison with LC-MS/MS. RESULTS: DART-MS/MS shows high sensitivity and specificity for the detection of 6-acetylmorphine, codeine, hydromorphone, oxymorphone, hydrocodone, naloxone, buprenorphine, norfentanyl, and fentanyl in urine samples. However, its performance was suboptimal for norbuprenorphine, morphine and oxycodone. CONCLUSION: In this proof-of-concept study, DART-MS/MS is evaluated for its rapid quantitative definitive testing of opioids drugs in urine. Further research is needed to expand its application to other areas of drug testing.


Subject(s)
Analgesics, Opioid , Tandem Mass Spectrometry , Humans , Tandem Mass Spectrometry/methods , Analgesics, Opioid/urine , Chromatography, Liquid/methods , Time Factors
3.
Methods Mol Biol ; 2855: 23-39, 2025.
Article in English | MEDLINE | ID: mdl-39354299

ABSTRACT

Metabolomics can be used for a multitude of purposes, including monitoring of treatment effects and for increasing the knowledge of the pathophysiology of a wide range of diseases. Global (commonly referred to as "untargeted") metabolomics is hypothesis-generating and provides the opportunity to discover new biomarkers. Being versatile and having a high degree of selectivity and sensitivity, liquid chromatography-mass spectrometry (LC-MS) is the most common technique applied for metabolomics. We here present our global metabolomics LC-electrospray ionization-MS/MS method. The sample preparation procedures for plasma, serum, dried blood spots, urine, and cerebrospinal fluid are simple and nonspecific to reduce the risk of analyte loss. The method is based on reversed-phase chromatography using a diphenyl column. The high-resolution Q Exactive Orbitrap MS with data-dependent acquisition provides MS/MS spectra of a wide range of analytes. Our method covers a large part of the metabolome regarding hydrophobicity and compound class.


Subject(s)
Metabolomics , Tandem Mass Spectrometry , Metabolomics/methods , Humans , Chromatography, Liquid/methods , Tandem Mass Spectrometry/methods , Biomarkers/blood , Biomarkers/urine , Spectrometry, Mass, Electrospray Ionization/methods , Metabolome , Dried Blood Spot Testing/methods , Chromatography, Reverse-Phase/methods , Liquid Chromatography-Mass Spectrometry
4.
Methods Mol Biol ; 2855: 67-84, 2025.
Article in English | MEDLINE | ID: mdl-39354301

ABSTRACT

Untargeted metabolomics is a powerful profiling tool for the discovery of possible biomarkers of disease onset and progression. Analytical pipelines applying liquid chromatography (LC) and mass spectrometry (MS)-based methods are widely used to survey a broad range of metabolites within various metabolic pathways, including organic acids, amino acids, nucleosides, and lipids. Accurate and complete identification of putative metabolites is an ongoing challenge in untargeted metabolomics studies. Highly sensitive instrumentation can result in the detection of adduct and fragment ions that form reproducibly and contain identifiable ions that are difficult to distinguish from metabolic pathway intermediates, which may result in false-positive identification. At concentrations as low as 10 µM, free fatty acids have been found to form homo- and heterodimers in untargeted metabolomics pipelines that resemble the lipid class fatty acid esters of hydroxy fatty acids (FAHFAs), resulting in misidentification. This chapter details a protocol for LC-MS-based untargeted metabolomics using hydrophilic interaction chromatography (HILIC) that specifically aids in distinguishing artifactual fatty acid dimers from endogenous FAHFAs.


Subject(s)
Esters , Fatty Acids , Mass Spectrometry , Metabolomics , Fatty Acids/analysis , Fatty Acids/metabolism , Fatty Acids/chemistry , Chromatography, Liquid/methods , Esters/analysis , Esters/chemistry , Esters/metabolism , Metabolomics/methods , Mass Spectrometry/methods , Artifacts , Dimerization , Hydroxy Acids/analysis , Hydroxy Acids/metabolism , Hydroxy Acids/chemistry , Hydrophobic and Hydrophilic Interactions , Humans , Tandem Mass Spectrometry/methods , Liquid Chromatography-Mass Spectrometry
5.
Methods Mol Biol ; 2855: 133-145, 2025.
Article in English | MEDLINE | ID: mdl-39354305

ABSTRACT

Endocannabinoids (ECBs) are lipid-derived endogenous molecules with important physiological roles such as regulation of energy balance, immunity, or neural development. Quantitation of ECBs helps better understand their physiological role and modulation of biological processes. This chapter presents the simultaneous quantification of 14 ECBs and related molecules in the brain, liver, and muscle, as well as white and brown adipose tissue using liquid chromatography-tandem mass spectrometry (LC-MS/MS). The dynamic range of the method has been tuned to cover the endogenous concentrations of these analytes given the fact that they are endogenously present at different orders of magnitude. Specifically, three groups are established: 0.5-5000 ng/mL for 2-oleoyl- and 2-linoleoylglycerol and arachidonic acid, 0.05-500 ng/mL for 2-arachidonoylglycerol, and 0.0005-0.5 ng/mL for anandamide, palmitoyl-, palmitoleoyl-, stearoyl-, oleoyl-, linoleoyl-, alpha-linolenoyl-, dihomo-gamma-linolenoyl-, docosahexaenoyl-, and pentadecanoylethanolamide.


Subject(s)
Endocannabinoids , Tandem Mass Spectrometry , Endocannabinoids/analysis , Endocannabinoids/metabolism , Tandem Mass Spectrometry/methods , Chromatography, Liquid/methods , Animals , Brain/metabolism , Liver/metabolism , Liver/chemistry , Mice , Liquid Chromatography-Mass Spectrometry
6.
Methods Mol Biol ; 2855: 389-423, 2025.
Article in English | MEDLINE | ID: mdl-39354320

ABSTRACT

Capillary electrophoresis coupled to mass spectrometry (CE-MS) has emerged as a powerful analytical technique with significant implications for clinical research and diagnostics. The integration of information from CE and MS strengthens confidence in the identification of compounds present in clinical samples. The ability of CE to separate molecules based on their electrophoretic mobility coupled to MS enables the accurate identification and quantification of analytes, even in complex biological matrices such as human plasma.Here, we present a detailed protocol for an untargeted metabolomics study using CE-MS and its application in a study on human plasma from patients suffering Long COVID syndrome. The protocol ranges from sample preparation to biological interpretation, detailing a workflow enabling the analysis of cationic and anionic compounds, metabolite identification, and data processing.


Subject(s)
COVID-19 , Electrophoresis, Capillary , Mass Spectrometry , Metabolomics , Humans , Electrophoresis, Capillary/methods , Metabolomics/methods , Mass Spectrometry/methods , COVID-19/blood , COVID-19/diagnosis , SARS-CoV-2/metabolism , Plasma/chemistry , Plasma/metabolism
7.
Methods Mol Biol ; 2854: 93-106, 2025.
Article in English | MEDLINE | ID: mdl-39192122

ABSTRACT

As an interferon-stimulating factor protein, STING plays a role in the response and downstream liaison in antiviral natural immunity. Upon viral invasion, the immediate response of STING protein leads to a series of changes in downstream proteins, which ultimately leads to an antiviral immune response in the form of proinflammatory cytokines and type I interferons, thus triggering an innate immune response, an adaptive immune response in vivo, and long-term protection of the host. In the field of antiviral natural immunity, it is particularly important to rigorously and sequentially probe the dynamic changes in the antiviral natural immunity connector protein STING caused by the entire anti-inflammatory and anti-pathway mechanism and the differences in upstream and downstream proteins. Traditionally, proteomics technology has been validated by detecting proteins in a 2D platform, for which it is difficult to sensitively identify changes in the nature and abundance of target proteins. With the development of mass spectrometry (MS) technology, MS-based proteomics has made important contributions to characterizing the dynamic changes in the natural immune proteome induced by viral infections. MS analytical techniques have several advantages, such as high throughput, rapidity, sensitivity, accuracy, and automation. The most common techniques for detecting complex proteomes are liquid chromatography (LC) and mass spectrometry (MS). LC-MS (Liquid Chromatography-Mass Spectrometry), which combines the physical separation capability of LC and the mass analysis capability of MS, is a powerful technique mainly used for analyzing the proteome of cells, tissues, and body fluids. To explore the combination of traditional proteomics techniques such as Western blotting, Co-IP (co-Immunoprecipitation), and the latest LC-MS methods to probe the anti-inflammatory pathway and the differential changes in upstream and downstream proteins induced by the antiviral natural immune junction protein STING.


Subject(s)
Immunity, Innate , Proteomics , Proteomics/methods , Chromatography, Liquid/methods , Humans , Blotting, Western/methods , Mass Spectrometry/methods , Immunoprecipitation/methods , Animals , Membrane Proteins/metabolism , Membrane Proteins/immunology , Liquid Chromatography-Mass Spectrometry
8.
Methods Mol Biol ; 2854: 29-34, 2025.
Article in English | MEDLINE | ID: mdl-39192115

ABSTRACT

Mass spectrometers are widely used to identify protein phosphorylation sites. The process usually involves selective isolation of phosphoproteins and subsequent fragmentation to identify both the peptide sequence and phosphorylation site. Immunoprecipitation could capture and purify the protein of interest, greatly reducing sample complexity before submitting it for mass spectrometry analysis. This chapter describes a method to identify an abnormal phosphorylated site of the adaptor protein by a viral kinase through immunoprecipitation followed by LC-MS/MS.


Subject(s)
Immunoprecipitation , Phosphoproteins , Tandem Mass Spectrometry , Phosphorylation , Tandem Mass Spectrometry/methods , Immunoprecipitation/methods , Chromatography, Liquid/methods , Humans , Phosphoproteins/metabolism , Phosphoproteins/analysis , Mass Spectrometry/methods
9.
J Environ Sci (China) ; 148: 387-398, 2025 Feb.
Article in English | MEDLINE | ID: mdl-39095174

ABSTRACT

Land use and precipitation are two major factors affecting phosphorus (P) pollution of watershed runoff. However, molecular characterization of dissolved organic phosphorus (DOP) in runoff under the joint influences of land use and precipitation remains limited. This study used Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) to study the molecular characteristics of DOP in a typical P-polluted watershed with spatially variable land use and precipitation. The results showed that low precipitation and intense human activity, including phosphate mining and associated industries, resulted in the accumulation of aliphatic DOP compounds in the upper reaches, characterized by low aromaticity and low biological stability. Higher precipitation and widespread agriculture in the middle and lower reaches resulted in highly unsaturated DOP compounds with high biological stability constituting a higher proportion, compared to in the upper reaches. While, under similar precipitation, more aliphatic DOP compounds characterized by lower aromaticity and higher saturation were enriched in the lower reaches due to more influence from urban runoff relative to the middle reaches. Photochemical and/or microbial processes did result in changes in the characteristics of DOP compounds during runoff processes due to the prevalence of low molecular weight and low O/C bioavailable aliphatic DOP molecules in the upper reaches, which were increasingly transformed into refractory compounds from the upper to middle reaches. The results of this study can increase the understanding of the joint impacts of land use and precipitation on DOP compounds in watershed runoff.


Subject(s)
Environmental Monitoring , Phosphorus , Water Pollutants, Chemical , Phosphorus/analysis , Water Pollutants, Chemical/analysis , Rain/chemistry , Agriculture
10.
J Environ Sci (China) ; 148: 614-624, 2025 Feb.
Article in English | MEDLINE | ID: mdl-39095194

ABSTRACT

The overuse of antibiotics and antitumor drugs has resulted in more and more extensive pollution of water bodies with organic drugs, causing detrimental ecological effects, which have attracted attention towards effective and sustainable methods for antibiotics and antitumor drug degradation. Here, the hybrid nanomaterial (g-C3N4@Fe/Pd) was synthesized and used to remove a kind of both an antibiotic and antitumor drug named mitoxantrone (MTX) with 92.0% removal efficiency, and the MTX removal capacity is 450 mg/g. After exposing to the hybrid material the MTX aqueous solution changed color from dark blue to lighter progressively, and LC-UV results of residual solutions show that a new peak at 3.0 min (MTX: 13.2 min) after removal by g-C3N4@Fe/Pd appears, with the simultaneous detection of intermediate products indicating that g-C3N4@Fe/Pd indeed degrades MTX. Detailed mass spectrometric analysis suggests that the nuclear mass ratio decreased from 445.2 (M+1H) to 126.0 (M+1H), 169.1 (M+1H), 239.2 (M+1H), 267.3 (M+1H), 285.2 (M+1H), 371.4 (M+1H) and 415.2 (M+1H), and the maximum proportion (5.63%) substance of all degradation products (126.0 (M+1H)) is 40-100 times less toxic than MTX. A mechanism for the removal and degradation of mitoxantrone was proposed. Besides, actual water experiments confirmed that the maximum removal capacity of MTX by g-C3N4@Fe/Pd is up to 492.4 mg/g (0.02 g/L, 10 ppm).


Subject(s)
Graphite , Metal Nanoparticles , Mitoxantrone , Palladium , Water Pollutants, Chemical , Mitoxantrone/chemistry , Water Pollutants, Chemical/chemistry , Graphite/chemistry , Metal Nanoparticles/chemistry , Palladium/chemistry , Iron/chemistry , Catalysis , Nitrogen Compounds/chemistry , Antineoplastic Agents/chemistry
11.
Food Chem ; 462: 140666, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39208728

ABSTRACT

To improve the adsorption affinity and selectivity of fipronils (FPNs), including fipronil, its metabolites and analogs, a magnetic covalent organic framework (Fe3O4@COF-F) with copious fluorine affinity sites was innovatively designed as an adsorbent of magnetic solid-phase extraction (MSPE). The enhanced surface area, pore size, crystallinity of Fe3O4@COF-F and its exponential adsorption capacities (187.3-231.5 mg g-1) towards fipronils were investigated. Combining MSPE with high-performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS), an analytical method was established for the selective determination of fipronils in milk and milk powder samples. This method achieved high sensitivity (LODs: 0.004-0.075 ng g-1), satisfactory repeatability and accuracy with spiked recoveries ranging from 89.9% to 100.3% (RSDs≤5.1%). Overall, the constructed Fe3O4@COF-F displayed great potential for the selective enrichment of fipronils, which could be ascribed to fluorine­fluorine interaction. This method proposed a feasible and promising strategy for the development of functionalized COF and broadened its application in fluorine containing hazards detection.


Subject(s)
Fluorine , Food Contamination , Metal-Organic Frameworks , Milk , Pyrazoles , Solid Phase Extraction , Tandem Mass Spectrometry , Pyrazoles/chemistry , Food Contamination/analysis , Fluorine/chemistry , Milk/chemistry , Animals , Metal-Organic Frameworks/chemistry , Adsorption , Chromatography, High Pressure Liquid , Insecticides/chemistry , Insecticides/analysis , Limit of Detection
12.
Food Chem ; 462: 140971, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39208734

ABSTRACT

This study presents the contents of α-methylenecyclopropylglycine, a potentially toxic amino acid, in the peel, pulp and seed fractions of two well-known litchi varieties, namely Shahi and China, over a span of three harvest-seasons. For analysing α-methylenecyclopropylglycine, an LC-MS/MS-based method was validated. The method-accuracies fell within 75-110 % (RSD, <15 %) at 0.1 mg/kg (LOQ) and higher levels. A comparative evaluation of the results in peel, pulp and seed at 30 days before harvest (DBH), 15-DBH, and edible-ripe stage revealed that α-methylenecyclopropylglycine content increased as the litchi seeds grew towards maturity, regardless of the cultivar. In arils, at maturity, the concentration of α-methylenecyclopropylglycine ranged from not-detected to 11.7 µg/g dry weight. The Shahi cultivar showed slightly higher α-methylenecyclopropylglycine content in comparison to China litchi. This paper presents the first known analysis of combined seasonal data on different fruit components at various growth stages for the two chosen litchi cultivars grown in India.


Subject(s)
Fruit , Litchi , Seeds , Tandem Mass Spectrometry , Litchi/chemistry , Litchi/growth & development , Litchi/metabolism , Fruit/chemistry , Fruit/growth & development , China , Seeds/chemistry , Seeds/growth & development , Glycine/analogs & derivatives , Glycine/analysis , Chromatography, High Pressure Liquid , Cyclopropanes/analysis
13.
Food Chem ; 462: 141002, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39216371

ABSTRACT

Making health-enhancing tea from Forsythia suspensa leaves has been a tradition of Chinese folk culture for centuries. However, these leaves were not officially recognized as a new food source until 2017 by the Chinese government. In this study, ethyl acetate fractions from Forsythia suspensa fruit and leaves exhibited excellent antioxidant activity in vitro antioxidant assays and in vivo D-galactose-induced aging mice model. The antioxidant activity of the leaves was higher than that of fruit both in vitro and in vivo. The chemical constituents present in these ethyl acetate fractions were comprehensively analyzed using UHPLC-Q-Exactive-Orbitrap/MS. A total of 20 compounds were identified, among which forsythoside E, (+)-epipinoresinol, dihydromyricetin, chlorogenic acid, and ursolic acid were exclusively detected in the ethyl acetate fraction of Forsythia suspensa leaves, but absent in the ethyl acetate fraction derived from its fruit. This study provides theoretical support for the utilization of Forsythia suspensa fruit and leaves.


Subject(s)
Aging , Antioxidants , Forsythia , Fruit , Galactose , Plant Extracts , Plant Leaves , Animals , Forsythia/chemistry , Plant Leaves/chemistry , Mice , Fruit/chemistry , Plant Extracts/chemistry , Chromatography, High Pressure Liquid , Antioxidants/chemistry , Antioxidants/pharmacology , Aging/drug effects , Male , Humans , Mass Spectrometry
14.
Food Chem ; 462: 140931, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39217752

ABSTRACT

This research focused on distinguishing distinct matrix assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) spectral signatures of three Enterococcus species. We evaluated and compared the predictive performance of four supervised machine learning algorithms, K-nearest neighbor (KNN), support vector machine (SVM), and random forest (RF), to accurately classify Enterococcus species. This study involved a comprehensive dataset of 410 strains, generating 1640 individual spectra through on-plate and off-plate protein extraction methods. Although the commercial database correctly identified 76.9% of the strains, machine learning classifiers demonstrated superior performance (accuracy 0.991). In the RF model, top informative peaks played a significant role in the classification. Whole-genome sequencing showed that the most informative peaks are biomarkers connected to proteins, which are essential for understanding bacterial classification and evolution. The integration of MALDI-TOF MS and machine learning provides a rapid and accurate method for identifying Enterococcus species, improving healthcare and food safety.


Subject(s)
Enterococcus , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Supervised Machine Learning , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Enterococcus/classification , Enterococcus/chemistry , Enterococcus/isolation & purification , Enterococcus/genetics , Algorithms , Support Vector Machine , Bacterial Typing Techniques/methods , Machine Learning
15.
Food Chem ; 462: 140936, 2025 Jan 01.
Article in English | MEDLINE | ID: mdl-39232273

ABSTRACT

Aromatic amino acid oxidation products (AAAOPs) are newly discovered risk substances of thermal processes. Due to its significant polarity and trace level in food matrices, there are no efficient pre-treatment methods available to enrich AAAOPs. Herein, we proposed a magnetic cationic covalent organic framework (Fe3O4@EB-iCOF) as an adsorbent for dispersive magnetic solid-phase extraction (DMSPE). Benefiting from the unique charged characteristics of Fe3O4@EB-iCOF, AAAOPs can be enriched through electrostatic interaction and π-π interactions. Under the optimal DMSPE conditions, the combined HPLC-MS/MS method demonstrated good linearity (R2 ≥ 0.990) and a low detection limit (0.11-7.5 µg·kg-1) for AAAOPs. In addition, the method was applied to real sample and obtained satisfactory recoveries (86.8 % âˆ¼ 109.9 %). Especially, we applied this method to the detection of AAAOPs in meat samples and conducted a preliminarily study on its formation rules, which provides a reliable basis for assessing potential dietary risks.


Subject(s)
Amino Acids, Aromatic , Oxidation-Reduction , Solid Phase Extraction , Solid Phase Extraction/methods , Amino Acids, Aromatic/chemistry , Amino Acids, Aromatic/analysis , Amino Acids, Aromatic/isolation & purification , Tandem Mass Spectrometry , Metal-Organic Frameworks/chemistry , Hot Temperature , Food Contamination/analysis , Chromatography, High Pressure Liquid , Animals , Adsorption , Meat/analysis , Food, Processed
16.
J Ethnopharmacol ; 336: 118727, 2025 Jan 10.
Article in English | MEDLINE | ID: mdl-39182700

ABSTRACT

ETHNOPHARMACOLOGICAL RELEVANCE: Ophiocordyceps sinensis (O. sinensis) is a genus of Ascomycete fungus that is endemic to the alpine meadows of the Tibetan Plateau and adjoining Himalayas. It has been used traditionally as a tonic to improve respiratory health in ancient China as well as to promote vitality and longevity. Bioactive components found in O. sinensis such as adenosine, cordycepin, 3-deoxyadenosine, L-arginine and polysaccharides have gained increasing interest in recent years due to their antioxidative and other properties, which include anti-asthmatic, antiviral, immunomodulation and improvement of general health. AIM OF THE STUDY: This study's primary aim was to investigate the effect of a cultivated fruiting body of O. sinensis strain (OCS02®) on airways patency and the secondary focus was to investigate its effect on the lifespan of Caenorhabditis elegans. MATERIALS AND METHODS: A cultivated strain, OCS02®, was employed and the metabolic profile of its cold-water extract (CWE) was analysed through liquid chromatography-mass spectrometry (LC-MS). Organ bath approach was used to investigate the pharmacological properties of OCS02® CWE when applied on airway tissues obtained from adult male Sprague-Dawley rats. The airway relaxation mechanisms of OCS02® CWE were explored using pharmacological tools, where the key regulators in airway relaxation and constriction were investigated. For the longevity study, age-synchronised, pos-1 RNAi-treated wild-type type Caenorhabditis elegans at the L4 stage were utilised for a lifespan assay. RESULTS: Various glycopeptides and amino acids, particularly a high concentration of L-arginine, were identified from the LC-MS analysis. In airway tissues, OCS02® CWE induced a significantly greater concentration-dependent relaxation when compared to salbutamol. The relaxation response was significantly attenuated in the presence of NG-Nitro-L-arginine methyl ester (L-NAME), 1H-[1,2,4]oxadiazolo [4,3-a]quinoxalin-1-one (ODQ) and several K+ channel blockers. The longevity effect induced by OCS02® CWE (5 mg/mL and above) was observed in C. elegans by at least 17%. CONCLUSIONS: These findings suggest that the airway relaxation mechanisms of OCS02® CWE involved cGMP-dependent and cGMP-independent nitric oxide signalling pathways. This study provides evidence that the cultivated strain of OCS02® exhibits airway relaxation effects which supports the traditional use of its wild O. sinensis in strengthening respiratory health.


Subject(s)
Fruiting Bodies, Fungal , Muscle, Smooth , Rats, Sprague-Dawley , Animals , Male , Fruiting Bodies, Fungal/chemistry , Muscle, Smooth/drug effects , Muscle Relaxation/drug effects , Rats , Trachea/drug effects , Trachea/metabolism , Longevity/drug effects , Hypocreales
17.
J Ethnopharmacol ; 336: 118739, 2025 Jan 10.
Article in English | MEDLINE | ID: mdl-39197805

ABSTRACT

ETHNOPHARMACOLOGICAL RELEVANCE: Modified Danzhi Xiaoyao San (MDXS) is an effective clinical prescription for depression in China, which was deprived of Danzhi Xiaoyao San in the Ming Dynasty. MDSX has significant implications for the development of new antidepressants, but its pharmacological mechanism has been rarely studied. AIM OF THE STUDY: To reveal the active components and molecular mechanism of MDXS in treating depression through network pharmacology and experimental verification in vivo and in vitro. MATERIALS AND METHODS: UPLC-Q-TOF-MS/MS was used to identify the chemical components in the MDXS freeze-dried powder, drug-containing serum, and cerebrospinal fluid (CSF). Based on the analysis of prototype components in the CSF, the major constituents, potential therapeutic targets and possible pharmacological mechanisms of MDXS in treating depression were investigated using network pharmacological and molecular docking. Then corticosterone (CORT)-induced mice model of depression was established to investigate the antidepressant effects of MDXS. HT22 cells were cultured to verify the neuroprotective effects and core targets of the active components. RESULTS: There were 81 compounds in MDXS freeze-dried powder, 36 prototype components in serum, and 13 prototype components in CSF were identified, respectively. Network pharmacology analysis showed that these 13 prototype components in the CSF shared 190 common targets with depression, which were mainly enriched in MAPK and PI3K/AKT signaling pathways. PPI analysis suggested that AKT1 and MAPK1 (ERK1/2) were the core targets. Molecular docking revealed that azelaic acid (AA), senkyunolide A (SA), atractylenolide III (ATIII), and tokinolide B (TB) had the highest binding energy with AKT1 and MAPK1. Animal experiments verified that MDXS could reverse CORT-induced depression-like behaviors, improve synaptic plasticity, alleviate neuronal injury in hippocampal CA3 regions, and up-regulate the protein expression of p-ERK1/2 and p-AKT. In HT22 cells, azelaic acid, senkyunolide A, and atractylenolide III significantly protected the cell injury caused by CORT, and up-regulated the protein levels of p-ERK1/2 and p-AKT. CONCLUSIONS: These results suggested that MDXS may exert antidepressant effects partially through azelaic acid, senkyunolide A, and atractylenolide III targeting ERK1/2 and AKT.


Subject(s)
Antidepressive Agents , Depression , Drugs, Chinese Herbal , Molecular Docking Simulation , Network Pharmacology , Animals , Antidepressive Agents/pharmacology , Depression/drug therapy , Drugs, Chinese Herbal/pharmacology , Mice , Male , Cell Line , Disease Models, Animal , Mice, Inbred C57BL , Corticosterone/blood , Tandem Mass Spectrometry , Behavior, Animal/drug effects
18.
Methods Mol Biol ; 2852: 85-103, 2025.
Article in English | MEDLINE | ID: mdl-39235738

ABSTRACT

Although MALDI-TOF mass spectrometry (MS) is considered as the gold standard for rapid and cost-effective identification of microorganisms in routine laboratory practices, its capability for antimicrobial resistance (AMR) detection has received limited focus. Nevertheless, recent studies explored the predictive performance of MALDI-TOF MS for detecting AMR in clinical pathogens when machine learning techniques are applied. This chapter describes a routine MALDI-TOF MS workflow for the rapid screening of AMR in foodborne pathogens, with Campylobacter spp. as a study model.


Subject(s)
Campylobacter , Drug Resistance, Bacterial , Machine Learning , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Campylobacter/drug effects , Anti-Bacterial Agents/pharmacology , Humans , Food Microbiology/methods , Microbial Sensitivity Tests/methods , Foodborne Diseases/microbiology , Bacteria/drug effects
19.
Methods Mol Biol ; 2852: 255-272, 2025.
Article in English | MEDLINE | ID: mdl-39235749

ABSTRACT

Metabolomics is the study of low molecular weight biochemical molecules (typically <1500 Da) in a defined biological organism or system. In case of food systems, the term "food metabolomics" is often used. Food metabolomics has been widely explored and applied in various fields including food analysis, food intake, food traceability, and food safety. Food safety applications focusing on the identification of pathogen-specific biomarkers have been promising. This chapter describes a nontargeted metabolite profiling workflow using gas chromatography coupled with mass spectrometry (GC-MS) for characterizing three globally important foodborne pathogens, Escherichia coli O157:H7, Listeria monocytogenes, and Salmonella enterica, from selective enrichment liquid culture media. The workflow involves a detailed description of food spiking experiments followed by procedures for the extraction of polar metabolites from media, the analysis of the extracts using GC-MS, and finally chemometric data analysis using univariate and multivariate statistical tools to identify potential pathogen-specific biomarkers.


Subject(s)
Biomarkers , Food Microbiology , Gas Chromatography-Mass Spectrometry , Listeria monocytogenes , Metabolomics , Metabolomics/methods , Gas Chromatography-Mass Spectrometry/methods , Biomarkers/analysis , Food Microbiology/methods , Listeria monocytogenes/metabolism , Listeria monocytogenes/isolation & purification , Salmonella enterica/metabolism , Escherichia coli O157/metabolism , Escherichia coli O157/isolation & purification , Foodborne Diseases/microbiology , Metabolome
20.
Phytochemistry ; : 114296, 2024 Oct 02.
Article in English | MEDLINE | ID: mdl-39366474

ABSTRACT

Plant-derived natural products remain crucial in drug development. However, the identification of undescribed natural products is becoming increasingly challenging. A comprehensive strategy combining LC-MS with diagnostic ions was proposed for the discovery of undescribed 5-methylcoumarin meroterpenoids. Thirteen undescribed 5-methylcoumarin meroterpenoids, including five pairs of enantiomers (1a/1b and 5a/5b-8a/8b), were isolated from the whole plant of Gerbera piloselloides. Their structures and absolute configurations were unambiguously determined based on their spectroscopic data, calculated and experimental ECD data and X-ray diffraction analysis. Bioassays conducted on scopolamine-induced injury PC12 cells revealed that compounds 5a/5b, 7a/7b and 8a/8b possessed mild protective effects. Additionally, compounds 2 and 8 showed notable IL-6 inhibition in lipopolysaccharide-induced BEAS-2B cells.

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