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1.
Biochem Genet ; 2023 Nov 20.
Article in English | MEDLINE | ID: mdl-37985543

ABSTRACT

Intellectual disability, a genetically and clinically varied disorder and is a significant health problem, particularly in less developed countries due to larger family size and high ratio of consanguineous marriages. In the current genetic study, we investigate and find the novel disease causative factors in the four Pakistani families with severe type of non-syndromic intellectual disability. For genetic analysis whole-exome sequencing (WES) and Sanger sequencing was performed. I-TASSER and Cluspro tools were used for Protein modeling and Protein-protein docking. Sanger sequencing confirms the segregation of novel homozygous variants in all the families i.e., c.245 T > C; p.Leu82Pro in SLC50A1 gene in family 1, missense variant c.1037G > A; p.Arg346His in TARS2 gene in family 2, in family 3 and 4, nonsense mutation c.234G > A; p.Trp78Term and missense mutation c.2200G > A; p.Asp734Asn in TBC1D3 and ANAPC2 gene, respectively. In silico functional studies have found the drastic effect of these mutations on protein structure and its interaction properties. Substituted amino acids were highly conserved and present on highly conserved region throughout the species. The discovery of pathogenic variants in SLC50A1, TARS2, TBC1D1 and ANAPC2 shows that the specific pathways connected with these genes may be important in cognitive impairment. The decisive role of pathogenic variants in these genes cannot be determined with certainty due to lack of functional data. However, exome sequencing and segregation analysis of all filtered variants revealed that the currently reported variants were the only variations from the respective families that segregated with the phenotype in the family.

2.
J Pharm Bioallied Sci ; 15(Suppl 2): S964-S967, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37694045

ABSTRACT

Four new dental replacement base tars were evaluated in vitro to determine their mechanical qualities, authentic properties, and biocompatibility. Materials and Methods: In this experiment, we employed SR Triplet HOT (a fiber-developed heat fix tar), Sunflex (a multipurpose force fix sap), Trevalon-Hello (a high-impact heat fix tar), DPI (a digital pigment imaging system), and a variety of other pigments and inks (normal power fix tar). For these models, the ISO specification 1567 for dental substitute base gums called for testing of flexural strength, hardness, impact strength, water sorption and dissolvability, and cytotoxicity. Results: All the strength and mechanical properties tested had a statistically significant difference when intergroup analysis was performed. Conclusion: The exceptional physical and mechanical capabilities of the Sunflex denture base resin, together with its biocompatibility with oral tissues, make it a good candidate for use as a denture base material in routine clinical practice.

3.
Cell Rep ; 42(9): 113154, 2023 09 26.
Article in English | MEDLINE | ID: mdl-37725513

ABSTRACT

Bacteria use quorum sensing (QS) to coordinate group behavior in response to cell density, and some bacterial viruses (phages) also respond to QS. In Staphylococcus aureus, the agr-encoded QS system relies on accumulation of auto-inducing cyclic peptides (AIPs). Other staphylococci also produce AIPs of which many inhibit S. aureus agr. We show that agr induction reduces expression of tarM, encoding a glycosyltransferase responsible for α-N-acetylglucosamine modification of the major S. aureus phage receptor, the wall teichoic acids. This allows lytic phage Stab20 and related phages to infect and kill S. aureus. However, in mixed communities, producers of inhibitory AIPs like S. haemolyticus, S. caprae, and S. pseudintermedius inhibit S. aureus agr, thereby impeding phage infection. Our results demonstrate that cross-species interactions dramatically impact phage susceptibility. These interactions likely influence microbial ecology and impact the efficacy of phages in medical and biotechnological applications such as phage therapy.


Subject(s)
Bacteriophages , Staphylococcal Infections , Humans , Staphylococcus aureus/metabolism , Bacteriophages/metabolism , Staphylococcus/metabolism , Glycosyltransferases/metabolism , Bacterial Proteins/metabolism , Quorum Sensing
4.
Front Oncol ; 13: 1207867, 2023.
Article in English | MEDLINE | ID: mdl-37637061

ABSTRACT

Background: There has been an increase in the number of women suffering from breast cancer in recent years, and discovering new therapeutic targets and efficacy predictive markers is critical for comprehensive breast cancer treatment. Methods: First, we used bioinformatics methods to analyze TARS1(encoding cytoplasmicthreonyl-tRNA synthetase) expression, prognosis, and clinicopathological characteristics in TCGA database breast cancers, and then we collected breast cancer specimens from our center for validation. TARS1 was then subjected to GSEA (Gene Set Enrichment Analysis) enrichment analysis, GO/KEGG pathway enrichment analysis, and breast cancer immune infiltration characterization. As a last step, we examined TARS1's effects on breast cancer cell behavior with cellular assays. Results: The overexpression of TARS1 has been found in several malignant tumors, including breast cancer, and has been linked to poor prognoses. Breast cancers with large primary tumors and negative hormone receptors are more likely to overexpress TARS1. Overexpression of TARS1 promotes the infiltration of T cells, such as Tregs and Th2s, while inhibiting the infiltration of NK cells and CD8+ T cells, which are anticancer cells in breast cancer. TARS1 was also found to be co-expressed with the majority of immune checkpoint-related genes, and breast cancer with TARS1 overexpression responded better to immunotherapy. By knocking down TARS1, breast cancer cells were prevented from proliferating and invading, as well as exhibiting other malignant biological properties. Conclusion: According to our study, TARS1 may be an oncogene in breast cancer and may be a biomarker of efficacy or a target of immunotherapy in breast cancer.

5.
Int J Mol Sci ; 24(13)2023 Jul 06.
Article in English | MEDLINE | ID: mdl-37446364

ABSTRACT

Raffinose synthase (RS) plays a crucial role in plant growth and development, as well as in responses to biotic stresses and abiotic stresses, yet few studies have been conducted on its role in bread wheat. Therefore, in this study we screened and identified a family of bread wheat raffinose synthase genes based on bread wheat genome information and analyzed their physicochemical properties, phylogenetic evolutionary relationships, conserved structural domains, promoter cis-acting elements, and expression patterns. The BSMV-induced silencing of TaRS15-3B resulted in the bread wheat seedlings being susceptible to drought and salt stress and reduced the expression levels of stress-related and ROS-scavenging genes in bread wheat plants. This further affected the ability of bread wheat to cope with drought and salt stress. In conclusion, this study revealed that the RS gene family in bread wheat plays an important role in plant response to abiotic stresses and that the TaRS15-3B gene can improve the tolerance of transgenic bread wheat to drought and salt stresses, provide directions for the study of other RS gene families in bread wheat, and supply candidate genes for use in molecular breeding of bread wheat for stress resistance.


Subject(s)
Drought Resistance , Salt Tolerance , Salt Tolerance/genetics , Triticum/metabolism , Phylogeny , Bread , Droughts , Stress, Physiological/genetics , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism
6.
Genet Med ; 25(11): 100938, 2023 11.
Article in English | MEDLINE | ID: mdl-37454282

ABSTRACT

PURPOSE: Biallelic variants in TARS2, encoding the mitochondrial threonyl-tRNA-synthetase, have been reported in a small group of individuals displaying a neurodevelopmental phenotype but with limited neuroradiological data and insufficient evidence for causality of the variants. METHODS: Exome or genome sequencing was carried out in 15 families. Clinical and neuroradiological evaluation was performed for all affected individuals, including review of 10 previously reported individuals. The pathogenicity of TARS2 variants was evaluated using in vitro assays and a zebrafish model. RESULTS: We report 18 new individuals harboring biallelic TARS2 variants. Phenotypically, these individuals show developmental delay/intellectual disability, regression, cerebellar and cerebral atrophy, basal ganglia signal alterations, hypotonia, cerebellar signs, and increased blood lactate. In vitro studies showed that variants within the TARS2301-381 region had decreased binding to Rag GTPases, likely impairing mTORC1 activity. The zebrafish model recapitulated key features of the human phenotype and unraveled dysregulation of downstream targets of mTORC1 signaling. Functional testing of the variants confirmed the pathogenicity in a zebrafish model. CONCLUSION: We define the clinico-radiological spectrum of TARS2-related mitochondrial disease, unveil the likely involvement of the mTORC1 signaling pathway as a distinct molecular mechanism, and establish a TARS2 zebrafish model as an important tool to study variant pathogenicity.


Subject(s)
RNA, Transfer , Zebrafish , Animals , Humans , Mutation , Zebrafish/genetics , Mechanistic Target of Rapamycin Complex 1 , Ligases , Phenotype
7.
Redox Biol ; 63: 102722, 2023 07.
Article in English | MEDLINE | ID: mdl-37167879

ABSTRACT

Aminoacyl-tRNA synthetases (aaRSs) are indispensable players in translation. Usually, two or three genes encode cytoplasmic and mitochondrial threonyl-tRNA synthetases (ThrRSs) in eukaryotes. Here, we reported that Caenorhabditis elegans harbors only one tars-1, generating cytoplasmic and mitochondrial ThrRSs via translational reinitiation. Mitochondrial tars-1 knockdown decreased mitochondrial tRNAThr charging and translation and caused pleotropic phenotypes of delayed development, decreased motor ability and prolonged lifespan, which could be rescued by replenishing mitochondrial tars-1. Mitochondrial tars-1 deficiency leads to compromised mitochondrial functions including the decrease in oxygen consumption rate, complex Ⅰ activity and the activation of the mitochondrial unfolded protein response (UPRmt), which contributes to longevity. Furthermore, deficiency of other eight mitochondrial aaRSs in C. elegans and five in mammal also caused activation of the UPRmt. In summary, we deciphered the mechanism of one tars-1, generating two aaRSs, and elucidated the biochemical features and physiological function of C. elegans tars-1. We further uncovered a conserved connection between mitochondrial translation deficiency and UPRmt.


Subject(s)
Amino Acyl-tRNA Synthetases , Caenorhabditis elegans Proteins , Animals , Caenorhabditis elegans/metabolism , Longevity/genetics , Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans Proteins/metabolism , Unfolded Protein Response , Amino Acyl-tRNA Synthetases/genetics , Amino Acyl-tRNA Synthetases/metabolism , Tars/metabolism , RNA, Transfer/metabolism , Mammals/genetics , Mammals/metabolism
8.
Aging (Albany NY) ; 15(5): 1524-1542, 2023 03 06.
Article in English | MEDLINE | ID: mdl-36881401

ABSTRACT

INTRODUCTION: Endometrial cancer is the second largest and most common cancer in the world. It is urgent to explore novel biomarkers. METHODS: Data were obtained from The Cancer Genome Atlas (TCGA) database. The receiver operating characteristic (ROC) curves, Kaplan-Meier curves and Cox analysis, nomograms, gene set enrichment analysis (GSEA) were conducted. Cell proliferation experiments were performed in Ishikawa cell. RESULTS: TARS was significantly highly expressed in serous type, G3 grade, and deceased status. Significant association was between high TARS expression with poor overall survival (P = 0.0012) and poor disease specific survival (P = 0.0034). Significant differences were observed in advanced stage, G3 and G4, and old. The stage, diabetes, histologic grade, and TARS expression showed independent prognostic value for overall survival of endometrial cancer. The stage, histologic grade, and TARS expression showed independent prognostic value for disease specific survival of endometrial cancer. Activated CD4+ T cell, effector memory CD4+ T cell, memory B cell and type 2 T helper cell may participate in the high TARS expression related immune response in endometrial cancer. The CCK-8 results showed significantly inhibited cell proliferation in si-TARS (P < 0.05) and promoted cell proliferation in O-TARS (P < 0.05), confirmed by the colony formation and live/dead staining. CONCLUSION: High TARS expression was found in endometrial cancer with prognostic and predictive value. This study will provide new biomarker TARS for diagnosis and prognosis of endometrial cancer.


Subject(s)
Endometrial Neoplasms , Female , Humans , Endometrial Neoplasms/genetics , Cell Proliferation , Databases, Factual , Nomograms , ROC Curve , Prognosis , Biomarkers, Tumor
9.
Am J Med Genet A ; 191(1): 70-76, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36218002

ABSTRACT

Biallelic pathogenic variants in the TARS2 gene cause combined oxidative phosphorylation deficiency, subtype 21 (COXPD21, MIM #615918), which is a rare mitochondrial encephalomyopathy (ME) characterized by early-onset severe axial hypotonia, limb hypertonia, delayed psychomotor development, epilepsy, and brain anomalies. Currently, eight COXPD21 patients have been reported in the literature, and 11 pathogenic variants in TARS2 have been identified. Here, we report a 2-year-6-month-old Chinese female who presented with severe dystonia, developmental regression, absent speech, and intractable epilepsy. Laboratory examination showed persistently increased serum lactate. Brain MRI showed that the head of the caudate and partial lenticular nucleus were bilateral symmetrical T2-weighted imaging (T2WI) hyperintense and the corpus callosum was very thin. The clinical characteristics pointed to a ME. Trio-based whole-exome sequencing (WES) was employed to detect the causative variants. WES revealed novel compound heterozygous variants, c.470G>C (p.Thr157Arg) and c.2051C>T (p.Arg684Gln), in TARS2 in our patient that were inherited from the mother and father, respectively. Next, we systematically reviewed the available clinical features of COXPD21 patients and noticed that the reduced fetal movement observed in our patient may be a novel phenotype of COXPD21. These findings expand the mutation spectrum of TARS2 and provide insights into the genotype-phenotype relationship in COXPD21 as well as a foundation for its genetic counseling, diagnosis and treatment.


Subject(s)
Mitochondrial Encephalomyopathies , Humans , Female , Mitochondrial Encephalomyopathies/genetics , East Asian People , Exome Sequencing , Phenotype , Mutation
10.
Balkan J Med Genet ; 26(2): 59-64, 2023 Dec.
Article in English | MEDLINE | ID: mdl-38482264

ABSTRACT

Introduction: Pathogenic variants in TARS2 are associated with combined oxidative phosphorylation deficiency 21 (COXPD21), an autosomal recessive disorder usually presenting as mitochondrial encephalomyopathy. Kidney impairment has been documented in a minority of COXPD21 patients, mostly with distal renal tubular acidosis. Case report: We report on the first COXPD21 patient with generalized tubular dysfunction and early childhood progression to chronic kidney disease (CKD). Thorough diagnostic evaluation was initiated at six months of age due to failure to thrive, muscular hypotonia, motor delay and recurrent bronchiolitis. The boy was lost to follow-up until the age of two years, when he was readmitted with elevated creatinine level, reduced estimated glomerular filtrate rate, normochromic anaemia, metabolic acidosis and hyperkalaemia. Urine abnormalities pointed to generalized tubular dysfunction. Two novel heterozygous missense variants in TARS2 gene were detected by the means of whole exome sequencing: c.1298T>G (p.Phe438Cys) of maternal origin and c.1931A>T (p.Asp644Val) of paternal origin. Currently, at 4.5 years of age, the boy has failure to thrive, severe motor and verbal delay and end stage of CKD. We referred the patient to paediatric centre that provides renal replacement therapy. Conclusion: The overall clinical course in the patient we report on corresponds well to the previously reported cases of TARS2 related COXPD21, especially in regard to neurological and developmental aspects of the disease. However, we point out the generalized tubulopathy and early occurrence of CKD in our patient as atypical renal involvement in COXPD21. Additionally, this is the first report of hypothyroidism and hypoparathyroidism in a COXPD21 patient.

12.
Microbiol Spectr ; 9(2): e0052821, 2021 10 31.
Article in English | MEDLINE | ID: mdl-34668723

ABSTRACT

Staphylococcus aureus is an opportunistic pathogen that causes a wide range of infections. Due to the rapid evolution of antibiotic resistance that leads to treatment failure, it is important to understand the underlying mechanisms. Here, the cell wall structures of several laboratory vancomycin-intermediate S. aureus (VISA) strains were analyzed. Among the VISA strains were S. aureus VC40, which accumulated 79 mutations, including most importantly 2 exchanges in the histidine-kinase VraS, and developed full resistance against vancomycin (MIC, 64 µg/ml); a revertant S. aureus VC40R, which has an additional mutation in vraR (MIC, 4 µg/ml); and S. aureus VraS(VC40), in which the 2 vraS mutations were reconstituted into a susceptible background (MIC, 4 µg/ml). A ultraperformance liquid chromatography (UPLC) analysis showed that S. aureus VC40 had a significantly decreased cross-linking of the peptidoglycan. Both S. aureus VC40 and S. aureus VraS(VC40) displayed reduced autolysis and an altered autolysin profile in a zymogram. Most striking was the significant increase in d-alanine and N-acetyl-d-glucosamine (GlcNAc) substitution of the wall teichoic acids (WTAs) in S. aureus VC40. Nuclear magnetic resonance (NMR) analysis revealed that this strain had mostly ß-glycosylated WTAs in contrast to the other strains, which showed only the α-glycosylation peak. Salt stress induced the incorporation of ß-GlcNAc anomers and drastically increased the vancomycin MIC for S. aureus VC40R. In addition, ß-glycosylated WTAs decreased the binding affinity of AtlA, the major autolysin of S. aureus, to the cell wall, compared with α-glycosylated WTAs. In conclusion, there is a novel connection between wall teichoic acids, autolysis, and vancomycin susceptibility in S. aureus. IMPORTANCE Infections with methicillin-resistant Staphylococcus aureus are commonly treated with vancomycin. This antibiotic inhibits cell wall biosynthesis by binding to the cell wall building block lipid II. We set out to characterize the mechanisms leading to decreased vancomycin susceptibility in a laboratory-generated strain, S. aureus VC40. This strain has an altered cell wall architecture with a thick cell wall with low cross-linking, which provides decoy binding sites for vancomycin. The low cross-linking, necessary for this resistance mechanism, decreases the stability of the cell wall against lytic enzymes, which separate the daughter cells. Protection against these enzymes is provided by another cell wall polymer, the teichoic acids, which contain an unusually high substitution with sugars in the ß-conformation. By experimentally increasing the proportion of ß-N-acetyl-d-glucosamine in a closely related isolate through the induction of salt stress, we could show that the ß-conformation of the sugars plays a vital role in the resistance of S. aureus VC40.


Subject(s)
Teichoic Acids/metabolism , Teichoic Acids/pharmacology , Vancomycin-Resistant Staphylococcus aureus/drug effects , Vancomycin-Resistant Staphylococcus aureus/metabolism , Vancomycin/pharmacology , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Cell Wall/metabolism , DNA-Binding Proteins/genetics , Glycosylation , Methicillin-Resistant Staphylococcus aureus/drug effects , Methicillin-Resistant Staphylococcus aureus/genetics , Methicillin-Resistant Staphylococcus aureus/metabolism , Microbial Sensitivity Tests , Mutation , Peptidoglycan/metabolism , Staphylococcal Infections , Staphylococcus aureus/drug effects , Staphylococcus aureus/genetics , Staphylococcus aureus/metabolism , Vancomycin-Resistant Staphylococcus aureus/genetics
13.
Nanomaterials (Basel) ; 11(9)2021 Sep 13.
Article in English | MEDLINE | ID: mdl-34578693

ABSTRACT

The mild hydrotreatment of a model mixture of tar-type compounds (i.e., naphthalene, 1-methylnaphthalene, acenaphthylene, and phenanthrene) to produce partially hydrogenated products in the range of C9-C15 was studied over Pd supported on TiO2 possessing different crystalline phases. Pd-based catalysts were prepared and characterized by ICP analysis, XRD, N2 adsorption isotherms, HR-TEM, and NH3-TPD, among others. The hydrotreatment activity and selectivity towards the desired hydrogenated products (i.e., tetralin and others) increased with both the acidity and surface area of the catalyst, along with the presence of small and well distributed Pd nanoparticles. For the selected 1.3 wt% Pd/TiO2 nano catalyst, the operational conditions for maximizing tar conversion were found to be 275 °C, 30 bar of H2, and 0.2 g of catalyst for 7 h. The catalyst revealed remarkable hydrotreatment activity and stability after several reuses with practically no changes in TiO2 structure, quite low carbon deposition, and any Pd leaching detected, thus maintaining both a small Pd particle size and adequate distribution, even after regeneration of the catalyst. Additionally, the Pd/TiO2 nano catalyst was demonstrated to be more active than other commonly used metal/alumina and more selective than metal/USY zeolites in the mild hydrotreatment of tar-type compounds, thus providing an efficient catalytic route for obtaining partially hydrogenated C9-C15 hydrocarbons useful as jet-fuel components or additives (improvers), as well as chemicals and solvents for industrial applications.

14.
Appl Spectrosc ; 75(6): 690-697, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33599525

ABSTRACT

Online measurements of the raw gas composition, including tars and water, during biomass gasification provide valuable information in fundamental investigations and for process control. Mainly consisting of hydrocarbons, tars can, in principle, be measured using Fourier transform infrared (FT-IR) spectroscopy. However, an instrument subjected to raw gas runs the risk of condensation of tars on optical components and subsequent malfunction. Therefore, an external cell, heated to at least 400 ℃, has been designed to ensure that tars remain in the gas phase during FT-IR measurements. The cell was used for on-line FT-IR measurements of permanent gases (CO, CO2, CH4), water, and tars during the operation of a lab-scale downdraft gasifier using wood pellets, bark pellets, and char chips. Based on calibration, the measurement error of permanent gases was estimated to be 0.2%. Concentrations evaluated from spectral signatures of hydrocarbons in tar are in good agreement with results from solid-phase adsorption measurements and correlated well with operational changes in the gasifier.


Subject(s)
Gases , Tars , Biomass , Spectroscopy, Fourier Transform Infrared , Water
15.
Mol Cell ; 81(2): 398-407.e4, 2021 01 21.
Article in English | MEDLINE | ID: mdl-33340489

ABSTRACT

Mechanistic target of rapamycin complex 1 (mTORC1) controls cell growth and proliferation by sensing fluctuations in environmental cues such as nutrients, growth factors, and energy levels. The Rag GTPases (Rags) serve as a critical module that signals amino acid (AA) availability to modulate mTORC1 localization and activity. Recent studies have demonstrated how AAs regulate mTORC1 activity through Rags. Here, we uncover an unconventional pathway that activates mTORC1 in response to variations in threonine (Thr) levels via mitochondrial threonyl-tRNA synthetase TARS2. TARS2 interacts with inactive Rags, particularly GTP-RagC, leading to increased GTP loading of RagA. mTORC1 activity in cells lacking TARS2 is resistant to Thr repletion, showing that TARS2 is necessary for Thr-dependent mTORC1 activation. The requirement of TARS2, but not cytoplasmic threonyl-tRNA synthetase TARS, for this effect demonstrates an additional layer of complexity in the regulation of mTORC1 activity.


Subject(s)
Mechanistic Target of Rapamycin Complex 1/genetics , Mitochondria/metabolism , Monomeric GTP-Binding Proteins/genetics , Threonine-tRNA Ligase/genetics , Threonine/metabolism , Gene Expression Regulation , Guanosine Diphosphate/metabolism , Guanosine Triphosphate/metabolism , HEK293 Cells , Humans , Isoenzymes/antagonists & inhibitors , Isoenzymes/genetics , Isoenzymes/metabolism , Lysosomes/metabolism , Mechanistic Target of Rapamycin Complex 1/metabolism , Monomeric GTP-Binding Proteins/metabolism , Protein Binding , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Regulatory-Associated Protein of mTOR/genetics , Regulatory-Associated Protein of mTOR/metabolism , Signal Transduction , Threonine-tRNA Ligase/antagonists & inhibitors , Threonine-tRNA Ligase/metabolism
16.
BMC Med Genet ; 21(1): 217, 2020 11 05.
Article in English | MEDLINE | ID: mdl-33153448

ABSTRACT

BACKGROUND: Mitochondrial encephalomyopathy caused by bi-allelic deleterious variants in TARS2 is rare. To date, only two pedigrees were reported in the literature and the connection between the gene and disease needs further study. CASE PRESENTATION: We report one infant who presented with limb hypertonia, epilepsy, developmental delay, and increased serum lactate from a non-consanguineous Chinese family. Whole-genome sequencing was performed to help to underlie the cause. We identified compound heterozygous variants c.470C > G, p.Thr157Arg and c.2143G > A, p.Glu715Lys in TARS2 and the variants were confirmed by Sanger sequencing. The patient was diagnosed with combined oxidative phosphorylation deficiency 21 according to the Online Mendelian Inheritance in Man (OMIM) database based on the clinical data and the deleterious effect of the two variants in TARS2 predicted by in silico tools. CONCLUSIONS: We presented one case diagnosed with combined oxidative phosphorylation deficiency 21 based on clinical characteristics and genetic analysis. This is the first case in China and the fourth case in the world based on our document retrieval. This study facilitates the understanding of combined oxidative phosphorylation deficiency disease and demonstrates that the next-generation sequencing has a high potential to study inherited disease with high phenotypic heterogeneity and genetic heterogeneity including mitochondrial diseases such as combined oxidative phosphorylation deficiency.


Subject(s)
Developmental Disabilities/genetics , Epilepsy/genetics , Mitochondrial Diseases/genetics , Mitochondrial Encephalomyopathies/genetics , Mutation , Threonine-tRNA Ligase/genetics , Asian People , Developmental Disabilities/diagnosis , Developmental Disabilities/ethnology , Developmental Disabilities/pathology , Epilepsy/diagnosis , Epilepsy/ethnology , Epilepsy/pathology , Family , Gene Expression , Heterozygote , High-Throughput Nucleotide Sequencing , Humans , Infant , Lactic Acid/blood , Male , Mitochondrial Diseases/diagnosis , Mitochondrial Diseases/ethnology , Mitochondrial Diseases/pathology , Mitochondrial Encephalomyopathies/diagnosis , Mitochondrial Encephalomyopathies/ethnology , Mitochondrial Encephalomyopathies/pathology , Pedigree , Threonine-tRNA Ligase/deficiency
18.
Bioresour Technol ; 267: 333-340, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30029179

ABSTRACT

An efficient method for microwave-assisted low temperature catalytic elimination of primary tars using cheap biochar as catalyst has been developed along with H2 rich syngas production. Tar removal efficiency reached 94.03% after 8 min reaction at 600 °C, while the concentration of H2 and syngas was up to 50.5 vol% and 94.5 vol% respectively, which were significantly comparable to conventional technologies at 700-900 °C. The FT-IR, ICP and EDX results indicated that the biochar surface contained O-containing functional groups and 12.6 wt% uniformly dispersed alkali and alkaline earth metals (AAEMs) in the carbon skeleton. The low temperature behaviours were attributed to the hot spots, which were induced by the increased dielectric properties of biochar and decentralized AAEMs under microwave heating. Possible reaction mechanism for the elimination of primary tars over biochar catalysts were discussed based on this experimental study.


Subject(s)
Charcoal , Microwaves , Tars , Spectroscopy, Fourier Transform Infrared , Temperature
19.
Front Genet ; 9: 168, 2018.
Article in English | MEDLINE | ID: mdl-29868116

ABSTRACT

There is increasing evidence suggesting the contribution of non-coding RNAs (ncRNAs) to the phenotypic and physiological complexity of organisms. A novel ncRNA species has been identified near the transcription boundaries of protein-coding genes in eukaryotes, bacteria, and archaea. This review provides a detailed description of these transcription boundary-associated RNAs (TBARs), including their classification. Based on their genomic distribution, TBARs are divided into two major groups: promoter-associated RNAs (PARs) and terminus-associated RNAs (TARs). Depending on the sequence length, each group is further classified into long RNA species (>200 nt) and small RNA species (<200 nt). According to these rules of TBAR classification, divergent ncRNAs with confusing nomenclatures, such as promoter upstream transcripts (PROMPTs), upstream antisense RNAs (uaRNAs), stable unannotated transcripts (SUTs), cryptic unstable transcripts (CUTs), upstream non-coding transcripts (UNTs), transcription start site-associated RNAs (TSSaRNAs), transcription initiation RNAs (tiRNAs), and transcription termination site-associated RNAs (TTSaRNAs), were assigned to specific classes. Although the biogenesis pathways of PARs and TARs have not yet been clearly elucidated, previous studies indicate that some of the PARs have originated either through divergent transcription or via RNA polymerase pausing. Intriguing findings regarding the functional implications of the TBARs such as the long-range "gene looping" model, which explains their role in the transcriptional regulation of protein-coding genes, are also discussed. Altogether, this review provides a comprehensive overview of the current research status of TBARs, which will promote further investigations in this research area.

20.
Waste Manag ; 78: 621-629, 2018 Aug.
Article in English | MEDLINE | ID: mdl-32559953

ABSTRACT

Additives can have a significant impact on the pyrolysis process. The effects of three additives (CaO, MSW char and biomass) on the pyrolysis characteristics of municipal solid waste (MSW) were investigated using a fixed-bed reactor. In addition, the effects of additives and temperature on the MSW pyrolysis product yield, the composition of MSW pyrolysis gases, and the composition of MSW pyrolysis tar were investigated using fixed bed reactor, GC-MS and FTIR, respectively. The results showed that the maximum tar yield of the MSW reached 28.73% at 600 °C and the tar yield decreased with increasing amounts of CaO and MSW. The tar yield began to decrease when the additive amount of CaO was 5% and decreased to 23.05% when the additive amount of MSW char (C) was 30%. Synergistic pyrolysis of the biomass and MSW was observed when the additive amount of the pine increased to 75% (with a tar yield of 37.91%). Regarding gas composition, with increasing additives content, the CO2 yield decreased, while the CO yield increased. According to the FTIR analysis of the tar, CaO enhanced the condensation of the aromatic rings and converted the aliphatic hydrocarbons, while C reduced the oxygenic groups of the tar. The GC-MS results revealed that the additives decreased the yield of carboxylic acid and ethanol, and increased the ester yield. The additives were also found to have a deoxidation effect that decreased the acid content, potentially improving the quality and stability of the tar.

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