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1.
Biomolecules ; 13(3)2023 02 28.
Article in English | MEDLINE | ID: mdl-36979385

ABSTRACT

Cells use the actin cytoskeleton for many of their functions, including their division, adhesion, mechanosensing, endo- and phagocytosis, migration, and invasion. Actin bundles are the main constituent of actin-rich structures involved in these processes. An ever-increasing number of proteins that crosslink actin into bundles or regulate their morphology is being identified in cells. With recent advances in high-resolution microscopy and imaging techniques, the complex process of bundles formation and the multiple forms of physiological bundles are beginning to be better understood. Here, we review the physiochemical and biological properties of four families of highly conserved and abundant actin-bundling proteins, namely, α-actinin, fimbrin/plastin, fascin, and espin. We describe the similarities and differences between these proteins, their role in the formation of physiological actin bundles, and their properties-both related and unrelated to their bundling abilities. We also review some aspects of the general mechanism of actin bundles formation, which are known from the available information on the activity of the key actin partners involved in this process.


Subject(s)
Actin Cytoskeleton , Actins , Actins/metabolism , Actin Cytoskeleton/metabolism , Actinin/genetics , Actinin/analysis , Actinin/metabolism
2.
Int J Legal Med ; 134(5): 1775-1782, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32632798

ABSTRACT

In recent years, protein decomposition has become of increasing interest for the use in forensic estimation of the postmortem interval (PMI). Especially skeletal muscle tissue has proven to be a prime target tissue, among other reasons, due to its large abundance in the human body. In this regard, it is important to know whether there are any intra- and intermuscular differences in the behavior of protein degradation. Thus, samples from different locations within several skeletal muscles as well as from cardiac and smooth muscle tissue samples were collected from three autopsy cases with varying degree of decomposition. Samples were analyzed by SDS-PAGE and Western blotting and compared for protein degradation patterns. Intramuscular variations turned out to be minimal and without major influence for the use of the method. Observed intermuscular differences provide possibilities for future improvement of the precision and temporal application range. The results of this study show the strengths and current limitations of protein degradation-based PMI estimation and provide a deeper understanding of intraindividual postmortem protein degradation processes.


Subject(s)
Actinin/analysis , Muscle, Skeletal/chemistry , Muscle, Smooth/chemistry , Myocardium/chemistry , Proteolysis , Tubulin/analysis , Vinculin/analysis , Adult , Aged , Blotting, Western , Electrophoresis, Polyacrylamide Gel , Forensic Pathology , Humans , Male , Middle Aged , Postmortem Changes
3.
JAMA Psychiatry ; 77(11): 1172-1180, 2020 11 01.
Article in English | MEDLINE | ID: mdl-32609320

ABSTRACT

Importance: Identifying genes and proteins for cognitive resilience (ie, targets that may be associated with slowing or preventing cognitive decline regardless of the presence, number, or combination of common neuropathologic conditions) provides a complementary approach to developing novel therapeutics for the treatment and prevention of Alzheimer disease and related dementias. Objective: To identify proteins associated with cognitive resilience via a proteome-wide association study of the human dorsolateral prefrontal cortex. Design, Setting, and Participants: This study used data from 391 community-dwelling older persons who participated in the Religious Orders Study and the Rush Memory and Aging Project. The Religious Orders Study began enrollment January 1, 1994, and the Rush Memory and Aging Project began enrollment September 1, 1997, and data were collected and analyzed through October 23, 2019. Exposures: Participants had undergone annual detailed clinical examinations, postmortem evaluations, and tandem mass tag proteomics analyses. Main Outcomes and Measures: The outcome of cognitive resilience was defined as a longitudinal change in cognition over time after controlling for common age-related neuropathologic indices, including Alzheimer disease, Lewy bodies, transactive response DNA-binding protein 43, hippocampal sclerosis, infarcts, and vessel diseases. More than 8000 high abundance proteins were quantified from frozen dorsolateral prefrontal cortex tissue using tandem mass tag and liquid chromatography-mass spectrometry. Results: There were 391 participants (273 women); their mean (SD) age was 79.7 (6.7) years at baseline and 89.2 (6.5) years at death. Eight cortical proteins were identified in association with cognitive resilience: a higher level of NRN1 (estimate, 0.140; SE, 0.024; P = 7.35 × 10-9), ACTN4 (estimate, 0.321; SE, 0.065; P = 9.94 × 10-7), EPHX4 (estimate, 0.198; SE, 0.042; P = 2.13 × 10-6), RPH3A (estimate, 0.148; SE, 0.031; P = 2.58 × 10-6), SGTB (estimate, 0.211; SE, 0.045; P = 3.28 × 10-6), CPLX1 (estimate, 0.136; SE, 0.029; P = 4.06 × 10-6), and SH3GL1 (estimate, 0.179; SE, 0.039; P = 4.21 × 10-6) and a lower level of UBA1 (estimate, -0.366; SE, 0.076; P = 1.43 × 10-6) were associated with greater resilience. Conclusions and Relevance: These protein signals may represent novel targets for the maintenance of cognition in old age.


Subject(s)
Adaptation, Psychological , Cognitive Dysfunction/blood , Independent Living/statistics & numerical data , Proteins/analysis , Actinin/analysis , Actinin/blood , Adaptor Proteins, Signal Transducing/analysis , Adaptor Proteins, Signal Transducing/blood , Adaptor Proteins, Vesicular Transport/analysis , Adaptor Proteins, Vesicular Transport/blood , Aged , Aged, 80 and over , Cognitive Dysfunction/epidemiology , Epoxide Hydrolases/analysis , Epoxide Hydrolases/blood , Female , GPI-Linked Proteins/analysis , GPI-Linked Proteins/blood , Humans , Independent Living/psychology , Intracellular Signaling Peptides and Proteins/analysis , Intracellular Signaling Peptides and Proteins/blood , Male , Molecular Chaperones/analysis , Molecular Chaperones/blood , Nerve Tissue Proteins/analysis , Nerve Tissue Proteins/blood , Neuropeptides/analysis , Neuropeptides/blood , Ubiquitin-Activating Enzymes/analysis , Ubiquitin-Activating Enzymes/blood , Vesicular Transport Proteins/analysis , Vesicular Transport Proteins/blood , Rabphilin-3A
4.
Drug Des Devel Ther ; 14: 1717-1727, 2020.
Article in English | MEDLINE | ID: mdl-32440097

ABSTRACT

PURPOSE: Oral squamous cell carcinoma (OSCC) is a common malignancy of the oral cavity. As the survival rate of OSCC patients is low, it is crucial to explore new markers and therapeutic targets for early diagnosis of the disease. A high level of actinin alpha 1 (ACTN1) in patients could serve as an independent prognostic factor of acute myeloid leukemia. However, the role of ACTN1 in OSCC remains unclear. In the present study, we aimed to investigate the role of ACTN1 in OSCC. METHODS: ACTN1 protein levels in tissues were determined by immunohistochemical (IHC) staining. The correlation of ACTN1 expression with clinicopathological features and prognosis was analyzed. Univariate and multivariate analyses were performed. The effect of ACTN1 knockdown on cell proliferation, migration, invasion, apoptosis, epithelial-mesenchymal transition (EMT), and the cell cycle was evaluated using Western blotting, Cell Counting Kit­8 (CCK8) assays, flow cytometry analysis, transwell assays, wound-healing assays, and nude mouse models of subcutaneous xenograft and pulmonary metastasis. RESULTS: Based on the total score of ACTN1 IHC staining analysis, ACTN1 expression was found to be low in 10 normal mucosal tissues, 48 normal mucosal tissues adjacent to OSCC, and 19 OSCC tissues, but high in 29 OSCC tissues. ACTN1 protein levels were significantly associated with the clinical stage and node metastasis, and a high ACTN1 protein level indicated poor prognosis. Moreover, ACTN1 expression was an independent predictor of poor prognosis of OSCC. Using in vitro assays, we found that ACTN1 knockdown could induce cell cycle arrest, promote apoptosis, and inhibit EMT and cell proliferation, migration, and invasion in the OSCC cell lines, SCC-15 and HSC-3. Moreover, ACTN1 knockdown inhibited subcutaneous tumor growth and pulmonary metastasis in vivo. CONCLUSION: ACTN1 levels were significantly associated with the clinical stage and node metastasis, and a high ACTN1 protein level indicated poor prognosis. Moreover, ACTN1 knockdown could suppress cell proliferation and metastasis of OSCC. Our results suggested that ACTN1 may serve as a diagnostic and prognostic marker of OSCC.


Subject(s)
Actinin/metabolism , Cell Proliferation , Gene Silencing , Mouth Neoplasms/diagnosis , Mouth Neoplasms/metabolism , Squamous Cell Carcinoma of Head and Neck/diagnosis , Squamous Cell Carcinoma of Head and Neck/metabolism , Actinin/analysis , Actinin/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Female , Humans , Immunohistochemistry , Male , Middle Aged , Mouth Neoplasms/pathology , Neoplasm Metastasis , Prognosis , Squamous Cell Carcinoma of Head and Neck/pathology , Young Adult
5.
Biochem Biophys Res Commun ; 523(3): 588-594, 2020 03 12.
Article in English | MEDLINE | ID: mdl-31941606

ABSTRACT

Prostate cancer is the second leading cause of cancer death in men in the United States. Several novel therapeutic agents have been developed for castration-resistant prostate cancer (CRPC), but the prognosis for patients with CRPC remains poor. The identification of novel therapeutic targets for CRPC is an urgent issue. Exosomes are small vesicles secreted by a variety of cells, and exosomes derived from cancer cells have been reported to circulate in the patient's bodily fluids, promoting metastasis and invasion. We aimed to identify novel therapeutic targets for CRPC by proteomic analysis of serum exosomes. Exosomes were isolated by ultracentrifugation of sera from 36 men with metastatic prostate cancer: untreated (n = 8), well-controlled with primary androgen deprivation therapy (ADT) (n = 8), and CRPC (n = 20). We identified 823 proteins in the serum exosomes. Six proteins were increased in CRPC patients compared with untreated patients. In contrast, only ACTN4 was increased in the CRPC patients compared to the ADT patients. We focused on ACTN4 as a candidate for targeted therapeutics. ACTN4 was highly expressed in the prostate cancer cell line DU145 as well as exosomes from this line. RNA interference-mediated downregulation of ACTN4 significantly attenuated cell proliferation and invasion in DU145 cells. ACTN4 could be a potential therapeutic target for CRPC.


Subject(s)
Actinin/genetics , Exosomes/genetics , Gene Expression Regulation, Neoplastic , Prostatic Neoplasms, Castration-Resistant/genetics , Actinin/analysis , Cell Line, Tumor , Exosomes/pathology , Humans , Male , Neoplasm Invasiveness/genetics , Neoplasm Invasiveness/pathology , Neoplasm Invasiveness/prevention & control , Prostatic Neoplasms, Castration-Resistant/pathology , Prostatic Neoplasms, Castration-Resistant/therapy , Proteomics , RNA Interference , RNAi Therapeutics
6.
Sci Rep ; 8(1): 13557, 2018 09 10.
Article in English | MEDLINE | ID: mdl-30202043

ABSTRACT

After a radiological incident, there is an urgent need for fast and reliable bioassays to identify radiation-exposed individuals within the first week post exposure. This study aimed to identify candidate radiation-responsive protein biomarkers in human lymphocytes in vivo using humanized NOD scid gamma (Hu-NSG) mouse model. Three days after X-irradiation (0-2 Gy, 88 cGy/min), human CD45+ lymphocytes were collected from the Hu-NSG mouse spleen and quantitative changes in the proteome of the human lymphocytes were analysed by mass spectrometry. Forty-six proteins were differentially expressed in response to radiation exposure. FDXR, BAX, DDB2 and ACTN1 proteins were shown to have dose-dependent response with a fold change greater than 2. When these proteins were used to estimate radiation dose by linear regression, the combination of FDXR, ACTN1 and DDB2 showed the lowest mean absolute errors (≤0.13 Gy) and highest coefficients of determination (R2 = 0.96). Biomarker validation studies were performed in human lymphocytes 3 days after irradiation in vivo and in vitro. In conclusion, this is the first study to identify radiation-induced human protein signatures in vivo using the humanized mouse model and develop a protein panel which could be used for the rapid assessment of absorbed dose 3 days after radiation exposure.


Subject(s)
Dose-Response Relationship, Radiation , Gene Expression Regulation/radiation effects , Radiation Injuries/diagnosis , Radiometry/methods , X-Rays/adverse effects , Actinin/analysis , Actinin/metabolism , Animals , Biomarkers/analysis , Cells, Cultured , Cord Blood Stem Cell Transplantation , DNA-Binding Proteins/analysis , DNA-Binding Proteins/metabolism , Disease Models, Animal , Female , Ferredoxin-NADP Reductase/analysis , Ferredoxin-NADP Reductase/metabolism , Healthy Volunteers , Humans , Lymphocytes/metabolism , Lymphocytes/radiation effects , Mice , Mice, Inbred NOD , Mice, SCID , Primary Cell Culture , Proteomics , Radiation Injuries/blood , Radiation Injuries/urine , Spleen/cytology , Transplantation Chimera , Whole-Body Irradiation , bcl-2-Associated X Protein/analysis , bcl-2-Associated X Protein/metabolism
7.
Lab Invest ; 97(9): 1084-1094, 2017 09.
Article in English | MEDLINE | ID: mdl-28581489

ABSTRACT

Metastasis increases the mortality rate of gastric cancer, which is the third leading cause of cancer-associated deaths worldwide. This study aims to identify the genes promoting metastasis of gastric cancer (GC). A human cell motility PCR array was used to analyze a pair of tumor and non-tumor tissue samples from a patient with stage IV GC (T3N3M1). Expression of the dysregulated genes was then evaluated in GC tissue samples (n=10) and cell lines (n=6) via qPCR. Expression of α-actinin-4 (ACTN4) was validated in a larger sample size (n=47) by qPCR, western blot and immunohistochemistry. Knockdown of ACTN4 with specific siRNAs was performed in GC cells, and adhesion assays, transwell invasion assays and migration assays were used to evaluate the function of these cells. Expression of potential targets of ACTN4 were then evaluated by qPCR. Thirty upregulated genes (greater than twofold) were revealed by the PCR array. We focused on ACTN4 because it was upregulated in 6 out of 10 pairs of tissue samples and 5 out of 6 GC cell lines. Further study indicated that ACTN4 was upregulated in 22/32 pairs of tissue samples at stage III &IV (P=0.0069). Knockdown of ACTN4 in GC cells showed no significant effect on cell proliferation, but significantly increased cell-matrix adhesion, as well as reduced migration and invasion of AGS, MKN7 and NCI-N87 cells. We found that NF-κB was downregulated in GC with the knockdown of ACTN4. In conclusion, this is the first study to indicate that ACTN4 is significantly upregulated in patients with metastatic GC. ACTN4 reduces cell adhesion and enhances migration and invasion of GC cells and may therefore be a novel therapeutic target for GC.


Subject(s)
Actinin/analysis , Actinin/metabolism , Gastric Mucosa/metabolism , Stomach Neoplasms/metabolism , Stomach Neoplasms/pathology , Actinin/genetics , Adult , Aged , Aged, 80 and over , Cell Line, Tumor , Cell Movement/genetics , Cohort Studies , Female , Gene Expression Profiling , Gene Knockdown Techniques , Humans , Male , Middle Aged , NF-kappa B/analysis , NF-kappa B/metabolism , Stomach/chemistry , Stomach Neoplasms/chemistry , Up-Regulation/genetics
8.
J Cardiothorac Surg ; 11(1): 163, 2016 Dec 01.
Article in English | MEDLINE | ID: mdl-27906085

ABSTRACT

BACKGROUND: Thousands of babies are born with congenital heart defects that require surgical repair involving a prosthetic implant. Lack of growth in prosthetic grafts is especially detrimental in pediatric surgery. Cell seeded biodegradable tissue engineered grafts are a novel solution to this problem. The purpose of the present study is to evaluate the feasibility of seeding human induced pluripotent stem cell derived cardiomyocytes (hiPS-CMs) onto a biodegradable cardiac patch. METHODS: The hiPS-CMs were cultured on a biodegradable patch composed of a polyglycolic acid (PGA) and a 50:50 poly (l-lactic-co-ε-caprolactone) copolymer (PLCL) for 1 week. Male athymic rats were randomly divided into 2 groups of 10 animals each: 1. hiPS-CM seeded group, and 2. Unseeded group. After culture, the cardiac patch was implanted to repair a defect with a diameter of 2 mm created in the right ventricular outflow tract (RVOT) wall. Hearts were explanted at 4 (n = 2), 8 (n = 2), and 16 (n = 6) weeks after patch implantation. Explanted patches were assessed immunohistochemically. RESULTS: Seeded patch explants did not stain positive for α-actinin (marker of cardiomyocytes) at the 4 week time point, suggesting that the cultured hiPS-CMs evacuated the patch in the early phase of tissue remodeling. However, after 16 weeks implantation, the area fraction of positively stained α-actinin cells was significantly higher in the seeded group than in the unseeded group (Seeded group: 6.1 ± 2.8% vs. Unseeded group: 0.95 ± 0.50%, p = 0.004), suggesting cell seeding promoted regenerative proliferation of host cardiomyocytes. CONCLUSIONS: Seeded hiPS-CMs were not present in the patch after 4 weeks. However, we surmise that they influenced the regeneration of host cardiomyocytes via a paracrine mechanism. Tissue-engineered hiPS-CMs seeded cardiac patches warrant further investigation for use in the repair of congenital heart diseases.


Subject(s)
Absorbable Implants , Heart Defects, Congenital/surgery , Heart Ventricles/surgery , Myocytes, Cardiac/physiology , Myocytes, Cardiac/transplantation , Regeneration , Actinin/analysis , Animals , Caproates , Disease Models, Animal , Feasibility Studies , Heart Ventricles/chemistry , Humans , Induced Pluripotent Stem Cells , Lactones , Male , Myocardium/chemistry , Polyglycolic Acid , Random Allocation , Rats , Rats, Nude , Tissue Engineering , Tissue Scaffolds
9.
Anal Biochem ; 504: 38-40, 2016 07 01.
Article in English | MEDLINE | ID: mdl-27060530

ABSTRACT

The use of Western blot analysis is of great importance in research, and the measurement of housekeeping proteins is commonly used for loading controls. However, Ponceau S staining has been shown to be an alternative to analysis of housekeeping protein levels as loading controls in some conditions. In the current study, housekeeping protein levels were measured in skeletal muscle hypertrophy and streptozotocin-induced diabetes experimental models. The following housekeeping proteins were investigated: glyceraldehyde-3-phosphate dehydrogenase (GAPDH), ß-actin, α-tubulin, γ-tubulin, and α-actinin. Evidence is presented that Ponceau S is more reliable than housekeeping protein levels for specific protein quantifications in Western blot analysis.


Subject(s)
Actinin/analysis , Actins/analysis , Diabetes Mellitus, Experimental/metabolism , Glyceraldehyde-3-Phosphate Dehydrogenases/analysis , Muscle, Skeletal/metabolism , Tubulin/analysis , Animals , Blotting, Western , Diabetes Mellitus, Experimental/chemically induced , Glyceraldehyde-3-Phosphate Dehydrogenases/metabolism , Hyperglycemia/chemically induced , Hyperglycemia/metabolism , Male , Muscle, Skeletal/chemistry , Rats , Rats, Wistar , Streptozocin
10.
Science ; 349(6251): aab3500, 2015 Aug 28.
Article in English | MEDLINE | ID: mdl-26315442

ABSTRACT

Super-resolution fluorescence microscopy is distinct among nanoscale imaging tools in its ability to image protein dynamics in living cells. Structured illumination microscopy (SIM) stands out in this regard because of its high speed and low illumination intensities, but typically offers only a twofold resolution gain. We extended the resolution of live-cell SIM through two approaches: ultrahigh numerical aperture SIM at 84-nanometer lateral resolution for more than 100 multicolor frames, and nonlinear SIM with patterned activation at 45- to 62-nanometer resolution for approximately 20 to 40 frames. We applied these approaches to image dynamics near the plasma membrane of spatially resolved assemblies of clathrin and caveolin, Rab5a in early endosomes, and α-actinin, often in relationship to cortical actin. In addition, we examined mitochondria, actin, and the Golgi apparatus dynamics in three dimensions.


Subject(s)
Cytoskeleton/ultrastructure , Endocytosis , Imaging, Three-Dimensional/methods , Microscopy, Fluorescence/methods , Organelles/ultrastructure , Actinin/analysis , Actins/analysis , Animals , Cell Line , Clathrin/analysis , Clathrin-Coated Vesicles/chemistry , Clathrin-Coated Vesicles/ultrastructure , Coated Pits, Cell-Membrane/chemistry , Coated Pits, Cell-Membrane/ultrastructure , Cytoskeleton/chemistry , Cytoskeleton/metabolism , Endosomes/chemistry , Endosomes/ultrastructure , Golgi Apparatus/ultrastructure , Image Processing, Computer-Assisted , Imaging, Three-Dimensional/instrumentation , Microscopy, Fluorescence/instrumentation , Mitochondria/chemistry , Mitochondria/ultrastructure , Organelles/chemistry , Organelles/metabolism , rab5 GTP-Binding Proteins/analysis
11.
J Vis Exp ; (98)2015 Apr 09.
Article in English | MEDLINE | ID: mdl-25938862

ABSTRACT

Cell culture has become increasingly important in cardiac research, but due to the limited proliferation of cardiomyocytes, culturing cardiomyocytes is difficult and time consuming. The most commonly used cells are neonatal rat cardiomyocytes (NRCMs), which require isolation every time cells are needed. The birth of the rats can be unpredictable. Cryopreservation is proposed to allow for cells to be stored until needed, yet freezing/thawing methods for primary cardiomyocytes are challenging due to the sensitivity of the cells. Using the proper cryoprotectant, dimethyl sulfoxide (DMSO), cryopreservation was achieved. By slowly extracting the DMSO while thawing the cells, cultures were obtained with viable NRCMs. NRCM phenotype was verified using immunocytochemistry staining for α-sarcomeric actinin. In addition, cells also showed spontaneous contraction after several days in culture. Cell viability after thawing was acceptable at 40-60%. In spite of this, the methods outlined allow one to easily cryopreserve and thaw NRCMs. This gives researchers a greater amount of flexibility in planning experiments as well as reducing the use of animals.


Subject(s)
Cryopreservation/methods , Myocytes, Cardiac/cytology , Actinin/analysis , Actinin/metabolism , Animals , Animals, Newborn , Cell Culture Techniques , Cell Separation/methods , Cell Survival/physiology , Cryoprotective Agents/chemistry , Dimethyl Sulfoxide/chemistry , Freezing , Myocytes, Cardiac/metabolism , Rats , Sarcomeres/chemistry , Sarcomeres/metabolism
12.
Anticancer Res ; 35(3): 1663-7, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25750325

ABSTRACT

BACKGROUND: The alternatively spliced actinin-4 variant (ACTN4va) is expressed in small-cell lung cancer (SCLC) and is thought to be a potential diagnostic marker. However, ACTN4va expression has not been examined in transbronchial biopsy specimens. MATERIALS AND METHODS: We retrospectively examined the relationship between ACTN4va expression, clinical factors and survival in 104 consecutive newly-diagnosed SCLC patients. RESULTS: Of the 104 screened cases, 83 (median age=69 years; transbronchial biopsy, 71) were included in our study. Survival was significantly different in the group with no distant metastasis (1996 vs. 422 days, respectively; p=0.000115) but was not significantly different with regard to ACTN4va expression in the group with distant metastasis (293 vs. 254 days, respectively; p=0.678). CONCLUSION: ACTN4va expression was identifiable in small biopsy samples. ACTN4va expression was also significantly related to distant metastasis and could stratify SCLC patients according to prognosis.


Subject(s)
Actinin/analysis , Alternative Splicing , Biomarkers, Tumor/analysis , Lung Neoplasms/mortality , Small Cell Lung Carcinoma/mortality , Actinin/genetics , Aged , Aged, 80 and over , Biomarkers, Tumor/genetics , Biopsy , Female , Humans , Lung Neoplasms/chemistry , Lung Neoplasms/pathology , Male , Middle Aged , Neoplasm Metastasis , Prognosis , Retrospective Studies , Small Cell Lung Carcinoma/chemistry , Small Cell Lung Carcinoma/pathology
13.
Clin Exp Nephrol ; 19(3): 481-8, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25117488

ABSTRACT

BACKGROUND: Podocyte foot process effacement is a uniform finding in kidneys with heavy proteinuria. Its molecular mechanisms, however, are unsolved. We analyzed the expression of podocyte proteins in two kidney disorders: Congenital nephrotic syndrome of the Finnish type (CNF) and minimal change nephrotic syndrome (MCNS). METHODS: Immunoperoxidase and immunofluorescence stainings were used to semiquantitatively analyze the expression of 13 and 4 podocyte proteins from different cellular compartments in CNF and MCNS, respectively. RESULTS: The expression of a major slit diaphragm (SD) protein, Neph 1, showed a 46-fold decrease (p < 0.0001) in CNF kidneys as compared to controls. The three cytosolic adaptor proteins, podocin, NCK1/2, CD2AP, connecting SD proteins to the actin cytoskeleton were slightly upregulated (1.1-fold, 1.4-fold, and 3.3-fold, respectively). Also, the staining of the two actin-regulator proteins, ACTN4 and INF2, was modestly increased (2.2-fold and 1.7-fold, respectively, p < 0.0001). Staining for α3-integrin showed 1.9-fold increase (p < 0.0001) indicating that the major podocyte anchoring complex, α3ß1, was well preserved in CNF glomeruli. In contrast to CNF kidneys, Neph1 FAT1, ACTN4, and CD2AP were quite normally expressed in proteinuric and non-proteinuric MCNS kidneys. CONCLUSION: CNF kidneys lacking nephrin show decreased expression of other SD proteins but not cytosolic podocyte proteins involved in the foot process architecture or function. In MCNS kidneys, these changes in expression were not observed.


Subject(s)
Nephrosis, Lipoid/metabolism , Nephrotic Syndrome/metabolism , Podocytes/chemistry , Actinin/analysis , Adaptor Proteins, Signal Transducing/analysis , Adult , Cadherins/analysis , Cytoskeletal Proteins/analysis , Formins , Humans , Immunohistochemistry , Infant , Integrin alpha3/analysis , Integrin alpha3beta1/analysis , Intracellular Signaling Peptides and Proteins/analysis , Membrane Proteins/analysis , Microfilament Proteins/analysis
14.
Br J Cancer ; 111(6): 1201-12, 2014 Sep 09.
Article in English | MEDLINE | ID: mdl-25032733

ABSTRACT

BACKGROUND: Key challenges of biopsy-based determination of prostate cancer aggressiveness include tumour heterogeneity, biopsy-sampling error, and variations in biopsy interpretation. The resulting uncertainty in risk assessment leads to significant overtreatment, with associated costs and morbidity. We developed a performance-based strategy to identify protein biomarkers predictive of prostate cancer aggressiveness and lethality regardless of biopsy-sampling variation. METHODS: Prostatectomy samples from a large patient cohort with long follow-up were blindly assessed by expert pathologists who identified the tissue regions with the highest and lowest Gleason grade from each patient. To simulate biopsy-sampling error, a core from a high- and a low-Gleason area from each patient sample was used to generate a 'high' and a 'low' tumour microarray, respectively. RESULTS: Using a quantitative proteomics approach, we identified from 160 candidates 12 biomarkers that predicted prostate cancer aggressiveness (surgical Gleason and TNM stage) and lethal outcome robustly in both high- and low-Gleason areas. Conversely, a previously reported lethal outcome-predictive marker signature for prostatectomy tissue was unable to perform under circumstances of maximal sampling error. CONCLUSIONS: Our results have important implications for cancer biomarker discovery in general and development of a sampling error-resistant clinical biopsy test for prediction of prostate cancer aggressiveness.


Subject(s)
Biomarkers, Tumor/analysis , Prostate/pathology , Prostatic Neoplasms/mortality , Prostatic Neoplasms/pathology , Actinin/analysis , Aged , Alkyl and Aryl Transferases/analysis , Area Under Curve , Biopsy, Fine-Needle , Cullin Proteins/analysis , DNA-Binding Proteins/analysis , Follow-Up Studies , HSP70 Heat-Shock Proteins/analysis , Humans , Image Processing, Computer-Assisted , Male , Membrane Proteins/analysis , Middle Aged , Mitochondrial Proteins/analysis , Neoplasm Grading , Neoplasm Staging , Phosphorylation , Prostate/chemistry , Prostatic Neoplasms/chemistry , Proteomics , RNA-Binding Protein FUS , ROC Curve , Ribosomal Protein S6/analysis , Ribosomal Protein S6/metabolism , Selection Bias , Smad2 Protein/analysis , Smad4 Protein/analysis , Tissue Array Analysis , Voltage-Dependent Anion Channel 1/analysis , Y-Box-Binding Protein 1/analysis
15.
Int J Clin Exp Pathol ; 7(5): 2312-8, 2014.
Article in English | MEDLINE | ID: mdl-24966941

ABSTRACT

Hirschsprung disease (HSCR) is characterized by the absence of intramural ganglion cells in the nerve plexuses of the distal gut. Recent studies have shown that the bone morphogenetic protein receptor-type IA (BMPR1α), actinin-alpha 4 (ACTN4α) and fatty acid binding protein 7 (FABP7) play important roles in the differentiation and development of neurons. The aganglionic (stenotic) and the ganglionic (normal) colon segment tissues of 60 HSCR patients were collected to investigate the expression pattern of BMPR1α, ACTININ-4α and FABP7 using RT-PCR, quantitative real-time RT-PCR (qRT-PCR) and immunohistochemical staining. The mRNA and protein expressions of BMPR1α and ACTN4α were higher in the stenotic colon segment tissue than those in the normal colon segment tissue. However, the mRNA and protein expressions of FABP7 were lower in the stenotic colon segment tissue than those in the normal colon segment tissue. The study in HSCR patients, findings in mRNA and protein alterations to expecting provide more information to in order to find some clue for the pathomechanism of HSCR disease.


Subject(s)
Actinin/analysis , Bone Morphogenetic Protein Receptors, Type I/analysis , Carrier Proteins/analysis , Colon/chemistry , Hirschsprung Disease/metabolism , Tumor Suppressor Proteins/analysis , Actinin/genetics , Biopsy , Bone Morphogenetic Protein Receptors, Type I/genetics , Carrier Proteins/genetics , Child, Preschool , Colon/pathology , Constriction, Pathologic , Fatty Acid-Binding Protein 7 , Female , Gene Expression Regulation , Hirschsprung Disease/genetics , Hirschsprung Disease/pathology , Humans , Immunohistochemistry , Infant , Male , RNA, Messenger/analysis , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Tumor Suppressor Proteins/genetics
16.
PLoS One ; 9(4): e96395, 2014.
Article in English | MEDLINE | ID: mdl-24780915

ABSTRACT

UNLABELLED: The main hypothesis suggested that changes in the external mechanical load would lead to different deformations of the submembranous cytoskeleton and, as a result, dissociation of different proteins from its structure (induced by increased/decreased mechanical stress). The study subjects were fibers of the soleus muscle and cardiomyocytes of Wistar rats. Changes in external mechanical conditions were reconstructed by means of antiorthostatic suspension of the animals by their tails for 6, 12, 18, 24 and 72 hours. Transversal stiffness was measured by atomic force microscopy imaging; beta-, gamma-actin, alpha-actinin 1 and alpha-actinin 4 levels in membranous and cytoplasmic fractions were quantified by Western blot analysis; expression rates of the corresponding genes were studied using RT-PCR. RESULTS: In 6 hours, alpha-actinin 1 and alpha-actinin 4 levels decreased in the membranous fraction of proteins of cardiomyocytes and soleus muscle fibers, respectively, but increased in the cytoplasmic fraction of the abovementioned cells. After 6-12 hours of suspension, the expression rates of beta-, gamma-actin, alpha-actinin 1 and alpha-actinin 4 were elevated in the soleus muscle fibers, but the alpha-actinin 1 expression rate returned to the reference level in 72 hours. After 18-24 hours, the expression rates of beta-actin and alpha-actinin 4 increased in cardiomyocytes, while the alpha-actinin 1 expression rate decreased in soleus muscle fibers. After 12 hours, the beta- and gamma-actin content dropped in the membranous fraction and increased in the cytoplasmic protein fractions from both cardiomyocytes and soleus muscle fibers. The stiffness of both cell types decreased after the same period of time. Further, during the unloading period the concentration of nonmuscle actin and different isoforms of alpha-actinins increased in the membranous fraction from cardiomyocytes. At the same time, the concentration of the abovementioned proteins decreased in the soleus muscle fibers.


Subject(s)
Actinin/genetics , Muscle Fibers, Skeletal/metabolism , Muscle, Skeletal/cytology , Myocytes, Cardiac/metabolism , Actinin/analysis , Animals , Biomechanical Phenomena , Cells, Cultured , Gene Expression Regulation , Gravity, Altered , Hindlimb Suspension , Male , Mechanotransduction, Cellular , Rats , Rats, Wistar
17.
J Vasc Res ; 50(3): 210-20, 2013.
Article in English | MEDLINE | ID: mdl-23711888

ABSTRACT

BACKGROUND: This study was attempted to identify new molecules expressed on the plasma membrane of human umbilical vein endothelial cells (HUVECs) using monoclonal antibody-based proteomics technology and to determine the effect of the identified antibody on vascular reactivity. METHODS: Twenty-two antibodies were developed from rats inoculated with HUVECs, and their effects were determined by observing vascular reactivity. RESULTS: Among the 22 antibodies, the C-7 antibody significantly inhibited endothelium-dependent vasorelaxation in response to acetylcholine (ACh) but not to histamine. Moreover, the C-7 antibody did not affect norepinephrine-induced contraction in either the endothelium-intact or -denuded aorta. A proteomics study involving immunoprecipitation of the C-7 antibody with biotinylated HUVECs showed that this antibody binds to plasma membrane proteins corresponding to immunoglobulin heavy chain (VHDJ region), chaperonin-containing T-complex polypeptide 1 and α-actinin 4. The muscarinic M3 ACh receptor and α-actinin 4 were colocalized on the plasma membrane of HUVECs, and the colocalization was found to increase in response to ACh and was inhibited by pretreatment with the C-7 antibody. CONCLUSIONS: These results demonstrate that monoclonal C-7 antibody exerts an inhibitory effect on endothelium-dependent vasorelaxation induced by ACh and that this response may at least partially result from the inhibition of α-actinin 4.


Subject(s)
Actinin/immunology , Antibodies, Monoclonal/pharmacology , Endothelium, Vascular/physiology , Human Umbilical Vein Endothelial Cells/immunology , Vasodilation/physiology , Acetylcholine/pharmacology , Actinin/analysis , Amino Acid Sequence , Animals , Antibodies, Monoclonal/immunology , Cell Membrane/chemistry , Cell Membrane/metabolism , Chaperonin Containing TCP-1/analysis , Chaperonin Containing TCP-1/immunology , Humans , Hybridomas/immunology , Male , Membrane Proteins/analysis , Molecular Sequence Data , Norepinephrine/pharmacology , Proteomics/methods , Rats , Rats, Sprague-Dawley , Receptor, Muscarinic M3/analysis , Vasodilation/drug effects
18.
J Comp Pathol ; 149(2-3): 280-90, 2013.
Article in English | MEDLINE | ID: mdl-23582971

ABSTRACT

Osborne-Mendel (OM) rats spontaneously develop glomerulopathy with progressive podocyte injury. Changes in protein expression levels in the foot processes of podocytes have been suggested to play an important role in the development of renal disease. The aim of this study was to investigate the temporal relationship between the expression of five podocyte proteins (nephrin, podocin, synaptopodin, α-actinin-4 and α3-integrin) and the development of podocyte injuries, proteinuria and glomerulosclerosis in OM rats. Male OM rats 5-20 weeks of age and age-matched Fischer 344 rats were used. Semiquantitative analysis of expression of the five podocyte proteins was performed by immunofluorescence labelling. Nephrin mRNA expression was determined by quantitative real-time reverse transcriptase polymerase chain reaction and nephrin protein expression was determined by mass spectrometry. Progressive reduction in expression of the podocyte proteins correlated with the progression of podocyte injuries, the development of proteinuria and the subsequent development of glomerulosclerosis. Nephrin mRNA expression and nephrin concentration also showed temporal decreases in OM rats. Altered expression of podocyte proteins preceded the development of proteinuria and glomerulosclerosis, suggesting that this event contributes to podocyte dysfunction and progression to glomerulosclerosis.


Subject(s)
Actinin/biosynthesis , Glomerulosclerosis, Focal Segmental/metabolism , Intracellular Signaling Peptides and Proteins/biosynthesis , Membrane Proteins/biosynthesis , Microfilament Proteins/biosynthesis , Podocytes/metabolism , Actinin/analysis , Animals , Blotting, Western , Fluorescent Antibody Technique , Glomerulosclerosis, Focal Segmental/pathology , Intracellular Signaling Peptides and Proteins/analysis , Male , Membrane Proteins/analysis , Microdissection , Microfilament Proteins/analysis , Podocytes/pathology , Proteinuria/metabolism , Proteinuria/pathology , Rats , Real-Time Polymerase Chain Reaction
20.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 67(Pt 10): 1214-7, 2011 Oct 01.
Article in English | MEDLINE | ID: mdl-22102030

ABSTRACT

α-Actinins form antiparallel homodimers that are able to cross-link actin filaments. The protein contains three domains: an N-terminal actin-binding domain followed by a central rod domain and a calmodulin-like EF-hand domain at the C-terminus. Here, crystallization of the rod domain of Entamoeba histolytica α-actinin-2 is reported; it crystallized in space group P2(1)2(1)2(1), with unit-cell parameters a = 47.8, b = 79.1, c = 141.8 Å. A Matthews coefficient V(M) of 2.6 Å(3) Da(-1) suggests that there are two molecules and 52.5% solvent content in the asymmetric unit. A complete native data set extending to a d-spacing of 2.8 Å was collected on beamline I911-2 at MAX-lab, Sweden.


Subject(s)
Actinin/chemistry , Entamoeba histolytica/chemistry , Actinin/analysis , Crystallization , Crystallography, X-Ray
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